Wall clock time and date at job start Mon Mar 30 2020 01:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.46928 * 2 1 4 4 C 1.42904 * 113.99737 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47083 * 30.00549 * 4 3 2 6 6 C 1.53001 * 109.47402 * 270.00126 * 4 3 2 7 7 C 1.50700 * 109.46838 * 150.00267 * 4 3 2 8 8 O 1.21277 * 120.00376 * 4.99566 * 7 4 3 9 9 N 1.34779 * 120.00118 * 185.00649 * 7 4 3 10 10 C 1.46493 * 120.00243 * 180.02562 * 9 7 4 11 11 H 1.08998 * 109.47199 * 324.99432 * 10 9 7 12 12 C 1.53001 * 109.47351 * 84.99647 * 10 9 7 13 13 C 1.53000 * 109.47234 * 204.99386 * 10 9 7 14 14 C 1.53497 * 114.21011 * 179.97438 * 13 10 9 15 15 N 1.47062 * 87.98453 * 87.52026 * 14 13 10 16 16 C 1.36943 * 136.05579 * 207.08745 * 15 14 13 17 17 H 1.08002 * 119.99788 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99622 * 180.27778 * 16 15 14 19 19 N 1.31614 * 120.00467 * 359.72375 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 179.72266 * 18 16 15 21 21 H 1.48504 * 109.47306 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47021 * 119.99661 * 20 18 16 23 23 H 1.48501 * 109.47039 * 240.00078 * 20 18 16 24 24 C 1.47067 * 87.88602 * 27.34481 * 15 14 13 25 25 H 1.08998 * 109.46715 * 300.00057 * 1 2 3 26 26 H 1.08997 * 109.47114 * 59.99844 * 1 2 3 27 27 H 1.08996 * 109.47131 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47448 * 240.00067 * 2 1 3 29 29 H 1.08997 * 109.47114 * 120.00156 * 2 1 3 30 30 H 1.09000 * 109.46800 * 60.00247 * 6 4 3 31 31 H 1.09000 * 109.46844 * 180.02562 * 6 4 3 32 32 H 1.08999 * 109.46973 * 299.99986 * 6 4 3 33 33 H 0.97004 * 119.99862 * 359.97438 * 9 7 4 34 34 H 1.08992 * 109.47432 * 60.00046 * 12 10 9 35 35 H 1.08998 * 109.47015 * 180.02562 * 12 10 9 36 36 H 1.09004 * 109.46828 * 299.99948 * 12 10 9 37 37 H 1.08998 * 113.28063 * 46.93168 * 13 10 9 38 38 H 1.09000 * 113.46436 * 332.73654 * 14 13 10 39 39 H 1.08997 * 113.51966 * 202.31439 * 14 13 10 40 40 H 0.96995 * 120.00147 * 180.02562 * 19 18 16 41 41 H 1.08994 * 113.46653 * 87.43736 * 24 15 14 42 42 H 1.08996 * 113.46465 * 217.87717 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6016 -0.5130 6 6 3.9388 1.5005 1.4433 7 6 3.8348 2.7263 -0.7098 8 8 2.9865 3.5046 -1.0913 9 7 5.1387 2.9938 -0.9214 10 6 5.5313 4.2249 -1.6115 11 1 4.7924 4.4643 -2.3762 12 6 5.6108 5.3721 -0.6023 13 6 6.8992 4.0276 -2.2680 14 6 7.4171 5.2580 -3.0256 15 7 8.0031 5.7258 -1.7605 16 6 8.3270 6.9384 -1.2128 17 1 8.1475 7.8471 -1.7683 18 6 8.8918 6.9992 0.0538 19 7 9.1110 5.8918 0.7304 20 14 9.3408 8.6527 0.7978 21 1 8.9968 9.7356 -0.1584 22 1 8.5851 8.8487 2.0610 23 1 10.7979 8.6884 1.0820 24 6 8.0943 4.3180 -1.3452 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 3.6467 0.5847 1.9570 31 1 5.0253 1.5871 1.4436 32 1 3.5061 2.3591 1.9568 33 1 5.8172 2.3714 -0.6161 34 1 6.3497 5.1329 0.1624 35 1 5.9025 6.2882 -1.1158 36 1 4.6363 5.5127 -0.1346 37 1 6.9792 3.0939 -2.8246 38 1 6.6225 5.9030 -3.4007 39 1 8.1603 5.0193 -3.7864 40 1 9.5053 5.9343 1.6156 41 1 9.0161 3.8306 -1.6626 42 1 7.8767 4.1622 -0.2886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755369424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:34 Heat of formation + Delta-G solvation = -44.882425 kcal Electronic energy + Delta-G solvation = -21624.964747 eV Core-core repulsion = 18413.577430 eV Total energy + Delta-G solvation = -3211.387317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.33738 -40.19544 -38.63755 -35.85517 -34.19615 -33.43153 -31.52276 -30.41388 -29.52644 -26.40462 -26.12379 -25.28559 -23.65635 -23.04573 -21.25801 -20.19041 -18.71483 -18.14658 -17.94045 -16.86128 -16.84548 -16.60509 -16.32276 -15.93648 -15.60976 -15.04472 -14.46502 -14.32623 -14.21344 -13.80291 -13.54592 -13.34474 -13.15710 -12.98409 -12.91828 -12.86621 -12.77199 -12.52845 -12.35183 -12.26415 -12.04780 -11.96168 -11.68968 -11.47169 -11.00389 -10.83711 -10.75637 -10.39006 -10.02112 -8.75575 -7.84087 -5.13435 1.45914 1.47847 1.55697 1.61987 1.91639 2.50686 2.96426 3.38211 3.56910 3.68190 3.77376 3.94024 3.97620 4.04595 4.23237 4.36047 4.41400 4.51840 4.56447 4.62469 4.74210 4.80148 4.87748 4.90078 4.91181 5.04655 5.05151 5.12499 5.15780 5.21760 5.29219 5.31611 5.53274 5.60580 5.69081 5.80396 6.02506 6.17845 6.65464 7.00038 7.29819 7.68105 8.69180 9.32808 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.030585 B = 0.004088 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.250576 B = 6847.904211 C = 7182.595766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.394 6.394 4 C 0.077 3.923 5 H 0.121 0.879 6 C -0.166 4.166 7 C 0.508 3.492 8 O -0.578 6.578 9 N -0.704 5.704 10 C 0.185 3.815 11 H 0.072 0.928 12 C -0.128 4.128 13 C -0.127 4.127 14 C 0.123 3.877 15 N -0.631 5.631 16 C -0.214 4.214 17 H 0.076 0.924 18 C -0.057 4.057 19 N -0.942 5.942 20 Si 0.962 3.038 21 H -0.271 1.271 22 H -0.296 1.296 23 H -0.295 1.295 24 C 0.157 3.843 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.413 0.587 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.016 0.984 37 H 0.111 0.889 38 H 0.045 0.955 39 H 0.054 0.946 40 H 0.245 0.755 41 H 0.019 0.981 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.228 -16.104 -1.937 19.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.313 6.313 4 C 0.016 3.984 5 H 0.139 0.861 6 C -0.224 4.224 7 C 0.294 3.706 8 O -0.457 6.457 9 N -0.357 5.357 10 C 0.081 3.919 11 H 0.090 0.910 12 C -0.187 4.187 13 C -0.147 4.147 14 C -0.003 4.003 15 N -0.358 5.358 16 C -0.342 4.342 17 H 0.094 0.906 18 C -0.250 4.250 19 N -0.591 5.591 20 Si 0.792 3.208 21 H -0.196 1.196 22 H -0.224 1.224 23 H -0.222 1.222 24 C 0.032 3.968 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.116 0.884 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.250 0.750 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.035 0.965 37 H 0.129 0.871 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.037 0.963 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.846 -15.143 -1.989 18.732 hybrid contribution 1.072 0.877 0.735 1.568 sum -9.774 -14.266 -1.254 17.339 Atomic orbital electron populations 1.21771 0.93260 1.03458 1.02320 1.22850 0.96261 0.82255 1.01634 1.88039 1.19369 1.28716 1.95162 1.21956 0.83416 0.95567 0.97457 0.86137 1.22225 1.02496 1.03767 0.93870 1.21094 0.82391 0.88280 0.78812 1.90674 1.51627 1.50987 1.52376 1.45906 1.06913 1.23689 1.59157 1.20287 0.94476 0.83693 0.93491 0.90997 1.21918 0.97906 0.99229 0.99630 1.23121 0.93351 0.99437 0.98783 1.22549 0.95289 0.92689 0.89777 1.45920 1.72912 1.01651 1.15282 1.19140 1.33177 0.83936 0.97944 0.90591 1.25334 1.02336 0.99549 0.97809 1.69944 1.50249 1.26361 1.12551 0.85249 0.76931 0.80526 0.78111 1.19551 1.22385 1.22202 1.22180 0.92855 0.83775 0.98015 0.92578 0.93118 0.88446 0.91932 0.91183 0.88802 0.89555 0.93545 0.75017 0.93006 0.92016 0.96526 0.87061 0.93656 0.92869 0.94563 0.96289 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 10.28 71.98 0.74 -1.56 16 2 C 0.05 0.76 6.47 71.98 0.47 1.22 16 3 O -0.39 -10.32 9.53 -129.99 -1.24 -11.56 16 4 C 0.08 1.73 3.13 29.85 0.09 1.82 16 5 H 0.12 1.78 7.79 -2.39 -0.02 1.77 16 6 C -0.17 -3.19 9.48 71.98 0.68 -2.51 16 7 C 0.51 15.94 7.14 87.66 0.63 16.57 16 8 O -0.58 -24.13 16.17 15.97 0.26 -23.87 16 9 N -0.70 -20.26 5.04 -442.55 -2.23 -22.49 16 10 C 0.18 6.46 2.76 44.99 0.12 6.59 16 11 H 0.07 2.65 7.58 -2.39 -0.02 2.63 16 12 C -0.13 -5.55 8.06 71.98 0.58 -4.97 16 13 C -0.13 -4.21 4.25 -10.37 -0.04 -4.25 16 14 C 0.12 4.63 7.86 83.18 0.65 5.28 16 15 N -0.63 -30.24 2.18 -737.98 -1.61 -31.85 16 16 C -0.21 -11.53 9.58 84.03 0.81 -10.73 16 17 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 18 C -0.06 -3.13 5.50 84.86 0.47 -2.66 16 19 N -0.94 -54.09 11.50 21.65 0.25 -53.85 16 20 Si 0.96 45.51 29.55 68.60 2.03 47.54 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 22 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 23 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 24 C 0.16 6.71 6.41 83.27 0.53 7.24 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 0.85 8.09 -2.39 -0.02 0.83 16 29 H 0.07 0.85 7.87 -2.39 -0.02 0.84 16 30 H 0.09 1.30 7.87 -2.39 -0.02 1.28 16 31 H 0.09 1.47 7.92 -2.39 -0.02 1.45 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.41 9.38 8.38 -92.71 -0.78 8.60 16 34 H 0.05 2.50 6.31 -2.39 -0.02 2.48 16 35 H 0.06 2.93 5.93 -2.39 -0.01 2.92 16 36 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.05 1.68 8.12 -2.39 -0.02 1.66 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 41 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.05 2.54 5.70 -2.39 -0.01 2.52 16 Total: -1.00 -71.67 339.04 3.40 -68.26 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.22 Total: 15.77 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 5.73 Total: 12.04 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -3.59 Total: -108.19 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.98 Total: -35.43 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -71.67 3.40 -68.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755369424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.380 kcal (2) G-P(sol) polarization free energy of solvation -71.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds