Wall clock time and date at job start Mon Mar 30 2020 01:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.47148 * 2 1 4 4 C 1.42905 * 114.00174 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47277 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.46959 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00282 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99763 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99952 * 179.97438 * 8 6 5 10 10 C 1.53773 * 113.61686 * 254.13880 * 9 8 6 11 11 C 1.54049 * 86.98868 * 270.83833 * 10 9 8 12 12 C 1.53002 * 113.62545 * 220.02302 * 11 10 9 13 13 N 1.46502 * 109.46813 * 272.49316 * 12 11 10 14 14 C 1.36936 * 119.99868 * 179.97438 * 13 12 11 15 15 H 1.08009 * 119.99818 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00011 * 179.97438 * 14 13 12 17 17 N 1.31612 * 120.00163 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99930 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47221 * 60.00266 * 18 16 14 20 20 H 1.48499 * 109.47139 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47213 * 300.00191 * 18 16 14 22 22 C 1.53781 * 113.61361 * 156.53041 * 9 8 6 23 23 H 1.08997 * 109.46999 * 60.00428 * 1 2 3 24 24 H 1.09003 * 109.46905 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47253 * 300.00192 * 1 2 3 26 26 H 1.08991 * 109.47374 * 239.99353 * 2 1 3 27 27 H 1.09007 * 109.46844 * 119.99521 * 2 1 3 28 28 H 1.08998 * 109.47010 * 59.99440 * 4 3 2 29 29 H 1.08999 * 109.46708 * 299.99859 * 4 3 2 30 30 H 1.09001 * 109.47078 * 59.99465 * 5 4 3 31 31 H 1.09002 * 109.46665 * 299.99943 * 5 4 3 32 32 H 0.96997 * 120.00341 * 359.97438 * 8 6 5 33 33 H 1.09002 * 112.84852 * 25.33640 * 9 8 6 34 34 H 1.09007 * 113.61678 * 25.42910 * 10 9 8 35 35 H 1.09000 * 113.61916 * 156.33583 * 10 9 8 36 36 H 1.09005 * 113.68989 * 89.12112 * 11 10 9 37 37 H 1.09005 * 109.46483 * 32.48989 * 12 11 10 38 38 H 1.08995 * 109.47301 * 152.49438 * 12 11 10 39 39 H 0.97002 * 119.99977 * 0.02562 * 13 12 11 40 40 H 0.97000 * 120.00406 * 180.02562 * 17 16 14 41 41 H 1.09001 * 113.61158 * 203.66864 * 22 9 8 42 42 H 1.08998 * 113.61196 * 334.56885 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 6 3.8255 2.9384 -0.0012 6 6 5.3277 3.0573 -0.0012 7 8 6.0152 2.0581 -0.0012 8 7 5.9073 4.2741 -0.0022 9 6 7.3678 4.3898 -0.0016 10 6 7.9509 4.8237 1.3536 11 6 7.7828 6.2763 0.8689 12 6 8.9476 7.1901 1.2550 13 7 8.7050 7.7549 2.5848 14 6 9.6189 8.6081 3.1434 15 1 10.5183 8.8650 2.6033 16 6 9.3889 9.1437 4.4032 17 7 8.2927 8.8311 5.0610 18 14 10.6352 10.3082 5.1648 19 1 10.7972 11.4992 4.2928 20 1 10.1580 10.7371 6.5040 21 1 11.9409 9.6145 5.3028 22 6 7.8801 5.7263 -0.5639 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5139 -0.8898 27 1 1.8933 -0.5138 0.8901 28 1 3.8333 0.9767 -0.8907 29 1 3.8340 0.9765 0.8892 30 1 3.4229 3.4222 0.8888 31 1 3.4223 3.4216 -0.8912 32 1 5.3576 5.0732 -0.0033 33 1 7.8616 3.5177 -0.4303 34 1 7.3171 4.5694 2.2032 35 1 8.9904 4.5286 1.4963 36 1 6.8100 6.7073 1.1060 37 1 9.8726 6.6137 1.2682 38 1 9.0327 7.9973 0.5275 39 1 7.8974 7.5239 3.0699 40 1 8.1317 9.2056 5.9412 41 1 8.9003 5.6774 -0.9445 42 1 7.1892 6.2000 -1.2613 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755207443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:44 Heat of formation + Delta-G solvation = -65.506817 kcal Electronic energy + Delta-G solvation = -20042.340906 eV Core-core repulsion = 16830.059249 eV Total energy + Delta-G solvation = -3212.281658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.29231 -38.67775 -37.94605 -34.54122 -33.26789 -32.62293 -30.93696 -30.31873 -26.85904 -25.50701 -24.34671 -23.12984 -23.06528 -21.41434 -20.62761 -19.08505 -17.68769 -17.03298 -16.71807 -16.23444 -15.96485 -15.39168 -14.97928 -14.56219 -14.38161 -14.12046 -13.78254 -13.59775 -13.31983 -12.80875 -12.70539 -12.43917 -12.30324 -12.15753 -11.99718 -11.62711 -11.39017 -11.34406 -11.02813 -10.80756 -10.48963 -10.36264 -10.10220 -9.99052 -9.89044 -9.82512 -9.60053 -9.02777 -8.82989 -6.89165 -5.74649 -3.02876 2.49533 2.80740 3.45120 3.49222 3.50459 3.60561 4.51620 4.58965 4.66154 4.70067 4.76800 4.78306 4.84417 4.97005 5.06377 5.11397 5.14337 5.22536 5.35923 5.51216 5.52771 5.59322 5.60447 5.73216 5.77549 5.86520 5.93671 6.01450 6.11448 6.24177 6.31449 6.42911 6.62818 6.79331 6.88245 6.94426 7.40262 7.70888 8.10159 8.44646 9.55429 10.14722 10.49138 11.48305 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.030129 B = 0.002637 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.129121 B =10615.870362 C =11267.766702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.394 6.394 4 C 0.079 3.921 5 C -0.141 4.141 6 C 0.520 3.480 7 O -0.545 6.545 8 N -0.707 5.707 9 C 0.115 3.885 10 C -0.139 4.139 11 C -0.113 4.113 12 C 0.162 3.838 13 N -0.732 5.732 14 C -0.239 4.239 15 H 0.069 0.931 16 C -0.016 4.016 17 N -0.935 5.935 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.138 4.138 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.403 0.597 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.020 0.980 38 H 0.018 0.982 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.094 0.906 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.595 -14.967 -13.499 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.313 6.313 4 C 0.002 3.998 5 C -0.181 4.181 6 C 0.307 3.693 7 O -0.422 6.422 8 N -0.358 5.358 9 C 0.010 3.990 10 C -0.177 4.177 11 C -0.132 4.132 12 C 0.034 3.966 13 N -0.376 5.376 14 C -0.371 4.371 15 H 0.087 0.913 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.176 4.176 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.238 0.762 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.113 0.887 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.073 -15.426 -13.470 23.774 hybrid contribution 0.335 0.867 0.738 1.187 sum -11.739 -14.559 -12.732 22.625 Atomic orbital electron populations 1.21751 0.93693 1.02259 1.03174 1.22450 0.95502 0.83565 1.00288 1.87808 1.21170 1.26777 1.95588 1.22097 0.80620 0.95364 1.01751 1.21476 0.92452 0.98273 1.05868 1.20369 0.90005 0.83350 0.75617 1.90711 1.65377 1.36424 1.49725 1.45675 1.07312 1.08120 1.74694 1.21953 0.79814 0.98866 0.98405 1.23455 1.01703 0.96093 0.96473 1.22808 1.00597 0.95261 0.94507 1.20641 0.93959 0.93573 0.88388 1.42341 1.25072 1.54881 1.15281 1.19204 1.00200 1.18818 0.98832 0.91288 1.24743 0.97836 1.01123 0.97436 1.69645 1.26216 1.48344 1.14136 0.86258 0.80645 0.80854 0.78378 1.21303 1.21703 1.21290 1.23304 1.02010 0.95001 0.97299 0.91857 0.91094 0.91775 0.93342 0.93251 0.92477 0.92333 0.87770 0.87988 0.76209 0.88393 0.91319 0.89134 0.89396 0.96227 0.96407 0.78340 0.93501 0.88706 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.39 -4.02 10.34 -35.23 -0.36 -4.39 16 4 C 0.08 0.79 5.23 37.16 0.19 0.98 16 5 C -0.14 -1.28 6.07 -27.89 -0.17 -1.45 16 6 C 0.52 6.22 7.83 -10.99 -0.09 6.14 16 7 O -0.54 -8.53 15.60 5.55 0.09 -8.45 16 8 N -0.71 -7.78 5.26 -53.02 -0.28 -8.06 16 9 C 0.11 1.44 4.30 -67.12 -0.29 1.15 16 10 C -0.14 -2.06 7.45 -25.78 -0.19 -2.26 16 11 C -0.11 -1.73 3.65 -89.67 -0.33 -2.06 16 12 C 0.16 3.22 6.10 -4.04 -0.02 3.20 16 13 N -0.73 -18.67 5.60 -59.90 -0.34 -19.01 16 14 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 15 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 16 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 17 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 18 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 C -0.14 -1.64 7.38 -25.92 -0.19 -1.83 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 29 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.40 3.56 8.70 -40.82 -0.36 3.20 16 33 H 0.10 1.30 7.50 -51.93 -0.39 0.91 16 34 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 35 H 0.09 1.38 7.90 -51.93 -0.41 0.97 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.38 10.27 7.67 -40.82 -0.31 9.96 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 350.79 15.07 5.29 5.29 Total: -1.00 -33.39 350.79 -7.94 -41.33 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -7.33 Total: 6.99 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -0.70 Total: -3.48 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.11 Total: -54.90 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.28 Total: -12.83 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.39 -7.94 -41.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755207443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.177 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds