Wall clock time and date at job start Mon Mar 30 2020 01:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00228 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00068 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46685 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46910 * 120.00333 * 9 7 5 12 12 H 1.48502 * 109.47120 * 240.00671 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47039 * 180.02562 * 15 14 13 17 17 N 1.46902 * 109.47247 * 180.02562 * 16 15 14 18 18 C 1.47013 * 110.99631 * 293.63045 * 17 16 15 19 19 C 1.53105 * 109.25954 * 177.60556 * 18 17 16 20 20 O 1.43019 * 109.25357 * 56.84990 * 19 18 17 21 21 C 1.43015 * 113.73941 * 301.33024 * 20 19 18 22 22 C 1.47012 * 111.00273 * 169.99833 * 17 16 15 23 23 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 24 24 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 25 25 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 28 28 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 29 29 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 30 30 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 31 31 H 0.97002 * 120.00555 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 33 33 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 34 34 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 35 35 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 36 36 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 37 37 H 1.09001 * 109.47393 * 299.99719 * 16 15 14 38 38 H 1.08998 * 109.47408 * 60.00073 * 16 15 14 39 39 H 1.08992 * 109.51073 * 297.54209 * 18 17 16 40 40 H 1.09010 * 109.50600 * 57.67590 * 18 17 16 41 41 H 1.09000 * 109.50579 * 296.91973 * 19 18 17 42 42 H 1.08990 * 109.54116 * 176.80861 * 19 18 17 43 43 H 1.08999 * 109.50691 * 298.73861 * 21 20 19 44 44 H 1.09005 * 109.54050 * 178.62857 * 21 20 19 45 45 H 1.08995 * 109.50914 * 302.32826 * 22 17 16 46 46 H 1.09004 * 109.50512 * 62.41198 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 2.6274 -1.5511 -3.8525 9 14 1.2491 0.3991 -5.2572 10 1 0.4245 1.5661 -4.8530 11 1 2.4045 0.8658 -6.0650 12 1 0.4243 -0.5341 -6.0660 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 6 1.4922 0.0535 4.8955 17 7 1.9641 -0.6119 6.1172 18 6 1.3719 -1.9509 6.2502 19 6 1.9350 -2.6302 7.5014 20 8 1.6752 -1.8075 8.6421 21 6 2.2381 -0.4963 8.5465 22 6 1.6781 0.2045 7.3059 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9562 -0.8901 28 1 1.6767 1.9563 0.8899 29 1 3.1300 -0.7218 -1.2489 30 1 1.6767 -1.7491 -1.2491 31 1 2.8618 -1.8826 -4.7335 32 1 3.1300 -0.7209 1.2495 33 1 1.6766 -1.7489 1.2494 34 1 1.8198 0.9437 2.4401 35 1 1.6586 -1.7220 3.6874 36 1 3.1116 -0.6939 3.6870 37 1 1.8550 1.0812 4.8787 38 1 0.4023 0.0526 4.8788 39 1 0.2893 -1.8628 6.3399 40 1 1.6177 -2.5465 5.3709 41 1 3.0105 -2.7667 7.3886 42 1 1.4570 -3.6004 7.6359 43 1 3.3224 -0.5708 8.4641 44 1 1.9793 0.0774 9.4366 45 1 2.1473 1.1824 7.1973 46 1 0.6003 0.3278 7.4121 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135123470.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:48 Heat of formation + Delta-G solvation = -56.008768 kcal Electronic energy + Delta-G solvation = -21167.269320 eV Core-core repulsion = 18091.232622 eV Total energy + Delta-G solvation = -3076.036697 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.84178 -37.78776 -36.33453 -34.09439 -32.20053 -31.48891 -29.47302 -27.03830 -26.35227 -26.23220 -24.55084 -24.25860 -22.34134 -21.56540 -20.60605 -17.87231 -16.84498 -16.43815 -16.25424 -15.85958 -15.46709 -15.33938 -14.76095 -14.60264 -14.40059 -13.93958 -13.54212 -13.36726 -12.82969 -12.49397 -12.45339 -12.18860 -11.97585 -11.96385 -11.67900 -11.50147 -11.06069 -10.97343 -10.88937 -10.75856 -10.69229 -10.48677 -10.25885 -10.11550 -9.95735 -9.68162 -9.01916 -8.81959 -8.66579 -8.31728 -8.10643 -5.96012 -3.96067 3.32481 3.38524 3.40391 3.43874 3.59056 4.45858 4.52011 4.63106 4.68778 4.72967 4.84897 4.98481 5.07419 5.20375 5.23568 5.32806 5.39874 5.46778 5.50789 5.58175 5.64067 5.67394 5.74973 5.87498 5.94354 5.99577 6.26012 6.33049 6.51076 6.64902 6.66439 6.69230 6.79492 6.82890 6.83068 7.21070 7.22182 7.26296 7.39534 7.65945 7.71615 7.86068 8.04452 8.48836 9.09588 9.66778 11.15721 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.051503 B = 0.002774 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.530420 B =10092.698070 C =10325.653851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.129 4.129 4 C 0.033 3.967 5 C -0.506 4.506 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.072 3.928 14 N -0.688 5.688 15 C 0.061 3.939 16 C 0.058 3.942 17 N -0.538 5.538 18 C 0.014 3.986 19 C 0.063 3.937 20 O -0.388 6.388 21 C 0.064 3.936 22 C 0.018 3.982 23 H 0.041 0.959 24 H 0.054 0.946 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.013 0.987 30 H 0.015 0.985 31 H 0.258 0.742 32 H 0.024 0.976 33 H 0.065 0.935 34 H 0.338 0.662 35 H 0.068 0.932 36 H 0.034 0.966 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.059 0.941 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.990 2.041 22.543 22.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.057 4.057 14 N -0.320 5.320 15 C -0.068 4.068 16 C -0.070 4.070 17 N -0.264 5.264 18 C -0.114 4.114 19 C -0.014 4.014 20 O -0.306 6.306 21 C -0.013 4.013 22 C -0.110 4.110 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.031 0.969 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.156 0.844 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.115 0.885 45 H 0.104 0.896 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.114 1.487 22.540 22.616 hybrid contribution -0.011 0.816 -1.230 1.476 sum -1.125 2.303 21.309 21.463 Atomic orbital electron populations 1.21597 0.95032 1.00535 1.00131 1.20632 0.95837 0.95021 0.94402 1.21768 0.99704 0.96745 1.00399 1.19130 0.95911 0.95207 0.90197 1.21276 1.30639 1.11892 0.90595 0.92237 1.25024 0.95421 0.95137 0.99076 1.69976 1.37368 1.23247 1.23179 0.86609 0.78591 0.79742 0.83499 1.19778 1.21193 1.21152 1.22095 0.96382 0.98033 0.89150 1.60532 1.63772 1.06439 1.01256 1.21867 0.97581 0.98386 0.89004 1.22070 0.98471 0.97889 0.88521 1.62156 1.59049 1.02853 1.02293 1.22857 0.97633 0.91185 0.99714 1.22689 1.00534 0.93698 0.84445 1.87976 1.77205 1.24627 1.40836 1.22658 0.97853 0.83601 0.97199 1.22771 0.99745 0.97641 0.90871 0.93965 0.92679 0.94222 0.94090 0.91700 0.94838 0.96902 0.96690 0.93221 0.95792 0.91642 0.84369 0.91343 0.94779 0.90851 0.93688 0.93778 0.89111 0.92215 0.88412 0.92255 0.88523 0.89618 0.93903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 2 C -0.06 -1.16 0.60 -154.51 -0.09 -1.26 16 3 C -0.13 -2.38 7.89 37.16 0.29 -2.09 16 4 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -13.85 7.65 -34.44 -0.26 -14.11 16 6 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 13 C 0.07 1.25 4.65 -3.82 -0.02 1.23 16 14 N -0.69 -9.87 5.71 -113.78 -0.65 -10.52 16 15 C 0.06 0.76 5.62 -3.82 -0.02 0.74 16 16 C 0.06 0.62 5.22 -3.83 -0.02 0.60 16 17 N -0.54 -5.41 4.73 -234.31 -1.11 -6.52 16 18 C 0.01 0.14 5.44 -3.71 -0.02 0.12 16 19 C 0.06 0.55 7.01 37.21 0.26 0.81 16 20 O -0.39 -3.96 10.83 -35.23 -0.38 -4.34 16 21 C 0.06 0.52 7.01 37.21 0.26 0.78 16 22 C 0.02 0.16 5.64 -3.71 -0.02 0.13 16 23 H 0.04 0.73 7.60 -51.93 -0.39 0.34 16 24 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 28 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.34 4.62 6.77 -39.29 -0.27 4.35 16 35 H 0.07 0.86 6.52 -51.93 -0.34 0.52 16 36 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.74 8.04 -51.93 -0.42 0.32 16 38 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 39 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.85 6.39 -51.92 -0.33 0.52 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.09 0.64 8.09 -51.93 -0.42 0.22 16 46 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 350.86 15.07 5.29 5.29 Total: -1.00 -29.92 350.86 -9.24 -39.16 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -8.55 Total: -0.64 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 0.45 Total: -12.84 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: -1.02 Total: -43.22 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.38 Total: -4.34 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.92 -9.24 -39.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135123470.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.854 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds