Wall clock time and date at job start Mon Mar 30 2020 01:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.46928 * 2 1 4 4 C 1.42904 * 113.99737 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47083 * 30.00549 * 4 3 2 6 6 C 1.53001 * 109.47402 * 270.00126 * 4 3 2 7 7 C 1.50700 * 109.46838 * 150.00267 * 4 3 2 8 8 O 1.21277 * 120.00376 * 4.99566 * 7 4 3 9 9 N 1.34779 * 120.00118 * 185.00649 * 7 4 3 10 10 C 1.46493 * 120.00243 * 180.02562 * 9 7 4 11 11 H 1.08998 * 109.47199 * 324.99432 * 10 9 7 12 12 C 1.53001 * 109.47351 * 84.99647 * 10 9 7 13 13 C 1.53000 * 109.47234 * 204.99386 * 10 9 7 14 14 C 1.53497 * 114.21011 * 179.97438 * 13 10 9 15 15 N 1.47062 * 87.98453 * 87.52026 * 14 13 10 16 16 C 1.36943 * 136.05579 * 207.08745 * 15 14 13 17 17 H 1.08002 * 119.99788 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99622 * 180.27778 * 16 15 14 19 19 N 1.31614 * 120.00467 * 359.72375 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 179.72266 * 18 16 15 21 21 H 1.48504 * 109.47306 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47021 * 119.99661 * 20 18 16 23 23 H 1.48501 * 109.47039 * 240.00078 * 20 18 16 24 24 C 1.47067 * 87.88602 * 27.34481 * 15 14 13 25 25 H 1.08998 * 109.46715 * 300.00057 * 1 2 3 26 26 H 1.08997 * 109.47114 * 59.99844 * 1 2 3 27 27 H 1.08996 * 109.47131 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47448 * 240.00067 * 2 1 3 29 29 H 1.08997 * 109.47114 * 120.00156 * 2 1 3 30 30 H 1.09000 * 109.46800 * 60.00247 * 6 4 3 31 31 H 1.09000 * 109.46844 * 180.02562 * 6 4 3 32 32 H 1.08999 * 109.46973 * 299.99986 * 6 4 3 33 33 H 0.97004 * 119.99862 * 359.97438 * 9 7 4 34 34 H 1.08992 * 109.47432 * 60.00046 * 12 10 9 35 35 H 1.08998 * 109.47015 * 180.02562 * 12 10 9 36 36 H 1.09004 * 109.46828 * 299.99948 * 12 10 9 37 37 H 1.08998 * 113.28063 * 46.93168 * 13 10 9 38 38 H 1.09000 * 113.46436 * 332.73654 * 14 13 10 39 39 H 1.08997 * 113.51966 * 202.31439 * 14 13 10 40 40 H 0.96995 * 120.00147 * 180.02562 * 19 18 16 41 41 H 1.08994 * 113.46653 * 87.43736 * 24 15 14 42 42 H 1.08996 * 113.46465 * 217.87717 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6016 -0.5130 6 6 3.9388 1.5005 1.4433 7 6 3.8348 2.7263 -0.7098 8 8 2.9865 3.5046 -1.0913 9 7 5.1387 2.9938 -0.9214 10 6 5.5313 4.2249 -1.6115 11 1 4.7924 4.4643 -2.3762 12 6 5.6108 5.3721 -0.6023 13 6 6.8992 4.0276 -2.2680 14 6 7.4171 5.2580 -3.0256 15 7 8.0031 5.7258 -1.7605 16 6 8.3270 6.9384 -1.2128 17 1 8.1475 7.8471 -1.7683 18 6 8.8918 6.9992 0.0538 19 7 9.1110 5.8918 0.7304 20 14 9.3408 8.6527 0.7978 21 1 8.9968 9.7356 -0.1584 22 1 8.5851 8.8487 2.0610 23 1 10.7979 8.6884 1.0820 24 6 8.0943 4.3180 -1.3452 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 3.6467 0.5847 1.9570 31 1 5.0253 1.5871 1.4436 32 1 3.5061 2.3591 1.9568 33 1 5.8172 2.3714 -0.6161 34 1 6.3497 5.1329 0.1624 35 1 5.9025 6.2882 -1.1158 36 1 4.6363 5.5127 -0.1346 37 1 6.9792 3.0939 -2.8246 38 1 6.6225 5.9030 -3.4007 39 1 8.1603 5.0193 -3.7864 40 1 9.5053 5.9343 1.6156 41 1 9.0161 3.8306 -1.6626 42 1 7.8767 4.1622 -0.2886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755369424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:34 Heat of formation + Delta-G solvation = -24.250421 kcal Electronic energy + Delta-G solvation = -21624.070077 eV Core-core repulsion = 18413.577430 eV Total energy + Delta-G solvation = -3210.492646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.97596 -38.75530 -37.52328 -34.35352 -32.65453 -32.09609 -30.47859 -29.10093 -27.65638 -24.77061 -24.66565 -23.85726 -22.84696 -21.46120 -19.95300 -18.65374 -17.08387 -16.98018 -16.63568 -15.83547 -15.38156 -14.97993 -14.89309 -14.56982 -13.80482 -13.74718 -13.33966 -13.21204 -12.66705 -12.59090 -12.44901 -12.16744 -12.07263 -11.75143 -11.50897 -11.20831 -11.13324 -11.02378 -10.95204 -10.76152 -10.53237 -10.29896 -9.95654 -9.86222 -9.68208 -9.32881 -9.11952 -8.73819 -8.58993 -6.82265 -5.77762 -3.08726 2.87637 3.02447 3.38943 3.45324 3.46853 3.93396 4.46136 4.70026 4.81352 4.89409 4.98367 5.07881 5.15129 5.29070 5.32484 5.36409 5.40474 5.56213 5.60770 5.62348 5.71723 5.94162 5.97927 6.04466 6.13077 6.33893 6.46366 6.51695 6.64684 6.74548 6.83581 6.97292 7.09881 7.25239 7.28723 7.51153 7.64076 7.87291 7.97307 8.54259 9.03871 9.70435 10.64175 11.39567 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.030585 B = 0.004088 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.250576 B = 6847.904211 C = 7182.595766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.071 3.929 5 H 0.083 0.917 6 C -0.170 4.170 7 C 0.512 3.488 8 O -0.526 6.526 9 N -0.716 5.716 10 C 0.177 3.823 11 H 0.075 0.925 12 C -0.147 4.147 13 C -0.161 4.161 14 C 0.126 3.874 15 N -0.604 5.604 16 C -0.212 4.212 17 H 0.080 0.920 18 C -0.005 4.005 19 N -0.918 5.918 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.292 1.292 24 C 0.158 3.842 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.397 0.603 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.027 0.973 37 H 0.069 0.931 38 H 0.041 0.959 39 H 0.035 0.965 40 H 0.252 0.748 41 H 0.022 0.978 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.061 -13.990 -1.252 17.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.010 3.990 5 H 0.100 0.900 6 C -0.228 4.228 7 C 0.296 3.704 8 O -0.402 6.402 9 N -0.368 5.368 10 C 0.073 3.927 11 H 0.093 0.907 12 C -0.205 4.205 13 C -0.181 4.181 14 C -0.001 4.001 15 N -0.330 5.330 16 C -0.339 4.339 17 H 0.098 0.902 18 C -0.202 4.202 19 N -0.565 5.565 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.219 1.219 24 C 0.032 3.968 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.231 0.769 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.040 0.960 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.690 -12.994 -1.283 16.875 hybrid contribution 1.078 0.235 0.563 1.238 sum -9.612 -12.759 -0.720 15.991 Atomic orbital electron populations 1.21723 0.93583 1.02027 1.03436 1.22567 0.95871 0.83864 0.99941 1.88068 1.18694 1.25929 1.94947 1.21912 0.83402 0.96845 0.96859 0.89954 1.22227 1.02108 1.03476 0.94985 1.20248 0.82978 0.87402 0.79733 1.90698 1.50290 1.48959 1.50204 1.46097 1.06419 1.24554 1.59733 1.20570 0.94178 0.83530 0.94377 0.90665 1.22165 0.99695 0.98753 0.99895 1.23375 0.95664 0.98423 1.00617 1.22344 0.95018 0.92044 0.90670 1.45660 1.72754 1.01534 1.13063 1.18920 1.34500 0.82626 0.97870 0.90225 1.24712 1.01326 0.96974 0.97153 1.69806 1.49028 1.25047 1.12656 0.86113 0.77761 0.83202 0.79122 1.20506 1.21728 1.21901 1.22206 0.91353 0.84730 0.98518 0.91767 0.91676 0.91176 0.93371 0.93318 0.91557 0.90555 0.91006 0.76898 0.90457 0.89641 0.95423 0.91280 0.94030 0.94786 0.93832 0.96015 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.89 16 2 C 0.05 0.52 6.47 37.16 0.24 0.76 16 3 O -0.36 -4.97 9.53 -55.09 -0.52 -5.50 16 4 C 0.07 0.88 3.13 -27.88 -0.09 0.80 16 5 H 0.08 0.78 7.79 -51.93 -0.40 0.38 16 6 C -0.17 -1.83 9.48 37.16 0.35 -1.47 16 7 C 0.51 8.34 7.14 -10.98 -0.08 8.26 16 8 O -0.53 -10.95 16.17 -14.30 -0.23 -11.18 16 9 N -0.72 -10.91 5.04 -53.81 -0.27 -11.18 16 10 C 0.18 3.18 2.76 -67.93 -0.19 2.99 16 11 H 0.08 1.43 7.58 -51.93 -0.39 1.03 16 12 C -0.15 -3.11 8.06 37.16 0.30 -2.81 16 13 C -0.16 -2.85 4.25 -89.97 -0.38 -3.23 16 14 C 0.13 2.49 7.86 -8.51 -0.07 2.43 16 15 N -0.60 -14.55 2.18 -184.61 -0.40 -14.95 16 16 C -0.21 -5.68 9.58 -15.06 -0.14 -5.82 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 19 N -0.92 -25.91 11.50 55.49 0.64 -25.27 16 20 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 C 0.16 3.43 6.41 -8.37 -0.05 3.37 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.05 0.39 7.87 -51.93 -0.41 -0.02 16 30 H 0.07 0.57 7.87 -51.93 -0.41 0.16 16 31 H 0.08 0.75 7.92 -51.93 -0.41 0.33 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.40 5.03 8.38 -40.82 -0.34 4.69 16 34 H 0.08 1.82 6.31 -51.93 -0.33 1.49 16 35 H 0.08 1.99 5.93 -51.93 -0.31 1.68 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.04 0.80 8.12 -51.93 -0.42 0.38 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 1.82 5.70 -51.93 -0.30 1.53 16 LS Contribution 339.04 15.07 5.11 5.11 Total: -1.00 -32.13 339.04 -7.60 -39.72 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.07 Total: 2.30 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 0.18 Total: 4.15 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.04 Total: -51.40 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.76 Total: -16.67 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.13 -7.60 -39.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755369424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.472 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds