Wall clock time and date at job start Mon Mar 30 2020 01:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47499 * 2 1 4 4 C 1.42896 * 114.00378 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47124 * 180.02562 * 4 3 2 6 6 O 1.21273 * 120.00369 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99763 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00217 * 179.97438 * 7 5 4 9 9 H 1.09003 * 110.67458 * 36.77410 * 8 7 5 10 10 C 1.54891 * 110.75512 * 273.54367 * 8 7 5 11 11 C 1.54263 * 104.19869 * 203.74014 * 10 8 7 12 12 C 1.53873 * 106.59601 * 23.60807 * 11 10 8 13 13 H 1.09004 * 110.03752 * 240.66561 * 12 11 10 14 14 C 1.53005 * 110.03537 * 119.28547 * 12 11 10 15 15 N 1.46505 * 109.46904 * 67.09058 * 14 12 11 16 16 C 1.36931 * 119.99788 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 14 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48498 * 109.47174 * 90.00121 * 20 18 16 22 22 H 1.48501 * 109.47062 * 210.00072 * 20 18 16 23 23 H 1.48504 * 109.46913 * 329.99871 * 20 18 16 24 24 C 1.54269 * 106.64467 * 359.97438 * 12 11 10 25 25 H 1.08997 * 109.47197 * 59.99943 * 1 2 3 26 26 H 1.09001 * 109.47614 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47318 * 300.00134 * 1 2 3 28 28 H 1.08998 * 109.46714 * 239.99861 * 2 1 3 29 29 H 1.09000 * 109.46731 * 120.00235 * 2 1 3 30 30 H 1.08997 * 109.47125 * 59.99613 * 4 3 2 31 31 H 1.09004 * 109.46658 * 300.00033 * 4 3 2 32 32 H 0.97006 * 120.00005 * 359.97438 * 7 5 4 33 33 H 1.09004 * 110.48971 * 85.06152 * 10 8 7 34 34 H 1.09001 * 110.48552 * 322.42004 * 10 8 7 35 35 H 1.08997 * 110.03354 * 264.32662 * 11 10 8 36 36 H 1.08998 * 110.03470 * 142.88871 * 11 10 8 37 37 H 1.09003 * 109.46946 * 307.09817 * 14 12 11 38 38 H 1.08993 * 109.47679 * 187.09360 * 14 12 11 39 39 H 0.97000 * 119.99792 * 0.02562 * 15 14 12 40 40 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 41 41 H 1.09004 * 110.48443 * 95.08771 * 24 12 11 42 42 H 1.09000 * 110.48808 * 217.73994 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8195 2.9161 0.0001 6 8 2.9611 3.7728 0.0005 7 7 5.1210 3.2661 -0.0008 8 6 5.4988 4.6816 -0.0007 9 1 4.8093 5.2639 0.6105 10 6 5.5528 5.2354 -1.4462 11 6 6.5061 6.4446 -1.3528 12 6 7.3992 6.2062 -0.1227 13 1 7.2602 7.0093 0.6011 14 6 8.8673 6.1323 -0.5472 15 7 9.3023 7.4449 -1.0312 16 6 10.5878 7.6218 -1.4684 17 1 11.2810 6.7936 -1.4568 18 6 10.9983 8.8640 -1.9324 19 7 10.1535 9.8731 -1.9471 20 14 12.7499 9.1034 -2.5361 21 1 12.8158 8.8147 -3.9912 22 1 13.1708 10.5061 -2.2902 23 1 13.6554 8.1797 -1.8066 24 6 6.9578 4.8608 0.4897 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8333 0.9766 -0.8907 31 1 3.8340 0.9763 0.8892 32 1 5.8076 2.5809 -0.0015 33 1 4.5621 5.5548 -1.7697 34 1 5.9540 4.4850 -2.1275 35 1 5.9329 7.3630 -1.2256 36 1 7.1185 6.5077 -2.2522 37 1 8.9786 5.3963 -1.3435 38 1 9.4782 5.8392 0.3065 39 1 8.6796 8.1886 -1.0420 40 1 10.4405 10.7412 -2.2710 41 1 7.5861 4.0497 0.1215 42 1 6.9923 4.9075 1.5782 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755726838.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:16 Heat of formation + Delta-G solvation = -112.925345 kcal Electronic energy + Delta-G solvation = -20338.733474 eV Core-core repulsion = 17124.395594 eV Total energy + Delta-G solvation = -3214.337880 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.05359 -39.47311 -38.43948 -36.42328 -34.84118 -32.99730 -32.35574 -30.16182 -29.71101 -27.82791 -26.00471 -23.95818 -23.66737 -22.05126 -21.66036 -20.44820 -19.09404 -18.20752 -17.91717 -17.38038 -17.09664 -16.61485 -16.49819 -15.76143 -15.62935 -15.16218 -15.06919 -14.52204 -14.28188 -13.97896 -13.84997 -13.42854 -13.30243 -13.20309 -12.90645 -12.79284 -12.49407 -12.28612 -12.17030 -12.14705 -12.09634 -11.84802 -11.70885 -11.52244 -11.28214 -10.90550 -10.85156 -10.64485 -10.06602 -8.97244 -7.93746 -5.22202 1.47543 1.49601 1.57996 1.58279 1.83725 2.57140 3.04413 3.39725 3.55558 3.65108 3.79335 3.90331 4.17948 4.20044 4.22105 4.32737 4.37135 4.38623 4.46939 4.51366 4.52409 4.60477 4.69434 4.79912 4.84128 4.92735 5.01336 5.04062 5.14725 5.17587 5.25757 5.27665 5.41123 5.48604 5.53015 5.59063 6.13523 6.28712 6.60225 7.26857 7.34652 8.12916 8.34954 9.30012 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.063831 B = 0.002567 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.553234 B =10905.669889 C =11029.940728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 O -0.406 6.406 4 C 0.047 3.953 5 C 0.506 3.494 6 O -0.578 6.578 7 N -0.704 5.704 8 C 0.148 3.852 9 H 0.076 0.924 10 C -0.123 4.123 11 C -0.112 4.112 12 C -0.090 4.090 13 H 0.064 0.936 14 C 0.160 3.840 15 N -0.747 5.747 16 C -0.243 4.243 17 H 0.077 0.923 18 C -0.080 4.080 19 N -0.971 5.971 20 Si 0.975 3.025 21 H -0.287 1.287 22 H -0.297 1.297 23 H -0.268 1.268 24 C -0.104 4.104 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.420 0.580 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.024 0.976 38 H 0.023 0.977 39 H 0.373 0.627 40 H 0.250 0.750 41 H 0.094 0.906 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.602 -24.174 5.521 28.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.326 6.326 4 C -0.032 4.032 5 C 0.293 3.707 6 O -0.457 6.457 7 N -0.358 5.358 8 C 0.043 3.957 9 H 0.094 0.906 10 C -0.162 4.162 11 C -0.150 4.150 12 C -0.109 4.109 13 H 0.082 0.918 14 C 0.034 3.966 15 N -0.389 5.389 16 C -0.375 4.375 17 H 0.095 0.905 18 C -0.272 4.272 19 N -0.622 5.622 20 Si 0.804 3.196 21 H -0.215 1.215 22 H -0.223 1.223 23 H -0.192 1.192 24 C -0.142 4.142 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.258 0.742 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.205 0.795 40 H 0.059 0.941 41 H 0.113 0.887 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.166 -23.503 5.505 27.988 hybrid contribution 1.070 0.708 -0.551 1.396 sum -13.096 -22.795 4.953 26.752 Atomic orbital electron populations 1.21790 0.93566 1.03434 1.02306 1.22768 0.96024 0.81990 1.01833 1.87988 1.19976 1.28778 1.95810 1.22334 0.83342 0.92096 1.05444 1.21007 0.82586 0.91788 0.75270 1.90719 1.50977 1.53622 1.50361 1.45739 1.06930 1.08389 1.74698 1.21813 0.96317 0.81516 0.96086 0.90554 1.22639 0.98653 0.97560 0.97335 1.22027 0.96922 0.97833 0.98260 1.21775 0.94071 0.98238 0.96855 0.91764 1.20918 0.92943 0.87003 0.95767 1.42622 1.10674 1.08672 1.76954 1.19669 0.89543 0.95313 1.32990 0.90474 1.25609 1.02130 0.95984 1.03498 1.69829 1.36179 1.01529 1.54686 0.85117 0.79892 0.76599 0.78014 1.21466 1.22349 1.19232 1.22500 0.93523 0.96851 1.01311 0.92949 0.88544 0.92831 0.91518 0.91339 0.87312 0.87025 0.74211 0.92804 0.90497 0.92924 0.92840 0.95811 0.95923 0.79541 0.94099 0.88736 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.28 71.98 0.74 -1.07 16 2 C 0.05 0.59 6.66 71.98 0.48 1.07 16 3 O -0.41 -8.35 9.88 -129.94 -1.28 -9.63 16 4 C 0.05 0.65 6.42 71.24 0.46 1.11 16 5 C 0.51 11.32 7.90 87.66 0.69 12.01 16 6 O -0.58 -19.75 16.23 16.03 0.26 -19.49 16 7 N -0.70 -12.20 5.21 -436.32 -2.27 -14.47 16 8 C 0.15 3.40 3.18 46.31 0.15 3.54 16 9 H 0.08 2.09 7.70 -2.39 -0.02 2.07 16 10 C -0.12 -3.28 6.51 31.67 0.21 -3.07 16 11 C -0.11 -3.60 6.16 31.32 0.19 -3.41 16 12 C -0.09 -2.78 2.97 -10.07 -0.03 -2.81 16 13 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 14 C 0.16 6.16 5.28 86.38 0.46 6.61 16 15 N -0.75 -38.12 5.36 -343.44 -1.84 -39.96 16 16 C -0.24 -13.65 9.99 84.04 0.84 -12.81 16 17 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 18 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 19 N -0.97 -60.40 13.06 21.65 0.28 -60.11 16 20 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 21 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 22 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 C -0.10 -2.22 5.97 31.70 0.19 -2.03 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.42 3.94 8.53 -92.70 -0.79 3.15 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 1.98 7.60 -2.39 -0.02 1.96 16 37 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.37 20.46 7.53 -92.71 -0.70 19.77 16 40 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 41 H 0.09 1.67 7.73 -2.39 -0.02 1.66 16 42 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -76.96 346.63 1.52 -75.44 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: -0.49 Total: 24.85 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 4.84 Total: -5.05 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -3.83 Total: -114.54 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -1.02 Total: -29.12 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -76.96 1.52 -75.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755726838.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.483 kcal (2) G-P(sol) polarization free energy of solvation -76.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds