Wall clock time and date at job start Mon Mar 30 2020 01:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42905 * 109.47406 * 2 1 4 4 C 1.42898 * 114.00327 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47252 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99786 * 359.97438 * 5 4 3 7 7 N 1.34773 * 119.99861 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00000 * 179.97438 * 7 5 4 9 9 H 1.08995 * 110.05547 * 326.41583 * 8 7 5 10 10 C 1.54267 * 110.03218 * 87.82957 * 8 7 5 11 11 C 1.54891 * 104.19324 * 95.67887 * 10 8 7 12 12 C 1.54888 * 102.75120 * 37.94011 * 11 10 8 13 13 H 1.08999 * 110.48451 * 80.73628 * 12 11 10 14 14 C 1.53002 * 110.59937 * 203.32247 * 12 11 10 15 15 N 1.46498 * 109.47340 * 289.84214 * 14 12 11 16 16 C 1.36936 * 120.00105 * 179.97438 * 15 14 12 17 17 H 1.08007 * 119.99789 * 0.02562 * 16 15 14 18 18 C 1.38807 * 120.00105 * 179.97438 * 16 15 14 19 19 N 1.31625 * 119.99821 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00111 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47374 * 90.00024 * 20 18 16 22 22 H 1.48502 * 109.47648 * 210.00250 * 20 18 16 23 23 H 1.48503 * 109.47187 * 330.00068 * 20 18 16 24 24 C 1.53876 * 110.03560 * 204.99827 * 8 7 5 25 25 H 1.09000 * 109.47701 * 300.00909 * 1 2 3 26 26 H 1.09005 * 109.46950 * 60.00742 * 1 2 3 27 27 H 1.09000 * 109.47066 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47614 * 239.99621 * 2 1 3 29 29 H 1.09005 * 109.46950 * 119.99258 * 2 1 3 30 30 H 1.09000 * 109.47069 * 59.99070 * 4 3 2 31 31 H 1.09003 * 109.46697 * 299.99492 * 4 3 2 32 32 H 0.97001 * 120.00044 * 359.97438 * 7 5 4 33 33 H 1.09004 * 110.48597 * 214.35526 * 10 8 7 34 34 H 1.08994 * 110.48679 * 337.00052 * 10 8 7 35 35 H 1.09005 * 110.75269 * 279.62515 * 11 10 8 36 36 H 1.09004 * 110.91555 * 156.33330 * 11 10 8 37 37 H 1.09005 * 109.46735 * 49.84335 * 14 12 11 38 38 H 1.09005 * 109.46685 * 169.84188 * 14 12 11 39 39 H 0.97001 * 119.99869 * 0.02562 * 15 14 12 40 40 H 0.96997 * 119.99398 * 179.97438 * 19 18 16 41 41 H 1.08998 * 110.02768 * 0.02562 * 24 8 7 42 42 H 1.08999 * 110.02894 * 121.37915 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8195 2.9162 -0.0001 6 8 2.9610 3.7729 -0.0015 7 7 5.1209 3.2663 -0.0002 8 6 5.4987 4.6817 -0.0015 9 1 4.7711 5.2623 -0.5685 10 6 5.5818 5.2077 1.4464 11 6 7.0828 5.0865 1.8090 12 6 7.7867 5.4764 0.4855 13 1 7.8219 6.5605 0.3772 14 6 9.1982 4.8883 0.4331 15 7 10.0515 5.5792 1.4030 16 6 11.3664 5.2205 1.5359 17 1 11.7744 4.4285 0.9254 18 6 12.1750 5.8754 2.4546 19 7 11.6778 6.8409 3.1983 20 14 13.9687 5.3866 2.6354 21 1 14.7980 6.1933 1.7044 22 1 14.4107 5.6326 4.0316 23 1 14.1238 3.9451 2.3140 24 6 6.9007 4.8526 -0.6123 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.8340 0.9763 -0.8891 31 1 3.8332 0.9768 0.8909 32 1 5.8075 2.5810 0.0005 33 1 5.2608 6.2484 1.4931 34 1 4.9776 4.5909 2.1116 35 1 7.3305 4.0633 2.0914 36 1 7.3477 5.7807 2.6066 37 1 9.1585 3.8263 0.6756 38 1 9.6085 5.0173 -0.5686 39 1 9.6849 6.2902 1.9516 40 1 12.2428 7.2983 3.8404 41 1 7.2997 3.8824 -0.9083 42 1 6.8531 5.5154 -1.4764 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755726836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:13 Heat of formation + Delta-G solvation = -111.561942 kcal Electronic energy + Delta-G solvation = -20458.155987 eV Core-core repulsion = 17243.877229 eV Total energy + Delta-G solvation = -3214.278758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11458 -39.44532 -38.40534 -36.42525 -34.70667 -32.99599 -32.35104 -30.18005 -29.71148 -27.87269 -26.05113 -23.89423 -23.67163 -22.21940 -21.21394 -20.72829 -19.05758 -18.22147 -17.90005 -17.43084 -17.10745 -16.52910 -16.35208 -15.73450 -15.65720 -15.25554 -14.98605 -14.62314 -14.33320 -14.00515 -13.83834 -13.46044 -13.25036 -13.14056 -12.79781 -12.69948 -12.52018 -12.29301 -12.17943 -12.13933 -12.06409 -11.86042 -11.60133 -11.53121 -11.44905 -10.89275 -10.81676 -10.65328 -10.06989 -8.96221 -7.93320 -5.21491 1.48113 1.49920 1.58181 1.58309 1.86304 2.57536 3.05843 3.40247 3.58629 3.60644 3.79835 3.93086 4.16869 4.17935 4.20508 4.32967 4.36884 4.45561 4.51808 4.52349 4.54673 4.61547 4.70535 4.79660 4.83920 4.94358 5.02219 5.03724 5.10846 5.16563 5.25599 5.27294 5.39230 5.48940 5.56588 5.61980 6.12403 6.29393 6.58791 7.25489 7.35395 8.13919 8.35661 9.30462 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.038734 B = 0.002785 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.706851 B =10050.541607 C =10339.030726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.404 6.404 4 C 0.045 3.955 5 C 0.508 3.492 6 O -0.576 6.576 7 N -0.706 5.706 8 C 0.149 3.851 9 H 0.080 0.920 10 C -0.126 4.126 11 C -0.106 4.106 12 C -0.092 4.092 13 H 0.065 0.935 14 C 0.160 3.840 15 N -0.746 5.746 16 C -0.242 4.242 17 H 0.077 0.923 18 C -0.080 4.080 19 N -0.971 5.971 20 Si 0.974 3.026 21 H -0.288 1.288 22 H -0.297 1.297 23 H -0.268 1.268 24 C -0.108 4.108 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.416 0.584 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.026 0.974 38 H 0.020 0.980 39 H 0.373 0.627 40 H 0.250 0.750 41 H 0.091 0.909 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.009 -15.268 -8.644 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.323 6.323 4 C -0.034 4.034 5 C 0.295 3.705 6 O -0.455 6.455 7 N -0.360 5.360 8 C 0.044 3.956 9 H 0.098 0.902 10 C -0.164 4.164 11 C -0.144 4.144 12 C -0.111 4.111 13 H 0.084 0.916 14 C 0.034 3.966 15 N -0.389 5.389 16 C -0.374 4.374 17 H 0.095 0.905 18 C -0.272 4.272 19 N -0.622 5.622 20 Si 0.803 3.197 21 H -0.215 1.215 22 H -0.224 1.224 23 H -0.192 1.192 24 C -0.146 4.146 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.114 0.886 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.254 0.746 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.044 0.956 38 H 0.038 0.962 39 H 0.205 0.795 40 H 0.059 0.941 41 H 0.109 0.891 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.607 -14.632 -8.712 25.224 hybrid contribution 1.420 0.058 0.687 1.578 sum -17.187 -14.575 -8.025 23.921 Atomic orbital electron populations 1.21783 0.93409 1.03443 1.02366 1.22773 0.96127 0.82034 1.01757 1.87982 1.19841 1.28712 1.95796 1.22336 0.83387 0.92414 1.05263 1.20923 0.82607 0.91664 0.75316 1.90706 1.50858 1.53485 1.50489 1.45999 1.06831 1.08657 1.74542 1.21474 0.96557 0.81581 0.96012 0.90185 1.22707 0.96085 1.01390 0.96245 1.22393 0.94055 1.01135 0.96776 1.22056 0.93649 0.99900 0.95504 0.91645 1.20875 0.89328 0.94756 0.91677 1.42608 1.07978 1.42948 1.45336 1.19661 0.87780 1.14052 1.15896 0.90506 1.25589 1.02586 0.99378 0.99641 1.69827 1.36673 1.27731 1.28002 0.85132 0.80152 0.78114 0.76323 1.21527 1.22378 1.19236 1.22337 0.91894 1.02769 0.97629 0.92899 0.92706 0.88581 0.91394 0.91690 0.87165 0.87671 0.74625 0.91041 0.92001 0.91588 0.93426 0.95566 0.96221 0.79539 0.94115 0.89059 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 71.98 0.74 -1.12 16 2 C 0.05 0.62 6.66 71.98 0.48 1.10 16 3 O -0.40 -8.58 9.88 -129.94 -1.28 -9.86 16 4 C 0.05 0.69 6.42 71.24 0.46 1.15 16 5 C 0.51 11.66 7.90 87.66 0.69 12.36 16 6 O -0.58 -19.43 16.15 16.00 0.26 -19.17 16 7 N -0.71 -13.16 5.03 -439.11 -2.21 -15.37 16 8 C 0.15 3.35 3.25 45.72 0.15 3.50 16 9 H 0.08 2.02 7.57 -2.39 -0.02 2.00 16 10 C -0.13 -3.23 6.54 31.67 0.21 -3.02 16 11 C -0.11 -3.14 6.20 31.89 0.20 -2.94 16 12 C -0.09 -2.74 2.88 -9.72 -0.03 -2.77 16 13 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 14 C 0.16 6.00 5.55 86.38 0.48 6.47 16 15 N -0.75 -37.41 5.49 -343.44 -1.89 -39.29 16 16 C -0.24 -13.39 9.99 84.03 0.84 -12.56 16 17 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 18 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 19 N -0.97 -59.76 13.06 21.65 0.28 -59.47 16 20 Si 0.97 45.93 29.55 68.60 2.03 47.95 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 C -0.11 -2.33 6.14 31.32 0.19 -2.14 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.42 5.20 8.32 -92.71 -0.77 4.43 16 33 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.06 1.64 8.04 -2.39 -0.02 1.62 16 35 H 0.07 1.94 7.97 -2.38 -0.02 1.92 16 36 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.03 0.96 8.03 -2.38 -0.02 0.94 16 38 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.37 20.10 7.64 -92.71 -0.71 19.39 16 40 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 41 H 0.09 1.66 7.32 -2.39 -0.02 1.65 16 42 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -74.72 346.51 1.58 -73.13 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -0.48 Total: 26.18 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 4.87 Total: -4.09 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -3.81 Total: -114.14 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -1.02 Total: -29.03 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -74.72 1.58 -73.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755726836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.429 kcal (2) G-P(sol) polarization free energy of solvation -74.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds