Wall clock time and date at job start Mon Mar 30 2020 01:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00201 * 2 1 4 4 C 1.53000 * 109.47277 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47480 * 175.64733 * 4 3 2 6 6 C 1.50695 * 115.54797 * 303.81499 * 5 4 3 7 7 O 1.21288 * 119.99843 * 113.35118 * 6 5 4 8 8 N 1.34777 * 120.00227 * 293.62210 * 6 5 4 9 9 C 1.46496 * 119.99625 * 4.52116 * 8 6 5 10 10 C 1.46496 * 119.99894 * 184.52417 * 8 6 5 11 11 C 1.52995 * 109.47559 * 89.99983 * 10 8 6 12 12 N 1.46495 * 109.47544 * 179.97438 * 11 10 8 13 13 C 1.36936 * 119.99991 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00556 * 0.02562 * 13 12 11 15 15 C 1.38816 * 119.99957 * 180.02562 * 13 12 11 16 16 N 1.31621 * 120.00120 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00126 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47388 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47336 * 119.99852 * 17 15 13 20 20 H 1.48497 * 109.47148 * 239.99764 * 17 15 13 21 21 C 1.52998 * 117.49676 * 89.48352 * 5 4 3 22 22 C 1.53005 * 117.49853 * 158.14326 * 5 4 3 23 23 H 1.09007 * 109.46878 * 299.99714 * 1 2 3 24 24 H 1.09003 * 109.47168 * 59.99576 * 1 2 3 25 25 H 1.08999 * 109.47452 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46995 * 60.00198 * 3 2 1 27 27 H 1.08996 * 109.47371 * 300.00140 * 3 2 1 28 28 H 1.09005 * 109.47060 * 55.64803 * 4 3 2 29 29 H 1.09004 * 109.47306 * 295.65240 * 4 3 2 30 30 H 1.09003 * 109.46950 * 93.54073 * 9 8 6 31 31 H 1.08998 * 109.46932 * 213.53766 * 9 8 6 32 32 H 1.08999 * 109.47227 * 333.53598 * 9 8 6 33 33 H 1.09007 * 109.46701 * 209.99993 * 10 8 6 34 34 H 1.08995 * 109.47280 * 329.99392 * 10 8 6 35 35 H 1.08998 * 109.47241 * 300.00055 * 11 10 8 36 36 H 1.09003 * 109.47123 * 59.99680 * 11 10 8 37 37 H 0.96999 * 119.99663 * 0.02562 * 12 11 10 38 38 H 0.96993 * 120.00260 * 180.02562 * 16 15 13 39 39 H 1.09002 * 117.49975 * 215.00568 * 21 5 4 40 40 H 1.09008 * 117.50286 * 0.02562 * 21 5 4 41 41 H 1.08995 * 117.49682 * 359.97438 * 22 5 4 42 42 H 1.09000 * 117.49666 * 144.97741 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1575 2.5781 -0.1101 6 6 3.7232 3.3919 -1.3018 7 8 3.0648 4.3979 -1.1418 8 7 4.0617 2.9989 -2.5458 9 6 4.7658 1.7300 -2.7468 10 6 3.7256 3.8406 -3.6967 11 6 4.8734 4.8150 -3.9685 12 7 4.5376 5.6563 -5.1199 13 6 5.4202 6.6101 -5.5515 14 1 6.3641 6.7420 -5.0435 15 6 5.1018 7.4076 -6.6422 16 7 3.9512 7.2474 -7.2611 17 14 6.3060 8.7083 -7.2315 18 1 7.5175 8.6866 -6.3729 19 1 6.6914 8.4255 -8.6374 20 1 5.6669 10.0464 -7.1531 21 6 4.4422 3.3289 1.1922 22 6 5.5987 2.7485 0.3744 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8463 -0.8899 28 1 3.8515 0.5779 -0.8493 29 1 3.8630 0.7122 0.9255 30 1 4.0418 0.9412 -2.9510 31 1 5.4490 1.8235 -3.5909 32 1 5.3304 1.4814 -1.8482 33 1 3.5677 3.2116 -4.5729 34 1 2.8157 4.4014 -3.4834 35 1 5.0314 5.4438 -3.0924 36 1 5.7834 4.2541 -4.1819 37 1 3.6897 5.5381 -5.5759 38 1 3.7289 7.8044 -8.0234 39 1 4.3154 4.4115 1.1871 40 1 4.1867 2.8299 2.1271 41 1 6.1036 1.8679 0.7716 42 1 6.2329 3.4490 -0.1690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753195982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:02 Heat of formation + Delta-G solvation = -66.989748 kcal Electronic energy + Delta-G solvation = -21194.285998 eV Core-core repulsion = 17981.940035 eV Total energy + Delta-G solvation = -3212.345963 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.54694 -38.98277 -37.97532 -37.26227 -36.08679 -33.41128 -32.06841 -30.05642 -27.67449 -27.47842 -26.18982 -24.67381 -23.74837 -23.35734 -22.37224 -19.81956 -19.18527 -17.85786 -17.47199 -17.41896 -16.93554 -16.77239 -16.28783 -15.94764 -15.68722 -15.34218 -15.18729 -14.99327 -14.58454 -14.29452 -13.89766 -13.42992 -13.35271 -13.12186 -12.97480 -12.88302 -12.73491 -12.49868 -12.45384 -12.33836 -12.18944 -12.11506 -11.89730 -11.52717 -11.06058 -11.01684 -10.75639 -10.67882 -9.74889 -9.10657 -8.00700 -5.32142 1.44460 1.46721 1.48570 1.56905 1.87606 2.50166 2.53829 2.88863 3.32479 3.42149 3.67433 3.87359 3.92644 4.02391 4.07624 4.11537 4.18536 4.27884 4.34541 4.46958 4.47778 4.51078 4.54571 4.67670 4.73412 4.77524 4.83241 4.85323 4.94625 4.96509 5.00156 5.05904 5.10664 5.21257 5.39518 5.49353 6.11886 6.20562 6.35909 7.10157 7.26633 7.97334 8.23126 9.22911 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027534 B = 0.003670 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.682376 B = 7628.156643 C = 8104.687218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.063 3.937 4 C -0.068 4.068 5 C -0.165 4.165 6 C 0.538 3.462 7 O -0.587 6.587 8 N -0.604 5.604 9 C 0.069 3.931 10 C 0.120 3.880 11 C 0.152 3.848 12 N -0.743 5.743 13 C -0.252 4.252 14 H 0.074 0.926 15 C -0.073 4.073 16 N -0.968 5.968 17 Si 0.979 3.021 18 H -0.266 1.266 19 H -0.287 1.287 20 H -0.292 1.292 21 C -0.149 4.149 22 C -0.132 4.132 23 H 0.049 0.951 24 H 0.036 0.964 25 H 0.105 0.895 26 H 0.052 0.948 27 H 0.022 0.978 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.057 0.943 35 H -0.002 1.002 36 H 0.033 0.967 37 H 0.375 0.625 38 H 0.254 0.746 39 H 0.077 0.923 40 H 0.131 0.869 41 H 0.144 0.856 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.313 -19.090 17.921 26.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C -0.014 4.014 4 C -0.105 4.105 5 C -0.168 4.168 6 C 0.328 3.672 7 O -0.467 6.467 8 N -0.336 5.336 9 C -0.072 4.072 10 C -0.004 4.004 11 C 0.024 3.976 12 N -0.387 5.387 13 C -0.383 4.383 14 H 0.092 0.908 15 C -0.266 4.266 16 N -0.618 5.618 17 Si 0.807 3.193 18 H -0.190 1.190 19 H -0.213 1.213 20 H -0.219 1.219 21 C -0.186 4.186 22 C -0.169 4.169 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.124 0.876 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.016 0.984 36 H 0.051 0.949 37 H 0.207 0.793 38 H 0.063 0.937 39 H 0.096 0.904 40 H 0.150 0.850 41 H 0.162 0.838 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.251 -18.672 17.997 25.934 hybrid contribution -0.422 1.504 -0.975 1.842 sum -0.172 -17.167 17.022 24.176 Atomic orbital electron populations 1.22922 0.79798 1.04024 1.00369 1.87783 1.21142 1.27877 1.95510 1.22456 0.94999 0.84306 0.99604 1.21067 0.91717 0.91823 1.05865 1.21238 1.03473 0.97815 0.94286 1.20347 0.78306 0.84228 0.84357 1.90696 1.40927 1.28898 1.86195 1.47812 1.57871 1.22560 1.05349 1.22225 0.97343 0.83150 1.04496 1.21348 0.97236 0.93207 0.88626 1.20917 0.96451 0.91551 0.88684 1.42408 1.20989 1.41074 1.34217 1.19629 0.98640 1.10278 1.09776 0.90817 1.25654 0.99343 1.02539 0.99038 1.69826 1.24182 1.43635 1.24163 0.84996 0.78228 0.78212 0.77819 1.19037 1.21338 1.21932 1.23146 1.01603 0.99855 0.94016 1.23250 0.88192 1.04389 1.01102 0.93271 0.94507 0.87616 0.92942 0.95920 0.88810 0.87360 0.90819 0.90344 0.88129 0.88680 0.92459 0.98437 0.94937 0.79278 0.93736 0.90393 0.85049 0.83827 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -8.25 10.70 -148.98 -1.59 -9.85 16 3 C 0.06 1.31 5.79 71.98 0.42 1.73 16 4 C -0.07 -1.08 5.16 30.59 0.16 -0.92 16 5 C -0.16 -3.37 0.89 -52.93 -0.05 -3.42 16 6 C 0.54 16.78 5.86 87.66 0.51 17.30 16 7 O -0.59 -24.52 16.28 -3.05 -0.05 -24.56 16 8 N -0.60 -17.51 2.87 -846.78 -2.43 -19.95 16 9 C 0.07 1.29 9.11 127.77 1.16 2.46 16 10 C 0.12 4.35 5.57 86.38 0.48 4.83 16 11 C 0.15 6.66 6.58 86.38 0.57 7.23 16 12 N -0.74 -40.36 5.60 -343.47 -1.92 -42.29 16 13 C -0.25 -14.76 9.99 84.03 0.84 -13.92 16 14 H 0.07 4.18 7.83 -2.91 -0.02 4.15 16 15 C -0.07 -4.34 5.50 84.86 0.47 -3.88 16 16 N -0.97 -60.71 13.06 21.65 0.28 -60.42 16 17 Si 0.98 47.18 29.55 68.60 2.03 49.21 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 20 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 21 C -0.15 -2.75 9.75 30.62 0.30 -2.45 16 22 C -0.13 -2.01 9.17 30.62 0.28 -1.73 16 23 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 24 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.02 0.59 7.30 -2.39 -0.02 0.57 16 28 H 0.09 1.33 5.83 -2.38 -0.01 1.31 16 29 H 0.11 1.21 8.10 -2.39 -0.02 1.19 16 30 H 0.07 1.16 7.79 -2.39 -0.02 1.14 16 31 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 32 H 0.10 1.39 5.37 -2.39 -0.01 1.38 16 33 H 0.09 3.11 8.07 -2.38 -0.02 3.09 16 34 H 0.06 2.40 7.36 -2.39 -0.02 2.39 16 35 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.38 21.35 7.67 -92.71 -0.71 20.64 16 38 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.08 1.89 8.02 -2.39 -0.02 1.87 16 40 H 0.13 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -76.81 346.80 2.98 -73.83 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.28 Total: 25.17 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 6.39 Total: 8.87 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -4.07 Total: -122.66 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -1.64 Total: -34.41 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -76.81 2.98 -73.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753195982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.839 kcal (2) G-P(sol) polarization free energy of solvation -76.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds