Wall clock time and date at job start Mon Mar 30 2020 01:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47013 * 2 1 4 4 C 1.42903 * 113.99918 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47123 * 330.00356 * 4 3 2 6 6 C 1.53002 * 109.47071 * 90.00028 * 4 3 2 7 7 C 1.50696 * 109.47220 * 210.00099 * 4 3 2 8 8 O 1.21282 * 120.00161 * 355.00040 * 7 4 3 9 9 N 1.34774 * 120.00207 * 174.99887 * 7 4 3 10 10 C 1.46494 * 120.00307 * 179.97438 * 9 7 4 11 11 C 1.53001 * 109.47131 * 185.65787 * 10 9 7 12 12 H 1.08996 * 109.99911 * 304.86230 * 11 10 9 13 13 C 1.54319 * 109.88476 * 65.96343 * 11 10 9 14 14 C 1.55159 * 102.94183 * 141.60906 * 13 11 10 15 15 C 1.55128 * 101.48800 * 324.33090 * 14 13 11 16 16 N 1.47026 * 109.88073 * 183.77314 * 11 10 9 17 17 C 1.36936 * 125.65056 * 61.60491 * 16 11 10 18 18 H 1.08002 * 120.00203 * 14.71004 * 17 16 11 19 19 C 1.38820 * 119.99821 * 194.71616 * 17 16 11 20 20 N 1.31607 * 120.00085 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99740 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47064 * 89.99503 * 21 19 17 23 23 H 1.48491 * 109.46953 * 209.99722 * 21 19 17 24 24 H 1.48500 * 109.47056 * 329.99920 * 21 19 17 25 25 H 1.09011 * 109.46764 * 299.99943 * 1 2 3 26 26 H 1.09001 * 109.47498 * 59.99917 * 1 2 3 27 27 H 1.09004 * 109.47379 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46787 * 240.00393 * 2 1 3 29 29 H 1.09005 * 109.47024 * 120.00117 * 2 1 3 30 30 H 1.08996 * 109.47214 * 59.99933 * 6 4 3 31 31 H 1.08994 * 109.47077 * 180.02562 * 6 4 3 32 32 H 1.09004 * 109.46944 * 299.99926 * 6 4 3 33 33 H 0.96998 * 119.99648 * 0.02562 * 9 7 4 34 34 H 1.08996 * 109.47354 * 65.65622 * 10 9 7 35 35 H 1.09002 * 109.47032 * 305.65116 * 10 9 7 36 36 H 1.08998 * 110.71899 * 259.97327 * 13 11 10 37 37 H 1.08994 * 110.72451 * 23.24745 * 13 11 10 38 38 H 1.09010 * 111.00169 * 82.57394 * 14 13 11 39 39 H 1.08999 * 111.00077 * 206.41945 * 14 13 11 40 40 H 1.08995 * 110.49672 * 278.45246 * 15 14 13 41 41 H 1.09005 * 110.34047 * 156.05476 * 15 14 13 42 42 H 0.97002 * 120.00561 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8636 0.6015 0.5129 6 6 3.9387 1.5006 -1.4433 7 6 3.8348 2.7263 0.7098 8 8 2.9865 3.5046 1.0913 9 7 5.1387 2.9937 0.9213 10 6 5.5314 4.2248 1.6114 11 6 7.0559 4.3537 1.5966 12 1 7.5098 3.4600 2.0247 13 6 7.5518 4.5522 0.1488 14 6 8.7038 5.5784 0.3136 15 6 8.1599 6.4721 1.4590 16 7 7.4649 5.5389 2.3644 17 6 7.2335 5.7447 3.6983 18 1 6.9294 4.9209 4.3270 19 6 7.3897 7.0122 4.2424 20 7 7.7606 8.0160 3.4764 21 14 7.0733 7.2930 6.0619 22 1 8.3319 7.0829 6.8214 23 1 6.5943 8.6827 6.2723 24 1 6.0421 6.3365 6.5384 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 3.5060 2.3592 -1.9568 31 1 5.0252 1.5862 -1.4438 32 1 3.6465 0.5848 -1.9571 33 1 5.8171 2.3714 0.6159 34 1 5.1796 4.1914 2.6425 35 1 5.0894 5.0824 1.1043 36 1 7.9262 3.6148 -0.2625 37 1 6.7588 4.9601 -0.4780 38 1 9.6296 5.0827 0.6061 39 1 8.8442 6.1580 -0.5988 40 1 7.4616 7.2116 1.0673 41 1 8.9822 6.9636 1.9791 42 1 7.8701 8.9017 3.8566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753097598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:47 Heat of formation + Delta-G solvation = -90.973021 kcal Electronic energy + Delta-G solvation = -21282.676297 eV Core-core repulsion = 18069.290342 eV Total energy + Delta-G solvation = -3213.385955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07637 -39.45639 -38.59505 -35.79473 -34.44234 -33.37877 -31.52035 -31.12834 -30.01876 -26.81597 -26.09918 -24.66623 -23.53269 -22.05083 -21.46195 -21.07562 -18.92705 -18.15570 -18.05888 -17.22537 -16.76575 -16.40132 -16.13453 -16.04057 -15.64912 -15.05444 -14.71549 -14.21348 -14.10933 -13.92762 -13.66084 -13.45383 -13.29818 -13.18094 -12.98452 -12.87950 -12.85541 -12.65485 -12.27693 -12.04971 -12.02054 -11.85765 -11.72422 -11.47731 -11.39667 -10.97812 -10.68865 -10.46142 -10.09697 -8.86915 -7.89634 -5.27202 1.42892 1.45598 1.53618 1.58323 1.87058 2.47581 2.95356 3.30200 3.61426 3.81059 3.93617 3.97500 3.98977 4.06036 4.21574 4.27374 4.34512 4.45545 4.50043 4.54811 4.64866 4.73079 4.82461 4.90631 4.97059 5.00924 5.02792 5.14927 5.21669 5.24225 5.27318 5.35934 5.46726 5.57376 5.66569 5.78028 6.15816 6.22368 6.61670 7.08130 7.27539 7.75541 8.41142 9.21192 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.004212 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.034423 B = 6646.528585 C = 7610.954781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.397 6.397 4 C 0.077 3.923 5 H 0.119 0.881 6 C -0.163 4.163 7 C 0.500 3.500 8 O -0.586 6.586 9 N -0.700 5.700 10 C 0.129 3.871 11 C 0.148 3.852 12 H 0.057 0.943 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.172 3.828 16 N -0.612 5.612 17 C -0.241 4.241 18 H 0.077 0.923 19 C -0.060 4.060 20 N -0.946 5.946 21 Si 0.972 3.028 22 H -0.280 1.280 23 H -0.296 1.296 24 H -0.274 1.274 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.418 0.582 34 H 0.030 0.970 35 H 0.032 0.968 36 H 0.110 0.890 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.081 0.919 40 H -0.011 1.011 41 H 0.036 0.964 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.098 -19.745 -12.014 23.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.316 6.316 4 C 0.016 3.984 5 H 0.137 0.863 6 C -0.221 4.221 7 C 0.287 3.713 8 O -0.465 6.465 9 N -0.355 5.355 10 C 0.003 3.997 11 C 0.041 3.959 12 H 0.074 0.926 13 C -0.150 4.150 14 C -0.171 4.171 15 C 0.047 3.953 16 N -0.336 5.336 17 C -0.370 4.370 18 H 0.095 0.905 19 C -0.254 4.254 20 N -0.594 5.594 21 Si 0.800 3.200 22 H -0.207 1.207 23 H -0.222 1.222 24 H -0.199 1.199 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.116 0.884 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.256 0.744 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.128 0.872 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.007 0.993 41 H 0.055 0.945 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.803 -18.861 -11.586 22.650 hybrid contribution -0.055 0.707 1.275 1.459 sum -4.858 -18.154 -10.311 21.436 Atomic orbital electron populations 1.21782 0.93407 1.03469 1.02257 1.22848 0.96188 0.82205 1.01681 1.88044 1.19624 1.28777 1.95201 1.22010 0.83377 0.94888 0.98128 0.86318 1.22233 1.02994 1.03987 0.92848 1.21360 0.82457 0.88530 0.78966 1.90705 1.51948 1.51245 1.52647 1.45737 1.06975 1.23695 1.59062 1.21693 0.97749 0.85432 0.94856 1.21368 0.90051 0.91183 0.93278 0.92569 1.22609 0.97730 1.00716 0.93929 1.22906 0.98135 0.97817 0.98277 1.21329 0.93948 0.90731 0.89271 1.44783 1.64700 1.18936 1.05197 1.19312 1.39776 0.93633 0.84288 0.90522 1.25693 1.02028 0.95417 1.02260 1.70135 1.53638 1.00199 1.35384 0.85183 0.77995 0.76681 0.80136 1.20654 1.22222 1.19895 0.93521 0.92341 0.88385 0.90632 0.92299 0.93172 0.88480 0.88806 0.74407 0.95146 0.94916 0.87194 0.91869 0.90877 0.90002 0.99269 0.94529 0.94316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 10.28 71.98 0.74 -1.63 16 2 C 0.05 0.76 6.47 71.98 0.47 1.23 16 3 O -0.40 -10.39 9.53 -129.99 -1.24 -11.63 16 4 C 0.08 1.63 3.13 29.85 0.09 1.73 16 5 H 0.12 1.66 7.79 -2.39 -0.02 1.64 16 6 C -0.16 -2.39 9.48 71.98 0.68 -1.71 16 7 C 0.50 16.03 7.18 87.66 0.63 16.66 16 8 O -0.59 -26.43 16.50 15.95 0.26 -26.17 16 9 N -0.70 -19.76 5.31 -463.08 -2.46 -22.22 16 10 C 0.13 5.08 5.09 86.38 0.44 5.52 16 11 C 0.15 5.59 3.20 45.34 0.15 5.73 16 12 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 13 C -0.11 -3.27 6.17 31.78 0.20 -3.07 16 14 C -0.13 -4.49 7.10 32.06 0.23 -4.27 16 15 C 0.17 8.39 5.42 86.93 0.47 8.86 16 16 N -0.61 -30.78 3.13 -667.81 -2.09 -32.87 16 17 C -0.24 -13.54 9.73 84.04 0.82 -12.72 16 18 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 19 C -0.06 -3.48 5.47 84.87 0.46 -3.02 16 20 N -0.95 -57.69 10.57 21.65 0.23 -57.46 16 21 Si 0.97 46.92 29.55 68.60 2.03 48.95 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 24 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 25 H 0.05 0.88 8.14 -2.38 -0.02 0.87 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 0.82 7.87 -2.39 -0.02 0.81 16 29 H 0.06 0.83 8.09 -2.38 -0.02 0.81 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 0.95 7.92 -2.39 -0.02 0.94 16 32 H 0.09 0.91 7.87 -2.39 -0.02 0.89 16 33 H 0.42 7.77 8.17 -92.71 -0.76 7.01 16 34 H 0.03 1.40 7.88 -2.39 -0.02 1.38 16 35 H 0.03 1.50 8.04 -2.39 -0.02 1.48 16 36 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.06 1.89 7.79 -2.39 -0.02 1.87 16 38 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 39 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 40 H -0.01 -0.59 8.06 -2.39 -0.02 -0.61 16 41 H 0.04 2.01 6.92 -2.38 -0.02 1.99 16 42 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -79.84 342.29 2.34 -77.51 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.23 Total: 10.57 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 5.37 Total: 13.31 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -4.32 Total: -112.55 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -0.98 Total: -37.79 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -79.84 2.34 -77.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753097598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.468 kcal (2) G-P(sol) polarization free energy of solvation -79.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds