Wall clock time and date at job start Mon Mar 30 2020 01:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47013 * 2 1 4 4 C 1.42903 * 113.99918 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47123 * 330.00356 * 4 3 2 6 6 C 1.53002 * 109.47071 * 90.00028 * 4 3 2 7 7 C 1.50696 * 109.47220 * 210.00099 * 4 3 2 8 8 O 1.21282 * 120.00161 * 355.00040 * 7 4 3 9 9 N 1.34774 * 120.00207 * 174.99887 * 7 4 3 10 10 C 1.46494 * 120.00307 * 179.97438 * 9 7 4 11 11 C 1.53001 * 109.47131 * 185.65787 * 10 9 7 12 12 H 1.08996 * 109.99911 * 304.86230 * 11 10 9 13 13 C 1.54319 * 109.88476 * 65.96343 * 11 10 9 14 14 C 1.55159 * 102.94183 * 141.60906 * 13 11 10 15 15 C 1.55128 * 101.48800 * 324.33090 * 14 13 11 16 16 N 1.47026 * 109.88073 * 183.77314 * 11 10 9 17 17 C 1.36936 * 125.65056 * 61.60491 * 16 11 10 18 18 H 1.08002 * 120.00203 * 14.71004 * 17 16 11 19 19 C 1.38820 * 119.99821 * 194.71616 * 17 16 11 20 20 N 1.31607 * 120.00085 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99740 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47064 * 89.99503 * 21 19 17 23 23 H 1.48491 * 109.46953 * 209.99722 * 21 19 17 24 24 H 1.48500 * 109.47056 * 329.99920 * 21 19 17 25 25 H 1.09011 * 109.46764 * 299.99943 * 1 2 3 26 26 H 1.09001 * 109.47498 * 59.99917 * 1 2 3 27 27 H 1.09004 * 109.47379 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46787 * 240.00393 * 2 1 3 29 29 H 1.09005 * 109.47024 * 120.00117 * 2 1 3 30 30 H 1.08996 * 109.47214 * 59.99933 * 6 4 3 31 31 H 1.08994 * 109.47077 * 180.02562 * 6 4 3 32 32 H 1.09004 * 109.46944 * 299.99926 * 6 4 3 33 33 H 0.96998 * 119.99648 * 0.02562 * 9 7 4 34 34 H 1.08996 * 109.47354 * 65.65622 * 10 9 7 35 35 H 1.09002 * 109.47032 * 305.65116 * 10 9 7 36 36 H 1.08998 * 110.71899 * 259.97327 * 13 11 10 37 37 H 1.08994 * 110.72451 * 23.24745 * 13 11 10 38 38 H 1.09010 * 111.00169 * 82.57394 * 14 13 11 39 39 H 1.08999 * 111.00077 * 206.41945 * 14 13 11 40 40 H 1.08995 * 110.49672 * 278.45246 * 15 14 13 41 41 H 1.09005 * 110.34047 * 156.05476 * 15 14 13 42 42 H 0.97002 * 120.00561 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8636 0.6015 0.5129 6 6 3.9387 1.5006 -1.4433 7 6 3.8348 2.7263 0.7098 8 8 2.9865 3.5046 1.0913 9 7 5.1387 2.9937 0.9213 10 6 5.5314 4.2248 1.6114 11 6 7.0559 4.3537 1.5966 12 1 7.5098 3.4600 2.0247 13 6 7.5518 4.5522 0.1488 14 6 8.7038 5.5784 0.3136 15 6 8.1599 6.4721 1.4590 16 7 7.4649 5.5389 2.3644 17 6 7.2335 5.7447 3.6983 18 1 6.9294 4.9209 4.3270 19 6 7.3897 7.0122 4.2424 20 7 7.7606 8.0160 3.4764 21 14 7.0733 7.2930 6.0619 22 1 8.3319 7.0829 6.8214 23 1 6.5943 8.6827 6.2723 24 1 6.0421 6.3365 6.5384 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 3.5060 2.3592 -1.9568 31 1 5.0252 1.5862 -1.4438 32 1 3.6465 0.5848 -1.9571 33 1 5.8171 2.3714 0.6159 34 1 5.1796 4.1914 2.6425 35 1 5.0894 5.0824 1.1043 36 1 7.9262 3.6148 -0.2625 37 1 6.7588 4.9601 -0.4780 38 1 9.6296 5.0827 0.6061 39 1 8.8442 6.1580 -0.5988 40 1 7.4616 7.2116 1.0673 41 1 8.9822 6.9636 1.9791 42 1 7.8701 8.9017 3.8566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753097598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:48 Heat of formation + Delta-G solvation = -67.545973 kcal Electronic energy + Delta-G solvation = -21281.660424 eV Core-core repulsion = 18069.290342 eV Total energy + Delta-G solvation = -3212.370082 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.80665 -38.06347 -37.31072 -34.24827 -32.66321 -32.37099 -30.42386 -29.54518 -28.50258 -25.23697 -24.49554 -23.41511 -22.72051 -20.43759 -20.04720 -19.47707 -17.36061 -17.10961 -16.53452 -15.96364 -15.52011 -14.91519 -14.76596 -14.49437 -13.87385 -13.71954 -13.54053 -13.20105 -12.96269 -12.63182 -12.37003 -12.14202 -12.08060 -11.89153 -11.74431 -11.53085 -11.30233 -11.20378 -10.94446 -10.78128 -10.24461 -10.10571 -9.99821 -9.92967 -9.83667 -9.71622 -9.30177 -8.65990 -8.56608 -6.84610 -5.76936 -3.13704 2.86128 2.99175 3.40124 3.46343 3.48114 3.90146 4.48469 4.65105 4.77626 4.86462 4.92719 5.04189 5.13014 5.27053 5.33689 5.40059 5.47329 5.52981 5.54091 5.62454 5.69658 5.80646 5.90942 5.93867 6.05801 6.13054 6.23827 6.45110 6.54754 6.61894 6.70546 6.80731 6.95938 7.08016 7.51232 7.60694 7.78777 7.80207 8.25312 8.51702 9.17134 9.77693 10.44895 11.34969 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.004212 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.034423 B = 6646.528585 C = 7610.954781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.071 3.929 5 H 0.083 0.917 6 C -0.169 4.169 7 C 0.507 3.493 8 O -0.522 6.522 9 N -0.721 5.721 10 C 0.110 3.890 11 C 0.152 3.848 12 H 0.037 0.963 13 C -0.126 4.126 14 C -0.149 4.149 15 C 0.172 3.828 16 N -0.589 5.589 17 C -0.235 4.235 18 H 0.076 0.924 19 C -0.001 4.001 20 N -0.915 5.915 21 Si 0.911 3.089 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.280 1.280 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.394 0.606 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.026 0.974 41 H 0.073 0.927 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.895 -16.213 -10.449 19.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.009 3.991 5 H 0.101 0.899 6 C -0.227 4.227 7 C 0.290 3.710 8 O -0.396 6.396 9 N -0.374 5.374 10 C -0.015 4.015 11 C 0.044 3.956 12 H 0.055 0.945 13 C -0.164 4.164 14 C -0.187 4.187 15 C 0.047 3.953 16 N -0.313 5.313 17 C -0.363 4.363 18 H 0.094 0.906 19 C -0.198 4.198 20 N -0.561 5.561 21 Si 0.741 3.259 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.228 0.772 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.044 0.956 41 H 0.091 0.909 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.628 -15.249 -9.987 19.077 hybrid contribution 0.243 -0.325 0.801 0.898 sum -5.385 -15.574 -9.186 18.866 Atomic orbital electron populations 1.21728 0.93534 1.02058 1.03483 1.22576 0.95933 0.83808 0.99928 1.88076 1.18605 1.25989 1.94925 1.21918 0.83538 0.96940 0.96696 0.89923 1.22218 1.01766 1.03508 0.95168 1.20317 0.83094 0.87533 0.80025 1.90732 1.50205 1.48743 1.49968 1.46073 1.06352 1.24937 1.60076 1.22257 0.97854 0.84475 0.96908 1.21134 0.90483 0.92605 0.91427 0.94500 1.22607 0.98613 0.98820 0.96355 1.23045 0.97307 0.98384 1.00013 1.21510 0.95878 0.90177 0.87712 1.44506 1.64008 1.17399 1.05399 1.18987 1.41227 0.93593 0.82519 0.90638 1.24919 1.01215 0.95351 0.98329 1.69928 1.51983 1.00211 1.33992 0.86142 0.77947 0.77333 0.84498 1.21529 1.21561 1.20505 0.91605 0.91777 0.91147 0.93350 0.93313 0.91044 0.90822 0.91527 0.77244 0.91501 0.91564 0.92433 0.91804 0.92286 0.92369 0.95573 0.90907 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.91 16 2 C 0.05 0.52 6.47 37.16 0.24 0.76 16 3 O -0.36 -4.94 9.53 -55.09 -0.52 -5.47 16 4 C 0.07 0.85 3.13 -27.88 -0.09 0.76 16 5 H 0.08 0.77 7.79 -51.93 -0.40 0.36 16 6 C -0.17 -1.56 9.48 37.16 0.35 -1.21 16 7 C 0.51 8.33 7.18 -10.99 -0.08 8.25 16 8 O -0.52 -11.38 16.50 -14.30 -0.24 -11.61 16 9 N -0.72 -10.82 5.31 -60.30 -0.32 -11.14 16 10 C 0.11 2.14 5.09 -4.04 -0.02 2.12 16 11 C 0.15 2.97 3.20 -66.95 -0.21 2.75 16 12 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 13 C -0.13 -2.06 6.17 -24.90 -0.15 -2.21 16 14 C -0.15 -2.69 7.10 -24.46 -0.17 -2.87 16 15 C 0.17 4.09 5.42 -2.41 -0.01 4.08 16 16 N -0.59 -14.59 3.13 -162.43 -0.51 -15.10 16 17 C -0.23 -6.45 9.73 -15.06 -0.15 -6.59 16 18 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 19 C 0.00 -0.02 5.47 -17.43 -0.10 -0.12 16 20 N -0.92 -26.71 10.57 55.49 0.59 -26.12 16 21 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.36 7.87 -51.93 -0.41 -0.04 16 29 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.56 7.92 -51.93 -0.41 0.14 16 32 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 33 H 0.39 4.48 8.17 -40.82 -0.33 4.14 16 34 H 0.07 1.49 7.88 -51.93 -0.41 1.08 16 35 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.05 7.79 -51.93 -0.40 0.64 16 38 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 41 H 0.07 1.93 6.92 -51.93 -0.36 1.57 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 342.29 15.07 5.16 5.16 Total: -1.00 -33.51 342.29 -8.20 -41.71 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -7.32 Total: 0.59 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -0.01 Total: 4.81 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.24 Total: -52.37 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.76 Total: -17.08 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.51 -8.20 -41.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753097598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.834 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds