Wall clock time and date at job start Mon Mar 30 2020 01:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47499 * 2 1 4 4 C 1.42896 * 114.00378 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47124 * 180.02562 * 4 3 2 6 6 O 1.21273 * 120.00369 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99763 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00217 * 179.97438 * 7 5 4 9 9 H 1.09003 * 110.67458 * 36.77410 * 8 7 5 10 10 C 1.54891 * 110.75512 * 273.54367 * 8 7 5 11 11 C 1.54263 * 104.19869 * 203.74014 * 10 8 7 12 12 C 1.53873 * 106.59601 * 23.60807 * 11 10 8 13 13 H 1.09004 * 110.03752 * 240.66561 * 12 11 10 14 14 C 1.53005 * 110.03537 * 119.28547 * 12 11 10 15 15 N 1.46505 * 109.46904 * 67.09058 * 14 12 11 16 16 C 1.36931 * 119.99788 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 14 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48498 * 109.47174 * 90.00121 * 20 18 16 22 22 H 1.48501 * 109.47062 * 210.00072 * 20 18 16 23 23 H 1.48504 * 109.46913 * 329.99871 * 20 18 16 24 24 C 1.54269 * 106.64467 * 359.97438 * 12 11 10 25 25 H 1.08997 * 109.47197 * 59.99943 * 1 2 3 26 26 H 1.09001 * 109.47614 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47318 * 300.00134 * 1 2 3 28 28 H 1.08998 * 109.46714 * 239.99861 * 2 1 3 29 29 H 1.09000 * 109.46731 * 120.00235 * 2 1 3 30 30 H 1.08997 * 109.47125 * 59.99613 * 4 3 2 31 31 H 1.09004 * 109.46658 * 300.00033 * 4 3 2 32 32 H 0.97006 * 120.00005 * 359.97438 * 7 5 4 33 33 H 1.09004 * 110.48971 * 85.06152 * 10 8 7 34 34 H 1.09001 * 110.48552 * 322.42004 * 10 8 7 35 35 H 1.08997 * 110.03354 * 264.32662 * 11 10 8 36 36 H 1.08998 * 110.03470 * 142.88871 * 11 10 8 37 37 H 1.09003 * 109.46946 * 307.09817 * 14 12 11 38 38 H 1.08993 * 109.47679 * 187.09360 * 14 12 11 39 39 H 0.97000 * 119.99792 * 0.02562 * 15 14 12 40 40 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 41 41 H 1.09004 * 110.48443 * 95.08771 * 24 12 11 42 42 H 1.09000 * 110.48808 * 217.73994 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8195 2.9161 0.0001 6 8 2.9611 3.7728 0.0005 7 7 5.1210 3.2661 -0.0008 8 6 5.4988 4.6816 -0.0007 9 1 4.8093 5.2639 0.6105 10 6 5.5528 5.2354 -1.4462 11 6 6.5061 6.4446 -1.3528 12 6 7.3992 6.2062 -0.1227 13 1 7.2602 7.0093 0.6011 14 6 8.8673 6.1323 -0.5472 15 7 9.3023 7.4449 -1.0312 16 6 10.5878 7.6218 -1.4684 17 1 11.2810 6.7936 -1.4568 18 6 10.9983 8.8640 -1.9324 19 7 10.1535 9.8731 -1.9471 20 14 12.7499 9.1034 -2.5361 21 1 12.8158 8.8147 -3.9912 22 1 13.1708 10.5061 -2.2902 23 1 13.6554 8.1797 -1.8066 24 6 6.9578 4.8608 0.4897 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8333 0.9766 -0.8907 31 1 3.8340 0.9763 0.8892 32 1 5.8076 2.5809 -0.0015 33 1 4.5621 5.5548 -1.7697 34 1 5.9540 4.4850 -2.1275 35 1 5.9329 7.3630 -1.2256 36 1 7.1185 6.5077 -2.2522 37 1 8.9786 5.3963 -1.3435 38 1 9.4782 5.8392 0.3065 39 1 8.6796 8.1886 -1.0420 40 1 10.4405 10.7412 -2.2710 41 1 7.5861 4.0497 0.1215 42 1 6.9923 4.9075 1.5782 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755726838.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:17 Heat of formation + Delta-G solvation = -88.620694 kcal Electronic energy + Delta-G solvation = -20337.679545 eV Core-core repulsion = 17124.395594 eV Total energy + Delta-G solvation = -3213.283951 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.09845 -38.46719 -37.54544 -34.81585 -33.44210 -31.90078 -31.06270 -28.74537 -28.71561 -26.75870 -24.27723 -23.16363 -22.20012 -21.08357 -20.62846 -19.10929 -17.43049 -17.15396 -17.01032 -16.75486 -16.02923 -15.45864 -14.94923 -14.70318 -14.48759 -13.61556 -13.40535 -13.35285 -13.12317 -13.00140 -12.81682 -12.74466 -12.02767 -11.85181 -11.77591 -11.61830 -11.39933 -11.08751 -10.85776 -10.76912 -10.50710 -10.35123 -10.10637 -10.07393 -9.88441 -9.86168 -9.64679 -9.09365 -8.84804 -6.89096 -5.74284 -3.02648 2.46955 2.59522 3.44472 3.49279 3.51283 3.69152 4.46054 4.59649 4.63157 4.68565 4.75207 4.84528 4.86320 4.89675 4.95756 5.05995 5.28231 5.52755 5.52887 5.57398 5.62860 5.65491 5.71104 5.76286 5.86629 5.93558 6.14437 6.18465 6.30470 6.35875 6.44734 6.57182 6.70150 6.71170 6.84910 6.96373 7.36697 7.71338 8.09910 8.44843 9.55837 10.15085 10.49724 11.48612 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.063831 B = 0.002567 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.553234 B =10905.669889 C =11029.940728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.044 3.956 5 C 0.512 3.488 6 O -0.519 6.519 7 N -0.721 5.721 8 C 0.140 3.860 9 H 0.094 0.906 10 C -0.132 4.132 11 C -0.115 4.115 12 C -0.096 4.096 13 H 0.075 0.925 14 C 0.161 3.839 15 N -0.732 5.732 16 C -0.239 4.239 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.119 4.119 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.400 0.600 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.018 0.982 38 H 0.016 0.984 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.073 0.927 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.507 -21.149 5.012 26.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.036 4.036 5 C 0.296 3.704 6 O -0.393 6.393 7 N -0.374 5.374 8 C 0.036 3.964 9 H 0.112 0.888 10 C -0.171 4.171 11 C -0.153 4.153 12 C -0.115 4.115 13 H 0.093 0.907 14 C 0.033 3.967 15 N -0.376 5.376 16 C -0.370 4.370 17 H 0.087 0.913 18 C -0.211 4.211 19 N -0.582 5.582 20 Si 0.738 3.262 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.158 4.158 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.234 0.766 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.036 0.964 38 H 0.034 0.966 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.107 -20.387 4.981 25.858 hybrid contribution 1.388 -0.178 -0.400 1.455 sum -13.719 -20.564 4.581 25.141 Atomic orbital electron populations 1.21734 0.93362 1.02246 1.03541 1.22551 0.96047 0.83350 1.00176 1.88032 1.18491 1.26361 1.95421 1.22200 0.84032 0.94827 1.02529 1.20227 0.82890 0.90453 0.76787 1.90740 1.49331 1.51705 1.47543 1.45945 1.06694 1.08963 1.75779 1.22103 0.96475 0.80233 0.97579 0.88801 1.22736 1.00027 0.98319 0.95970 1.22128 0.96884 0.97013 0.99299 1.21874 0.96507 0.96025 0.97100 0.90703 1.20735 0.90625 0.89530 0.95792 1.42373 1.11539 1.06917 1.76819 1.19229 0.88352 0.95179 1.34260 0.91275 1.24748 0.98011 0.96021 1.02346 1.69662 1.34221 1.01268 1.53022 0.86191 0.84455 0.76959 0.78593 1.21771 1.21792 1.20817 1.22613 0.93888 0.98778 1.00515 0.91633 0.90960 0.91666 0.93164 0.93193 0.90279 0.90340 0.76621 0.91578 0.91613 0.91880 0.90293 0.96378 0.96580 0.78192 0.93536 0.90883 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.39 6.66 37.16 0.25 0.64 16 3 O -0.36 -4.03 9.88 -55.14 -0.54 -4.57 16 4 C 0.04 0.37 6.42 36.00 0.23 0.60 16 5 C 0.51 6.14 7.90 -10.99 -0.09 6.05 16 6 O -0.52 -8.81 16.23 -14.35 -0.23 -9.04 16 7 N -0.72 -7.19 5.21 -51.84 -0.27 -7.46 16 8 C 0.14 1.72 3.18 -65.90 -0.21 1.51 16 9 H 0.09 1.30 7.70 -51.93 -0.40 0.90 16 10 C -0.13 -1.79 6.51 -25.07 -0.16 -1.96 16 11 C -0.12 -1.82 6.16 -25.62 -0.16 -1.98 16 12 C -0.10 -1.51 2.97 -89.50 -0.27 -1.78 16 13 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.16 3.18 5.28 -4.04 -0.02 3.16 16 15 N -0.73 -18.57 5.36 -59.90 -0.32 -18.89 16 16 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 19 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 20 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C -0.12 -1.44 5.97 -25.03 -0.15 -1.59 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.40 2.69 8.53 -40.82 -0.35 2.34 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.43 7.60 -51.93 -0.39 1.03 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.38 10.27 7.53 -40.82 -0.31 9.96 16 40 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.07 0.80 7.73 -51.93 -0.40 0.40 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 346.63 15.07 5.22 5.22 Total: -1.00 -34.60 346.63 -8.20 -42.80 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -7.32 Total: 5.53 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -0.44 Total: -3.36 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.13 Total: -54.09 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.78 Total: -13.61 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.60 -8.20 -42.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755726838.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.818 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds