Wall clock time and date at job start Mon Mar 30 2020 00:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.53000 * 109.47149 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46975 * 175.00021 * 4 3 2 6 6 N 1.46499 * 109.46915 * 294.99777 * 4 3 2 7 7 C 1.34774 * 120.00004 * 204.99729 * 6 4 3 8 8 O 1.21592 * 120.00179 * 0.02562 * 7 6 4 9 9 N 1.34778 * 120.00163 * 180.02562 * 7 6 4 10 10 C 1.46502 * 120.00038 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47314 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47321 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47323 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99869 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00550 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99565 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00489 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46757 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46844 * 120.00132 * 17 15 13 20 20 H 1.48494 * 109.47394 * 240.00436 * 17 15 13 21 21 C 1.52997 * 109.46967 * 54.99762 * 4 3 2 22 22 C 1.53004 * 117.49761 * 248.74427 * 21 4 3 23 23 C 1.53009 * 117.49769 * 180.08723 * 21 4 3 24 24 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 25 25 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 27 27 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 28 28 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 29 29 H 0.97000 * 120.00205 * 25.00147 * 6 4 3 30 30 H 0.97000 * 120.00046 * 0.02562 * 9 7 6 31 31 H 1.09002 * 109.47248 * 299.99859 * 10 9 7 32 32 H 1.08998 * 109.47450 * 59.99753 * 10 9 7 33 33 H 1.09002 * 109.46704 * 300.00015 * 11 10 9 34 34 H 1.09004 * 109.46870 * 59.99718 * 11 10 9 35 35 H 1.08996 * 109.47858 * 300.00342 * 12 11 10 36 36 H 1.09004 * 109.47184 * 60.00149 * 12 11 10 37 37 H 0.96992 * 119.99716 * 179.97438 * 16 15 13 38 38 H 1.08995 * 115.55085 * 34.42091 * 21 4 3 39 39 H 1.08997 * 117.50138 * 0.02562 * 22 21 4 40 40 H 1.09003 * 117.49357 * 145.02559 * 22 21 4 41 41 H 1.08998 * 117.49857 * 214.98122 * 23 21 4 42 42 H 1.08997 * 117.49661 * 359.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9785 2.1765 -0.0889 6 7 3.9756 0.5645 1.2528 7 6 5.2194 0.7946 1.7179 8 8 5.9761 1.5173 1.0986 9 7 5.6246 0.2236 2.8696 10 6 6.9765 0.4742 3.3755 11 6 7.1795 -0.2871 4.6870 12 6 8.5915 -0.0259 5.2150 13 6 8.7913 -0.7753 6.5071 14 1 7.9913 -1.3780 6.9111 15 6 9.9958 -0.6924 7.1731 16 7 10.9702 0.0411 6.6809 17 14 10.2437 -1.6219 8.7743 18 1 9.0045 -2.3682 9.1104 19 1 11.3705 -2.5771 8.6228 20 1 10.5531 -0.6599 9.8624 21 6 3.9790 0.3193 -1.1806 22 6 4.5715 -1.0558 -0.8658 23 6 5.4796 0.0758 -1.3538 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8901 27 1 1.6887 1.8463 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 3.3719 -0.0119 1.7470 30 1 5.0211 -0.3532 3.3635 31 1 7.7077 0.1348 2.6419 32 1 7.1066 1.5421 3.5510 33 1 6.4483 0.0519 5.4208 34 1 7.0495 -1.3550 4.5111 35 1 9.3225 -0.3651 4.4811 36 1 8.7219 1.0419 5.3909 37 1 11.8173 0.0997 7.1496 38 1 3.3768 0.4130 -2.0842 39 1 4.6449 -1.3441 0.1828 40 1 4.3593 -1.8666 -1.5627 41 1 5.8645 0.0089 -2.3714 42 1 6.1508 0.5324 -0.6264 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178662246.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:54 Heat of formation + Delta-G solvation = -84.478170 kcal Electronic energy + Delta-G solvation = -20726.861710 eV Core-core repulsion = 17513.757393 eV Total energy + Delta-G solvation = -3213.104317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.43448 -39.23078 -37.85091 -36.78974 -35.20081 -34.86741 -32.95491 -30.80979 -28.37865 -27.12396 -25.04655 -24.32693 -23.17690 -22.29034 -22.14278 -20.85523 -19.28254 -18.52155 -17.79430 -17.49552 -16.86360 -16.58636 -16.37308 -16.36247 -15.78863 -15.36537 -15.22086 -14.98235 -14.26798 -14.19901 -13.72195 -13.45049 -13.35047 -12.97682 -12.77234 -12.70281 -12.53522 -12.40089 -12.31831 -12.07419 -11.65830 -11.61351 -11.32349 -11.18281 -11.02348 -10.82010 -10.55424 -10.55215 -10.20084 -9.76017 -8.18981 -6.30362 1.42113 1.42368 1.55612 1.72065 2.17449 2.42528 2.86184 2.98260 3.14848 3.35986 3.71190 3.96605 4.16710 4.18830 4.25278 4.25538 4.42648 4.52421 4.57654 4.58348 4.64967 4.69036 4.74476 4.85964 4.97064 4.97644 5.01809 5.07903 5.18021 5.27090 5.39206 5.51012 5.58855 5.61011 5.72349 5.85359 6.04097 6.23731 6.27030 6.87259 7.14478 7.39224 7.63658 8.93488 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.031922 B = 0.002976 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.937855 B = 9405.692424 C = 9819.301622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.064 3.936 4 C 0.192 3.808 5 H 0.091 0.909 6 N -0.723 5.723 7 C 0.699 3.301 8 O -0.627 6.627 9 N -0.732 5.732 10 C 0.152 3.848 11 C -0.100 4.100 12 C 0.024 3.976 13 C -0.539 4.539 14 H 0.066 0.934 15 C -0.004 4.004 16 N -0.936 5.936 17 Si 0.968 3.032 18 H -0.258 1.258 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.145 4.145 22 C -0.163 4.163 23 C -0.209 4.209 24 H 0.048 0.952 25 H 0.091 0.909 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.411 0.589 30 H 0.410 0.590 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.066 0.934 35 H -0.009 1.009 36 H -0.008 1.008 37 H 0.263 0.737 38 H 0.124 0.876 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.001 -0.426 -14.648 28.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.013 4.013 4 C 0.087 3.913 5 H 0.109 0.891 6 N -0.379 5.379 7 C 0.399 3.601 8 O -0.509 6.509 9 N -0.388 5.388 10 C 0.027 3.973 11 C -0.138 4.138 12 C -0.014 4.014 13 C -0.577 4.577 14 H 0.084 0.916 15 C -0.202 4.202 16 N -0.576 5.576 17 Si 0.792 3.208 18 H -0.182 1.182 19 H -0.206 1.206 20 H -0.205 1.205 21 C -0.165 4.165 22 C -0.200 4.200 23 C -0.246 4.246 24 H 0.066 0.934 25 H 0.110 0.890 26 H 0.069 0.931 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.247 0.753 30 H 0.246 0.754 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.010 0.990 36 H 0.011 0.989 37 H 0.072 0.928 38 H 0.141 0.859 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.055 0.119 -15.170 27.598 hybrid contribution 0.186 -0.495 1.132 1.250 sum -22.869 -0.376 -14.038 26.836 Atomic orbital electron populations 1.22889 0.79716 1.03561 1.00794 1.87917 1.20972 1.27470 1.95583 1.22776 0.90376 0.85593 1.02592 1.20506 0.93093 0.96303 0.81410 0.89132 1.44984 1.13001 1.53860 1.26080 1.16139 0.82663 0.80311 0.80981 1.90842 1.55506 1.44024 1.60511 1.45058 1.16425 1.52999 1.24299 1.21037 0.81901 0.99239 0.95100 1.21581 0.98283 0.99659 0.94284 1.18938 0.92161 0.95360 0.94923 1.21714 0.99141 1.29126 1.07766 0.91558 1.26036 0.95845 0.96462 1.01840 1.70123 1.04870 1.41463 1.41161 0.85357 0.78505 0.78277 0.78642 1.18173 1.20604 1.20541 1.22648 0.95214 0.98549 1.00054 1.22789 1.03776 0.91827 1.01587 1.23310 0.94319 1.04392 1.02568 0.93360 0.89020 0.93095 0.89765 0.91531 0.75288 0.75441 0.93710 0.93467 0.91394 0.91555 0.99012 0.98918 0.92815 0.85856 0.90015 0.88435 0.88922 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.40 -5.55 9.92 -148.98 -1.48 -7.03 16 3 C 0.06 0.79 5.66 71.98 0.41 1.20 16 4 C 0.19 3.67 2.84 44.99 0.13 3.80 16 5 H 0.09 2.03 7.58 -2.39 -0.02 2.01 16 6 N -0.72 -15.33 3.60 -457.81 -1.65 -16.98 16 7 C 0.70 20.80 7.40 179.05 1.33 22.13 16 8 O -0.63 -23.98 13.37 -4.00 -0.05 -24.04 16 9 N -0.73 -20.88 5.56 -478.53 -2.66 -23.55 16 10 C 0.15 5.53 5.67 86.38 0.49 6.02 16 11 C -0.10 -3.92 5.27 30.59 0.16 -3.76 16 12 C 0.02 1.26 4.97 29.85 0.15 1.41 16 13 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 14 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 15 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 16 N -0.94 -57.65 13.29 21.45 0.28 -57.37 16 17 Si 0.97 44.09 29.54 68.60 2.03 46.11 16 18 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 21 C -0.15 -2.92 5.23 -10.79 -0.06 -2.97 16 22 C -0.16 -3.64 9.74 30.62 0.30 -3.34 16 23 C -0.21 -5.38 9.83 30.62 0.30 -5.08 16 24 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.05 0.32 8.14 -2.38 -0.02 0.31 16 27 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.41 6.91 8.40 -92.71 -0.78 6.13 16 30 H 0.41 9.00 8.49 -92.71 -0.79 8.21 16 31 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 36 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 38 H 0.12 2.01 8.11 -2.39 -0.02 1.99 16 39 H 0.08 2.00 6.67 -2.39 -0.02 1.98 16 40 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.09 2.97 5.01 -2.39 -0.01 2.96 16 Total: -1.00 -71.42 344.94 1.06 -70.36 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -0.56 Total: 21.54 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 5.15 Total: -9.05 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -4.02 Total: -97.90 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -1.53 Total: -31.06 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -71.42 1.06 -70.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178662246.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.118 kcal (2) G-P(sol) polarization free energy of solvation -71.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds