Wall clock time and date at job start Mon Mar 30 2020 00:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.46899 * 2 1 4 4 C 1.36933 * 120.00158 * 263.78333 * 3 2 1 5 5 H 1.08007 * 120.00144 * 142.61719 * 4 3 2 6 6 C 1.38811 * 120.00507 * 322.62570 * 4 3 2 7 7 N 1.31613 * 120.00251 * 157.38500 * 6 4 3 8 8 Si 1.86803 * 119.99559 * 337.37927 * 6 4 3 9 9 H 1.48503 * 109.46682 * 95.71719 * 8 6 4 10 10 H 1.48497 * 109.47421 * 215.71518 * 8 6 4 11 11 H 1.48503 * 109.47057 * 335.72056 * 8 6 4 12 12 C 1.46503 * 119.99760 * 83.79094 * 3 2 1 13 13 C 1.53004 * 109.47199 * 89.99878 * 12 3 2 14 14 N 1.46498 * 109.47038 * 179.97438 * 13 12 3 15 15 C 1.34777 * 119.99630 * 179.97438 * 14 13 12 16 16 O 1.21274 * 120.00673 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99828 * 179.97438 * 15 14 13 18 18 C 1.52993 * 109.47296 * 179.97438 * 17 15 14 19 19 H 1.08998 * 110.56905 * 307.68518 * 18 17 15 20 20 C 1.54513 * 110.51342 * 184.99989 * 18 17 15 21 21 C 1.54479 * 104.18664 * 241.28827 * 20 18 17 22 22 O 1.44644 * 104.69583 * 336.18811 * 21 20 18 23 23 C 1.44424 * 105.36950 * 40.34893 * 22 21 20 24 24 H 1.08997 * 109.46854 * 299.99429 * 1 2 3 25 25 H 1.08997 * 109.47320 * 59.99917 * 1 2 3 26 26 H 1.09000 * 109.46719 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47174 * 240.00480 * 2 1 3 28 28 H 1.08997 * 109.47320 * 120.00083 * 2 1 3 29 29 H 0.97010 * 119.99999 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47084 * 329.99589 * 12 3 2 31 31 H 1.09002 * 109.47176 * 209.99323 * 12 3 2 32 32 H 1.09006 * 109.47157 * 59.99573 * 13 12 3 33 33 H 1.09000 * 109.47279 * 300.00100 * 13 12 3 34 34 H 0.96993 * 119.99914 * 0.02562 * 14 13 12 35 35 H 1.09006 * 109.47051 * 60.00246 * 17 15 14 36 36 H 1.09000 * 109.47413 * 300.00757 * 17 15 14 37 37 H 1.08997 * 110.50911 * 0.02562 * 20 18 17 38 38 H 1.09007 * 110.50860 * 122.57464 * 20 18 17 39 39 H 1.08995 * 110.36951 * 94.92382 * 21 20 18 40 40 H 1.09004 * 110.36880 * 217.25921 * 21 20 18 41 41 H 1.08998 * 110.37405 * 200.73678 * 23 22 21 42 42 H 1.08999 * 110.46949 * 78.44072 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3676 1.9840 -1.1789 5 1 2.1496 3.0301 -1.3359 6 6 3.0016 1.2505 -2.1723 7 7 2.9449 1.6520 -3.4245 8 14 3.9354 -0.3063 -1.7319 9 1 3.0563 -1.4854 -1.9370 10 1 5.1347 -0.4263 -2.5993 11 1 4.3573 -0.2447 -0.3094 12 6 2.1330 2.1175 1.2613 13 6 3.5251 1.8959 1.8565 14 7 3.6400 2.6327 3.1175 15 6 4.7866 2.5842 3.8241 16 8 5.7234 1.9312 3.4159 17 6 4.9051 3.3426 5.1210 18 6 6.2965 3.1199 5.7168 19 1 6.5182 2.0548 5.7843 20 6 6.4026 3.7842 7.1078 21 6 7.5274 4.8301 6.9431 22 8 8.3214 4.3439 5.8362 23 6 7.3690 3.8435 4.8726 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.3883 1.1396 -4.1187 30 1 1.3776 1.7598 1.9609 31 1 1.9823 3.1811 1.0762 32 1 4.2805 2.2536 1.1569 33 1 3.6760 0.8324 2.0416 34 1 2.8906 3.1547 3.4442 35 1 4.1492 2.9860 5.8208 36 1 4.7550 4.4061 4.9351 37 1 5.4635 4.2709 7.3712 38 1 6.6742 3.0469 7.8634 39 1 7.1055 5.8069 6.7065 40 1 8.1297 4.8855 7.8499 41 1 7.8514 3.1431 4.1908 42 1 6.9217 4.6669 4.3158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753079104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:41 Heat of formation + Delta-G solvation = -95.447498 kcal Electronic energy + Delta-G solvation = -21017.188349 eV Core-core repulsion = 17803.608366 eV Total energy + Delta-G solvation = -3213.579983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11295 -39.85860 -38.32311 -35.80465 -34.51479 -33.87776 -31.92330 -30.76541 -29.63662 -27.74673 -25.59309 -24.40895 -23.76340 -22.01844 -21.83215 -20.91837 -18.77337 -18.25986 -17.35433 -17.24513 -17.03097 -16.75170 -16.38713 -16.04172 -15.68488 -15.35210 -15.01388 -14.79658 -14.45186 -14.27520 -13.87952 -13.68959 -13.53576 -13.13298 -13.00649 -12.80500 -12.67501 -12.52853 -12.35982 -12.13881 -11.92730 -11.85370 -11.72468 -11.52120 -11.42416 -10.86560 -10.76822 -10.67422 -10.04981 -8.86034 -8.24775 -5.61840 1.23932 1.38407 1.47172 1.69525 2.20807 2.37001 3.02377 3.05500 3.39832 3.60170 3.78289 3.86746 4.05121 4.19338 4.23981 4.25918 4.30720 4.33906 4.51737 4.60717 4.63753 4.67249 4.73585 4.77709 4.87526 4.87949 4.94117 4.96386 5.08688 5.14357 5.16588 5.21420 5.26435 5.50513 5.50792 5.85851 5.91879 6.14769 6.64984 6.95508 7.35416 7.59537 8.00189 8.94990 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027847 B = 0.003784 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.263182 B = 7398.146137 C = 7871.013282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.120 3.880 3 N -0.613 5.613 4 C -0.255 4.255 5 H 0.050 0.950 6 C -0.014 4.014 7 N -0.945 5.945 8 Si 0.931 3.069 9 H -0.271 1.271 10 H -0.313 1.313 11 H -0.267 1.267 12 C 0.146 3.854 13 C 0.108 3.892 14 N -0.712 5.712 15 C 0.497 3.503 16 O -0.594 6.594 17 C -0.119 4.119 18 C -0.106 4.106 19 H 0.069 0.931 20 C -0.141 4.141 21 C 0.033 3.967 22 O -0.409 6.409 23 C 0.050 3.950 24 H 0.066 0.934 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.031 0.969 28 H 0.057 0.943 29 H 0.262 0.738 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.038 0.962 34 H 0.419 0.581 35 H 0.134 0.866 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.067 0.933 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.711 4.585 24.557 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.005 4.005 3 N -0.336 5.336 4 C -0.385 4.385 5 H 0.068 0.932 6 C -0.210 4.210 7 N -0.589 5.589 8 Si 0.760 3.240 9 H -0.198 1.198 10 H -0.242 1.242 11 H -0.191 1.191 12 C 0.020 3.980 13 C -0.019 4.019 14 N -0.365 5.365 15 C 0.285 3.715 16 O -0.475 6.475 17 C -0.158 4.158 18 C -0.125 4.125 19 H 0.088 0.912 20 C -0.178 4.178 21 C -0.043 4.043 22 O -0.329 6.329 23 C -0.026 4.026 24 H 0.085 0.915 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.256 0.744 35 H 0.152 0.848 36 H 0.141 0.859 37 H 0.129 0.871 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.085 0.915 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.187 4.098 24.083 24.430 hybrid contribution 0.474 -0.687 -0.826 1.175 sum 0.661 3.411 23.257 23.515 Atomic orbital electron populations 1.22092 0.96177 1.01295 1.01521 1.21292 0.94847 0.85271 0.99049 1.44229 1.74576 1.12270 1.02566 1.18717 1.32002 0.96084 0.91672 0.93211 1.25982 0.98805 1.01054 0.95201 1.69970 1.45920 1.42652 1.00352 0.86057 0.78370 0.81468 0.78064 1.19773 1.24167 1.19116 1.21158 0.92795 0.97178 0.86870 1.21882 1.00595 0.94935 0.84454 1.45901 1.16529 1.51227 1.22825 1.21612 0.81678 0.81133 0.87087 1.90705 1.39944 1.44743 1.72122 1.21818 0.98763 1.02438 0.92788 1.22243 0.93939 1.00847 0.95457 0.91199 1.23007 1.00825 0.98614 0.95372 1.23736 0.93053 0.97414 0.90077 1.89131 1.31625 1.80984 1.31119 1.23452 0.90345 0.96959 0.91866 0.91474 0.94694 0.91514 0.95045 0.92427 0.92839 0.89693 0.91985 0.95453 0.94352 0.74372 0.84802 0.85890 0.87091 0.89886 0.90867 0.87854 0.91474 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 10.23 71.98 0.74 -4.33 16 2 C 0.12 4.84 5.01 86.38 0.43 5.27 16 3 N -0.61 -27.32 2.08 -701.99 -1.46 -28.78 16 4 C -0.25 -14.10 9.91 84.03 0.83 -13.27 16 5 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 6 C -0.01 -0.79 5.26 84.86 0.45 -0.34 16 7 N -0.94 -59.21 13.97 21.65 0.30 -58.91 16 8 Si 0.93 47.55 25.05 68.60 1.72 49.27 16 9 H -0.27 -13.01 6.69 99.48 0.67 -12.34 16 10 H -0.31 -16.46 7.11 99.48 0.71 -15.75 16 11 H -0.27 -13.47 7.11 99.48 0.71 -12.76 16 12 C 0.15 4.97 5.80 86.38 0.50 5.47 16 13 C 0.11 3.85 6.00 86.38 0.52 4.37 16 14 N -0.71 -17.71 5.56 -463.06 -2.57 -20.28 16 15 C 0.50 13.19 7.65 87.66 0.67 13.86 16 16 O -0.59 -22.57 15.03 -3.01 -0.05 -22.62 16 17 C -0.12 -1.74 4.92 29.85 0.15 -1.59 16 18 C -0.11 -1.97 2.70 -9.78 -0.03 -1.99 16 19 H 0.07 1.62 7.90 -2.39 -0.02 1.60 16 20 C -0.14 -1.63 6.73 31.61 0.21 -1.41 16 21 C 0.03 0.48 7.65 72.48 0.55 1.04 16 22 O -0.41 -10.14 11.65 -148.98 -1.74 -11.87 16 23 C 0.05 1.24 6.39 72.49 0.46 1.70 16 24 H 0.07 1.91 8.12 -2.39 -0.02 1.89 16 25 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.03 1.44 3.60 -2.38 -0.01 1.44 16 28 H 0.06 2.06 8.12 -2.39 -0.02 2.04 16 29 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 30 H 0.08 2.26 8.05 -2.39 -0.02 2.24 16 31 H 0.06 2.07 8.04 -2.39 -0.02 2.05 16 32 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.42 6.60 8.47 -92.71 -0.79 5.82 16 35 H 0.13 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.12 1.20 7.96 -2.39 -0.02 1.18 16 37 H 0.11 0.61 7.73 -2.39 -0.02 0.59 16 38 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 2.05 7.80 -2.39 -0.02 2.03 16 42 H 0.06 1.40 7.74 -2.39 -0.02 1.38 16 Total: -1.00 -77.25 337.53 1.86 -75.40 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.16 Total: 9.02 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 5.49 Total: 8.78 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -3.73 Total: -107.97 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -1.78 Total: -34.49 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.72 Total: 49.27 kcal Total: -77.25 1.86 -75.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753079104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.051 kcal (2) G-P(sol) polarization free energy of solvation -77.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds