Wall clock time and date at job start Mon Mar 30 2020 01:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47147 * 2 1 4 4 C 1.42890 * 113.99978 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47455 * 329.99531 * 4 3 2 6 6 C 1.53006 * 109.47440 * 89.99835 * 4 3 2 7 7 C 1.50703 * 109.47324 * 209.99939 * 4 3 2 8 8 O 1.21283 * 119.99488 * 354.99756 * 7 4 3 9 9 N 1.34777 * 120.00290 * 175.00196 * 7 4 3 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 4 11 11 H 1.09004 * 109.47372 * 34.71852 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72131 * 10 9 7 13 13 C 1.52999 * 109.46963 * 154.72290 * 10 9 7 14 14 C 1.53946 * 113.74100 * 276.66964 * 13 10 9 15 15 N 1.47578 * 86.11976 * 222.05046 * 14 13 10 16 16 C 1.36941 * 134.49460 * 204.64177 * 15 14 13 17 17 H 1.07997 * 119.99983 * 179.97438 * 16 15 14 18 18 C 1.38815 * 119.99711 * 0.02562 * 16 15 14 19 19 N 1.31617 * 119.99839 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99652 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46857 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46840 * 119.99776 * 20 18 16 23 23 H 1.48499 * 109.46693 * 239.99898 * 20 18 16 24 24 C 1.47582 * 91.01613 * 24.64178 * 15 14 13 25 25 H 1.09002 * 109.47216 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47296 * 300.00385 * 1 2 3 27 27 H 1.09006 * 109.46985 * 60.00192 * 1 2 3 28 28 H 1.08996 * 109.47296 * 239.99615 * 2 1 3 29 29 H 1.09003 * 109.46641 * 119.99416 * 2 1 3 30 30 H 1.08994 * 109.47164 * 179.97438 * 6 4 3 31 31 H 1.08993 * 109.46605 * 300.00233 * 6 4 3 32 32 H 1.08997 * 109.46652 * 59.99965 * 6 4 3 33 33 H 0.97001 * 119.99727 * 359.97438 * 9 7 4 34 34 H 1.09009 * 109.47238 * 300.00198 * 12 10 9 35 35 H 1.08997 * 109.47293 * 60.00168 * 12 10 9 36 36 H 1.09003 * 109.47189 * 180.02562 * 12 10 9 37 37 H 1.08995 * 112.94648 * 48.40438 * 13 10 9 38 38 H 1.08997 * 113.76906 * 336.35314 * 14 13 10 39 39 H 1.08997 * 113.76808 * 107.74821 * 14 13 10 40 40 H 0.97004 * 119.99478 * 180.02562 * 19 18 16 41 41 H 1.08999 * 113.77246 * 221.06204 * 24 15 14 42 42 H 1.09000 * 113.77166 * 89.66027 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8631 0.6017 0.5148 6 6 3.9399 1.5001 -1.4417 7 6 3.8342 2.7265 0.7110 8 8 2.9855 3.5049 1.0914 9 7 5.1379 2.9940 0.9234 10 6 5.5297 4.2222 1.6194 11 1 4.7881 4.4600 2.3821 12 6 5.6146 5.3728 0.6145 13 6 6.8947 4.0206 2.2803 14 6 6.8223 3.3280 3.6533 15 7 7.8325 4.3110 4.0905 16 6 8.7857 4.3351 5.0733 17 1 9.4198 5.2016 5.1895 18 6 8.9377 3.2453 5.9197 19 7 8.1652 2.1892 5.7777 20 14 10.2385 3.2780 7.2600 21 1 10.9694 4.5696 7.2090 22 1 9.5867 3.1295 8.5860 23 1 11.1937 2.1606 7.0499 24 6 7.4029 5.2576 3.0429 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.0264 1.5866 -1.4412 31 1 3.6482 0.5842 -1.9554 32 1 3.5077 2.3585 -1.9558 33 1 5.8166 2.3713 0.6194 34 1 6.3561 5.1351 -0.1483 35 1 4.6421 5.5165 0.1436 36 1 5.9065 6.2866 1.1323 37 1 7.6332 3.5865 1.6064 38 1 5.8585 3.4378 4.1504 39 1 7.1840 2.2998 3.6463 40 1 8.2712 1.4278 6.3694 41 1 8.2281 5.7701 2.5485 42 1 6.6097 5.9343 3.3607 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755369425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:36 Heat of formation + Delta-G solvation = -37.781922 kcal Electronic energy + Delta-G solvation = -21164.318302 eV Core-core repulsion = 17953.238885 eV Total energy + Delta-G solvation = -3211.079416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.00440 -38.44618 -37.49840 -34.72974 -32.82369 -32.06380 -30.71934 -29.62530 -27.50813 -25.15408 -24.46446 -23.78896 -22.85592 -21.31596 -20.21264 -19.04988 -17.23671 -17.06060 -16.67351 -15.93157 -15.65958 -15.03333 -14.88670 -14.30462 -13.84394 -13.60131 -13.51723 -13.29206 -12.99110 -12.66382 -12.51713 -12.33650 -12.14576 -12.06761 -11.65558 -11.53095 -11.31403 -11.28712 -11.19874 -10.90987 -10.71812 -10.33528 -10.00660 -9.89803 -9.74212 -9.46626 -9.28752 -8.79599 -8.76626 -6.86563 -5.76311 -3.08400 2.78228 2.92076 3.38795 3.44123 3.46695 3.85284 4.45538 4.62994 4.76350 4.83974 4.92329 5.05145 5.12183 5.16424 5.26323 5.30444 5.31218 5.49044 5.54134 5.55813 5.68223 5.71225 5.82775 5.88060 5.94488 5.96185 6.05590 6.26750 6.37962 6.43178 6.60238 6.68012 6.81246 6.98326 7.24457 7.37572 7.56906 7.70882 7.99070 8.41762 9.05562 9.71589 10.61170 11.40822 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024851 B = 0.003808 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.456986 B = 7351.311278 C = 8067.065376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.069 3.931 5 H 0.086 0.914 6 C -0.168 4.168 7 C 0.514 3.486 8 O -0.524 6.524 9 N -0.716 5.716 10 C 0.152 3.848 11 H 0.087 0.913 12 C -0.158 4.158 13 C -0.146 4.146 14 C 0.170 3.830 15 N -0.613 5.613 16 C -0.222 4.222 17 H 0.080 0.920 18 C -0.009 4.009 19 N -0.921 5.921 20 Si 0.911 3.089 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.130 3.870 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.398 0.602 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.026 0.974 39 H 0.071 0.929 40 H 0.252 0.748 41 H 0.044 0.956 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.022 -4.120 -15.658 18.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.008 3.992 5 H 0.104 0.896 6 C -0.226 4.226 7 C 0.298 3.702 8 O -0.399 6.399 9 N -0.368 5.368 10 C 0.047 3.953 11 H 0.105 0.895 12 C -0.216 4.216 13 C -0.166 4.166 14 C 0.045 3.955 15 N -0.339 5.339 16 C -0.349 4.349 17 H 0.098 0.902 18 C -0.206 4.206 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.003 3.997 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.232 0.768 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.044 0.956 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.584 -3.505 -15.091 18.217 hybrid contribution 1.140 -0.616 0.727 1.486 sum -8.444 -4.121 -14.364 17.164 Atomic orbital electron populations 1.21724 0.93535 1.02110 1.03388 1.22587 0.95897 0.83702 1.00102 1.88050 1.18526 1.26152 1.94938 1.21911 0.83634 0.97032 0.96652 0.89572 1.22214 1.01734 1.03489 0.95173 1.20294 0.82912 0.87384 0.79595 1.90706 1.50199 1.48942 1.50044 1.46032 1.06638 1.24499 1.59662 1.21095 0.97268 0.83103 0.93839 0.89481 1.22131 1.01481 0.98574 0.99450 1.23819 0.94024 1.00866 0.97910 1.22268 0.91218 0.95908 0.86154 1.45966 1.36772 1.14897 1.36269 1.19082 1.08125 1.01027 1.06701 0.90215 1.24786 0.99621 0.96542 0.99605 1.69832 1.40693 1.06074 1.40280 0.86053 0.80772 0.77331 0.81659 1.20466 1.21751 1.21729 1.22503 0.95993 0.92333 0.88848 0.91111 0.91592 0.91868 0.93335 0.93100 0.90829 0.91447 0.91186 0.76751 0.92742 0.92779 0.91414 0.89387 0.95646 0.91055 0.93754 0.93746 0.94720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.90 16 2 C 0.05 0.52 6.47 37.16 0.24 0.76 16 3 O -0.36 -4.80 9.53 -55.09 -0.52 -5.33 16 4 C 0.07 0.81 3.13 -27.88 -0.09 0.72 16 5 H 0.09 0.84 7.79 -51.93 -0.40 0.44 16 6 C -0.17 -1.47 9.48 37.16 0.35 -1.12 16 7 C 0.51 7.76 7.15 -10.98 -0.08 7.68 16 8 O -0.52 -10.26 16.17 -14.31 -0.23 -10.49 16 9 N -0.72 -9.73 5.04 -53.81 -0.27 -10.00 16 10 C 0.15 2.36 2.42 -67.93 -0.16 2.20 16 11 H 0.09 1.60 7.37 -51.93 -0.38 1.22 16 12 C -0.16 -2.14 9.29 37.16 0.35 -1.79 16 13 C -0.15 -2.60 3.50 -89.69 -0.31 -2.92 16 14 C 0.17 3.97 7.07 -2.98 -0.02 3.95 16 15 N -0.61 -15.78 3.70 -177.89 -0.66 -16.44 16 16 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 17 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 19 N -0.92 -27.43 11.38 55.49 0.63 -26.80 16 20 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 C 0.13 2.61 7.56 -2.97 -0.02 2.59 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.37 7.87 -51.93 -0.41 -0.04 16 29 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.07 0.52 7.92 -51.93 -0.41 0.11 16 31 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.40 4.36 8.39 -40.82 -0.34 4.02 16 34 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.89 7.43 -51.93 -0.39 0.50 16 37 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.03 0.64 7.96 -51.93 -0.41 0.22 16 39 H 0.07 1.82 7.15 -51.93 -0.37 1.45 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.04 0.69 8.06 -51.93 -0.42 0.27 16 LS Contribution 346.40 15.07 5.22 5.22 Total: -1.00 -34.44 346.40 -7.78 -42.22 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -7.29 Total: 0.03 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 0.38 Total: 4.39 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.30 Total: -53.24 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.76 Total: -15.82 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.44 -7.78 -42.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755369425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.437 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds