Wall clock time and date at job start Mon Mar 30 2020 01:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47147 * 2 1 4 4 C 1.42890 * 113.99978 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47455 * 329.99531 * 4 3 2 6 6 C 1.53006 * 109.47440 * 89.99835 * 4 3 2 7 7 C 1.50703 * 109.47324 * 209.99939 * 4 3 2 8 8 O 1.21283 * 119.99488 * 354.99756 * 7 4 3 9 9 N 1.34777 * 120.00290 * 175.00196 * 7 4 3 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 4 11 11 H 1.09004 * 109.47372 * 34.71852 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72131 * 10 9 7 13 13 C 1.52999 * 109.46963 * 154.72290 * 10 9 7 14 14 C 1.53946 * 113.74100 * 276.66964 * 13 10 9 15 15 N 1.47578 * 86.11976 * 222.05046 * 14 13 10 16 16 C 1.36941 * 134.49460 * 204.64177 * 15 14 13 17 17 H 1.07997 * 119.99983 * 179.97438 * 16 15 14 18 18 C 1.38815 * 119.99711 * 0.02562 * 16 15 14 19 19 N 1.31617 * 119.99839 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99652 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46857 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46840 * 119.99776 * 20 18 16 23 23 H 1.48499 * 109.46693 * 239.99898 * 20 18 16 24 24 C 1.47582 * 91.01613 * 24.64178 * 15 14 13 25 25 H 1.09002 * 109.47216 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47296 * 300.00385 * 1 2 3 27 27 H 1.09006 * 109.46985 * 60.00192 * 1 2 3 28 28 H 1.08996 * 109.47296 * 239.99615 * 2 1 3 29 29 H 1.09003 * 109.46641 * 119.99416 * 2 1 3 30 30 H 1.08994 * 109.47164 * 179.97438 * 6 4 3 31 31 H 1.08993 * 109.46605 * 300.00233 * 6 4 3 32 32 H 1.08997 * 109.46652 * 59.99965 * 6 4 3 33 33 H 0.97001 * 119.99727 * 359.97438 * 9 7 4 34 34 H 1.09009 * 109.47238 * 300.00198 * 12 10 9 35 35 H 1.08997 * 109.47293 * 60.00168 * 12 10 9 36 36 H 1.09003 * 109.47189 * 180.02562 * 12 10 9 37 37 H 1.08995 * 112.94648 * 48.40438 * 13 10 9 38 38 H 1.08997 * 113.76906 * 336.35314 * 14 13 10 39 39 H 1.08997 * 113.76808 * 107.74821 * 14 13 10 40 40 H 0.97004 * 119.99478 * 180.02562 * 19 18 16 41 41 H 1.08999 * 113.77246 * 221.06204 * 24 15 14 42 42 H 1.09000 * 113.77166 * 89.66027 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8631 0.6017 0.5148 6 6 3.9399 1.5001 -1.4417 7 6 3.8342 2.7265 0.7110 8 8 2.9855 3.5049 1.0914 9 7 5.1379 2.9940 0.9234 10 6 5.5297 4.2222 1.6194 11 1 4.7881 4.4600 2.3821 12 6 5.6146 5.3728 0.6145 13 6 6.8947 4.0206 2.2803 14 6 6.8223 3.3280 3.6533 15 7 7.8325 4.3110 4.0905 16 6 8.7857 4.3351 5.0733 17 1 9.4198 5.2016 5.1895 18 6 8.9377 3.2453 5.9197 19 7 8.1652 2.1892 5.7777 20 14 10.2385 3.2780 7.2600 21 1 10.9694 4.5696 7.2090 22 1 9.5867 3.1295 8.5860 23 1 11.1937 2.1606 7.0499 24 6 7.4029 5.2576 3.0429 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.0264 1.5866 -1.4412 31 1 3.6482 0.5842 -1.9554 32 1 3.5077 2.3585 -1.9558 33 1 5.8166 2.3713 0.6194 34 1 6.3561 5.1351 -0.1483 35 1 4.6421 5.5165 0.1436 36 1 5.9065 6.2866 1.1323 37 1 7.6332 3.5865 1.6064 38 1 5.8585 3.4378 4.1504 39 1 7.1840 2.2998 3.6463 40 1 8.2712 1.4278 6.3694 41 1 8.2281 5.7701 2.5485 42 1 6.6097 5.9343 3.3607 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755369425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:36 Heat of formation + Delta-G solvation = -61.401543 kcal Electronic energy + Delta-G solvation = -21165.342525 eV Core-core repulsion = 17953.238885 eV Total energy + Delta-G solvation = -3212.103640 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.21405 -39.89558 -38.64873 -36.15900 -34.26811 -33.48240 -31.80005 -30.61624 -29.34147 -26.68994 -25.81529 -25.26908 -23.66050 -22.80262 -21.44415 -20.59623 -18.79108 -18.21399 -18.10367 -16.98802 -16.91837 -16.66382 -16.12837 -15.72539 -15.51566 -14.93175 -14.69655 -14.30816 -14.20102 -13.97702 -13.45900 -13.34008 -13.25533 -13.16860 -13.08829 -12.91114 -12.85654 -12.69805 -12.52373 -12.27358 -12.01207 -11.95703 -11.74512 -11.48150 -11.23928 -10.94344 -10.87363 -10.40488 -10.03783 -8.92312 -7.91016 -5.24663 1.45168 1.46471 1.56653 1.61631 1.89715 2.47017 2.95041 3.30107 3.38245 3.64859 3.79006 3.94886 3.97591 4.06661 4.21050 4.30683 4.34623 4.49209 4.50342 4.59731 4.64741 4.74932 4.81843 4.83330 4.87152 4.90820 5.01934 5.02717 5.10840 5.22566 5.25875 5.27159 5.34165 5.48486 5.56445 5.67197 5.93756 6.14844 6.62128 6.91920 7.28259 7.60589 8.56448 9.26005 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024851 B = 0.003808 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.456986 B = 7351.311278 C = 8067.065376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.393 6.393 4 C 0.070 3.930 5 H 0.107 0.893 6 C -0.161 4.161 7 C 0.508 3.492 8 O -0.577 6.577 9 N -0.705 5.705 10 C 0.159 3.841 11 H 0.054 0.946 12 C -0.149 4.149 13 C -0.107 4.107 14 C 0.166 3.834 15 N -0.645 5.645 16 C -0.235 4.235 17 H 0.085 0.915 18 C -0.069 4.069 19 N -0.954 5.954 20 Si 0.979 3.021 21 H -0.264 1.264 22 H -0.296 1.296 23 H -0.289 1.289 24 C 0.129 3.871 25 H 0.095 0.905 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.415 0.585 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.000 1.000 39 H 0.044 0.956 40 H 0.248 0.752 41 H 0.067 0.933 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.888 -4.391 -17.493 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.312 6.312 4 C 0.009 3.991 5 H 0.125 0.875 6 C -0.218 4.218 7 C 0.295 3.705 8 O -0.456 6.456 9 N -0.358 5.358 10 C 0.054 3.946 11 H 0.072 0.928 12 C -0.207 4.207 13 C -0.126 4.126 14 C 0.040 3.960 15 N -0.371 5.371 16 C -0.363 4.363 17 H 0.103 0.897 18 C -0.262 4.262 19 N -0.603 5.603 20 Si 0.807 3.193 21 H -0.189 1.189 22 H -0.223 1.223 23 H -0.216 1.216 24 C 0.004 3.996 25 H 0.114 0.886 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.252 0.748 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.018 0.982 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.425 -3.769 -16.968 19.316 hybrid contribution 0.739 -0.517 1.307 1.588 sum -7.687 -4.287 -15.661 17.965 Atomic orbital electron populations 1.21766 0.93103 1.03452 1.02413 1.22831 0.96384 0.82361 1.01413 1.88015 1.19487 1.28493 1.95200 1.22030 0.83384 0.95372 0.98282 0.87494 1.22200 1.02781 1.04042 0.92801 1.21054 0.82521 0.88102 0.78845 1.90679 1.51594 1.50960 1.52347 1.45900 1.06940 1.24174 1.58791 1.20825 0.94797 0.84974 0.94018 0.92772 1.22041 1.01908 0.97545 0.99183 1.23441 0.95580 0.98160 0.95450 1.22165 0.89430 0.94771 0.89632 1.46405 1.36759 1.17199 1.36726 1.19502 1.08608 1.01023 1.07163 0.89725 1.25647 1.02026 0.96410 1.02116 1.70021 1.42516 1.06615 1.41196 0.84999 0.78193 0.77793 0.78279 1.18862 1.22281 1.21577 1.22698 0.96742 0.92681 0.87484 0.88594 0.93387 0.92013 0.90801 0.92856 0.88824 0.89305 0.92459 0.74843 0.90263 0.93496 0.90847 0.87210 0.98248 0.93743 0.94335 0.91495 0.94132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 10.28 71.98 0.74 -1.68 16 2 C 0.05 0.82 6.47 71.98 0.47 1.29 16 3 O -0.39 -10.30 9.53 -129.99 -1.24 -11.54 16 4 C 0.07 1.54 3.13 29.85 0.09 1.63 16 5 H 0.11 1.86 7.79 -2.38 -0.02 1.84 16 6 C -0.16 -2.37 9.48 71.98 0.68 -1.69 16 7 C 0.51 15.18 7.15 87.66 0.63 15.81 16 8 O -0.58 -23.23 16.17 15.95 0.26 -22.97 16 9 N -0.71 -18.30 5.04 -442.53 -2.23 -20.53 16 10 C 0.16 4.83 2.42 44.99 0.11 4.94 16 11 H 0.05 2.04 7.37 -2.39 -0.02 2.02 16 12 C -0.15 -3.69 9.29 71.98 0.67 -3.02 16 13 C -0.11 -3.66 3.50 -10.13 -0.04 -3.69 16 14 C 0.17 7.90 7.07 86.48 0.61 8.51 16 15 N -0.64 -33.22 3.70 -716.72 -2.65 -35.87 16 16 C -0.23 -13.27 10.70 84.03 0.90 -12.37 16 17 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 18 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 19 N -0.95 -58.11 11.38 21.65 0.25 -57.86 16 20 Si 0.98 45.97 29.55 68.60 2.03 47.99 16 21 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 24 C 0.13 5.00 7.56 86.48 0.65 5.66 16 25 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.07 0.93 7.87 -2.39 -0.02 0.91 16 29 H 0.05 0.90 8.08 -2.39 -0.02 0.88 16 30 H 0.09 0.99 7.92 -2.39 -0.02 0.97 16 31 H 0.09 0.95 7.87 -2.39 -0.02 0.93 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.41 8.08 8.39 -92.71 -0.78 7.30 16 34 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.75 7.43 -2.39 -0.02 1.73 16 37 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 38 H 0.00 -0.01 7.96 -2.39 -0.02 -0.03 16 39 H 0.04 2.34 7.15 -2.39 -0.02 2.32 16 40 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 41 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.04 1.55 8.06 -2.39 -0.02 1.53 16 Total: -1.00 -77.25 346.40 2.60 -74.65 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.21 Total: 14.26 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 5.98 Total: 11.87 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -4.63 Total: -114.26 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -0.98 Total: -34.51 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -77.25 2.60 -74.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755369425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.248 kcal (2) G-P(sol) polarization free energy of solvation -77.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds