Wall clock time and date at job start Mon Mar 30 2020 00:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 113.99921 * 2 1 4 4 H 1.08998 * 109.49624 * 330.06912 * 3 2 1 5 5 C 1.53041 * 109.50053 * 210.00244 * 3 2 1 6 6 C 1.53037 * 109.53731 * 178.65139 * 5 3 2 7 7 C 1.53189 * 109.31573 * 61.36447 * 6 5 3 8 8 N 1.46928 * 108.77737 * 305.36599 * 7 6 5 9 9 C 1.34772 * 120.62909 * 233.58604 * 8 7 6 10 10 O 1.21592 * 119.99737 * 185.02176 * 9 8 7 11 11 N 1.34778 * 120.00172 * 4.74646 * 9 8 7 12 12 C 1.46500 * 119.99704 * 175.20527 * 11 9 8 13 13 C 1.53004 * 109.46947 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47455 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47248 * 180.02562 * 14 13 12 16 16 H 1.07992 * 119.99990 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99523 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00706 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99640 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46904 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47282 * 119.99543 * 19 17 15 22 22 H 1.48497 * 109.46828 * 239.99653 * 19 17 15 23 23 C 1.46925 * 118.73551 * 53.85727 * 8 7 6 24 24 H 1.09003 * 109.47210 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47341 * 299.99628 * 1 2 3 26 26 H 1.09000 * 109.47462 * 59.99871 * 1 2 3 27 27 H 1.09000 * 109.45931 * 58.62792 * 5 3 2 28 28 H 1.08998 * 109.45761 * 298.67320 * 5 3 2 29 29 H 1.09002 * 109.49618 * 301.41161 * 6 5 3 30 30 H 1.09001 * 109.49421 * 181.31537 * 6 5 3 31 31 H 1.08996 * 109.58877 * 185.57396 * 7 6 5 32 32 H 1.08999 * 109.58460 * 65.15289 * 7 6 5 33 33 H 0.96998 * 120.00023 * 355.20165 * 11 9 8 34 34 H 1.08998 * 109.46880 * 299.99419 * 12 11 9 35 35 H 1.08994 * 109.47458 * 59.99642 * 12 11 9 36 36 H 1.09004 * 109.46582 * 300.00079 * 13 12 11 37 37 H 1.09002 * 109.46838 * 59.99522 * 13 12 11 38 38 H 1.09003 * 109.46911 * 299.99944 * 14 13 12 39 39 H 1.09001 * 109.46928 * 59.99720 * 14 13 12 40 40 H 0.96999 * 120.00244 * 180.02562 * 18 17 15 41 41 H 1.08996 * 109.58873 * 65.93199 * 23 8 7 42 42 H 1.09007 * 109.58544 * 186.35961 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3447 2.0000 -0.5127 5 6 3.3593 1.2641 -0.7214 6 6 3.9669 2.6683 -0.7513 7 6 4.2007 3.1500 0.6840 8 7 2.9364 3.0554 1.4264 9 6 2.4418 4.1256 2.0794 10 8 1.4439 4.0118 2.7648 11 7 3.0564 5.3207 1.9771 12 6 2.4617 6.5058 2.6000 13 6 3.3520 7.7218 2.3358 14 6 2.7308 8.9597 2.9858 15 6 3.6074 10.1575 2.7250 16 1 4.5164 10.0469 2.1525 17 6 3.2487 11.3944 3.2172 18 7 2.1415 11.5292 3.9139 19 14 4.3349 12.8793 2.8934 20 1 5.5136 12.4647 2.0907 21 1 3.5625 13.9042 2.1463 22 1 4.7925 13.4492 4.1860 23 6 2.2247 1.7702 1.4485 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.2147 0.9091 -1.7417 28 1 4.0324 0.5882 -0.1939 29 1 3.2830 3.3500 -1.2570 30 1 4.9167 2.6424 -1.2856 31 1 4.5403 4.1856 0.6711 32 1 4.9530 2.5226 1.1619 33 1 3.8925 5.3961 1.4911 34 1 1.4728 6.6812 2.1766 35 1 2.3738 6.3461 3.6746 36 1 4.3412 7.5466 2.7588 37 1 3.4395 7.8813 1.2611 38 1 1.7417 9.1347 2.5623 39 1 2.6429 8.8004 4.0605 40 1 1.8890 12.3995 4.2599 41 1 2.8190 1.0325 1.9876 42 1 1.2599 1.8952 1.9402 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171448391.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:57 Heat of formation + Delta-G solvation = -87.877465 kcal Electronic energy + Delta-G solvation = -20803.427508 eV Core-core repulsion = 17590.175786 eV Total energy + Delta-G solvation = -3213.251722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.50390 -38.68098 -36.65017 -35.42703 -33.39775 -32.69914 -31.29691 -30.32885 -27.12837 -26.60301 -25.31029 -23.28250 -22.84808 -21.20378 -20.62264 -19.45132 -18.17942 -16.69509 -16.59243 -16.12667 -15.88508 -15.43870 -15.32716 -14.62610 -14.42991 -14.29245 -14.04666 -13.88083 -13.26956 -13.24581 -13.02118 -12.33015 -12.17505 -11.81973 -11.71528 -11.62254 -11.37682 -11.31135 -10.92918 -10.87185 -10.70099 -10.57042 -10.11016 -10.02408 -9.86856 -9.44876 -9.11460 -8.95073 -8.48843 -8.37878 -6.02224 -4.05320 2.57785 3.27418 3.29491 3.36990 3.40306 3.45283 3.97372 4.43846 4.45700 4.49799 4.60099 4.69170 4.86975 5.04785 5.09504 5.14265 5.25260 5.33648 5.38669 5.43158 5.50071 5.53628 5.60087 5.71372 5.79191 5.80944 5.88069 6.17913 6.27427 6.52534 6.61796 6.77805 6.88057 7.00034 7.01968 7.63791 7.76372 7.96773 8.04232 8.37630 8.69977 9.01651 9.58940 11.09118 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.038434 B = 0.002944 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.351650 B = 9507.763939 C = 9941.150392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.383 6.383 3 C 0.075 3.925 4 H 0.066 0.934 5 C -0.115 4.115 6 C -0.133 4.133 7 C 0.108 3.892 8 N -0.631 5.631 9 C 0.705 3.295 10 O -0.591 6.591 11 N -0.741 5.741 12 C 0.133 3.867 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.111 3.889 24 H 0.086 0.914 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.393 0.607 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.019 0.981 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.071 0.929 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.688 -22.241 -10.442 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.301 6.301 3 C 0.016 3.984 4 H 0.084 0.916 5 C -0.153 4.153 6 C -0.171 4.171 7 C -0.015 4.015 8 N -0.371 5.371 9 C 0.406 3.594 10 O -0.469 6.469 11 N -0.397 5.397 12 C 0.010 3.990 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.013 4.013 24 H 0.105 0.895 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.229 0.771 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.925 -22.330 -9.838 24.477 hybrid contribution 0.737 1.164 -0.378 1.429 sum 2.662 -21.165 -10.216 23.652 Atomic orbital electron populations 1.22840 0.80744 1.02791 1.00420 1.87884 1.19970 1.27217 1.95000 1.22602 0.95381 0.84710 0.95751 0.91637 1.21570 0.95301 0.97303 1.01088 1.21923 1.02003 0.96491 0.96715 1.21681 0.85945 1.02062 0.91814 1.47183 1.24668 1.10327 1.54964 1.15906 0.83016 0.80340 0.80142 1.90907 1.27675 1.84160 1.44141 1.45567 1.27481 1.07387 1.59302 1.21532 0.97231 0.82583 0.97623 1.21889 0.98349 0.94615 1.00941 1.19032 0.96233 0.90105 0.96024 1.21237 1.07856 0.93023 1.33861 0.92602 1.25032 0.95230 0.99056 0.95180 1.69973 1.23229 1.23994 1.36066 0.86531 0.80593 0.82844 0.77982 1.19768 1.21005 1.20998 1.21917 0.98919 0.83827 0.96594 0.89511 0.93598 0.93951 0.90954 0.90793 0.91084 0.89811 0.89927 0.91044 0.77087 0.92034 0.91832 0.92764 0.92812 0.96254 0.96210 0.92974 0.91051 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 101.05 1.09 1.32 16 2 O -0.38 -3.82 10.35 -35.23 -0.36 -4.19 16 3 C 0.07 0.71 2.77 -26.38 -0.07 0.64 16 4 H 0.07 0.66 7.79 -51.93 -0.40 0.25 16 5 C -0.11 -0.87 5.53 -26.69 -0.15 -1.02 16 6 C -0.13 -0.92 6.08 -26.61 -0.16 -1.08 16 7 C 0.11 0.91 6.43 -3.71 -0.02 0.88 16 8 N -0.63 -7.60 2.97 -178.23 -0.53 -8.13 16 9 C 0.70 11.28 8.30 -86.92 -0.72 10.56 16 10 O -0.59 -11.89 15.78 5.28 0.08 -11.80 16 11 N -0.74 -11.12 5.47 -65.23 -0.36 -11.48 16 12 C 0.13 2.41 5.68 -4.04 -0.02 2.38 16 13 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 19 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.11 1.25 6.07 -3.48 -0.02 1.23 16 24 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.37 8.05 -51.93 -0.42 -0.05 16 26 H 0.04 0.30 8.09 -51.93 -0.42 -0.12 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.63 5.57 -51.93 -0.29 0.35 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.39 4.76 5.93 -40.82 -0.24 4.52 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 1.24 6.94 -51.93 -0.36 0.88 16 LS Contribution 339.47 15.07 5.12 5.12 Total: -1.00 -33.28 339.47 -8.28 -41.55 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -7.17 Total: -0.94 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -0.77 Total: -0.44 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.15 Total: -45.70 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.28 Total: -15.99 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.28 -8.28 -41.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171448391.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.327 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds