Wall clock time and date at job start Mon Mar 30 2020 01:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47269 * 2 1 4 4 O 1.42903 * 109.46459 * 119.99893 * 2 1 3 5 5 C 1.53001 * 109.47376 * 239.99703 * 2 1 3 6 6 N 1.46898 * 109.46893 * 180.02562 * 5 2 1 7 7 C 1.46964 * 110.99692 * 293.79556 * 6 5 2 8 8 C 1.53049 * 109.36150 * 176.81529 * 7 6 5 9 9 N 1.46958 * 109.36629 * 58.40495 * 8 7 6 10 10 C 1.46893 * 111.00167 * 176.81123 * 9 8 7 11 11 C 1.53002 * 109.47054 * 313.79791 * 10 9 8 12 12 C 1.53008 * 109.47214 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47014 * 180.02562 * 12 11 10 14 14 H 1.08007 * 120.00184 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99895 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99944 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00038 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47306 * 60.00158 * 17 15 13 19 19 H 1.48499 * 109.47163 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47395 * 300.00044 * 17 15 13 21 21 C 1.46964 * 110.87960 * 300.67915 * 9 8 7 22 22 H 1.09001 * 109.48434 * 299.35478 * 21 9 8 23 23 C 1.52994 * 109.48783 * 179.28698 * 21 9 8 24 24 C 1.46961 * 110.99662 * 170.00448 * 6 5 2 25 25 H 1.08997 * 109.47258 * 300.00172 * 1 2 3 26 26 H 1.08997 * 109.46943 * 60.00345 * 1 2 3 27 27 H 1.08999 * 109.47269 * 180.02562 * 1 2 3 28 28 H 0.96700 * 114.00311 * 60.00313 * 4 2 1 29 29 H 1.08999 * 109.47164 * 300.00361 * 5 2 1 30 30 H 1.08997 * 109.47124 * 60.00063 * 5 2 1 31 31 H 1.09000 * 109.48797 * 296.78639 * 7 6 5 32 32 H 1.09000 * 109.48428 * 56.85165 * 7 6 5 33 33 H 1.08999 * 109.48690 * 298.43658 * 8 7 6 34 34 H 1.09002 * 109.48890 * 178.37171 * 8 7 6 35 35 H 1.08998 * 109.47517 * 73.79701 * 10 9 8 36 36 H 1.09005 * 109.47250 * 193.79770 * 10 9 8 37 37 H 1.09003 * 109.47344 * 299.99725 * 11 10 9 38 38 H 1.08997 * 109.47246 * 60.00187 * 11 10 9 39 39 H 1.09003 * 109.46712 * 300.00077 * 12 11 10 40 40 H 1.08997 * 109.46889 * 59.99934 * 12 11 10 41 41 H 0.97001 * 119.99812 * 179.97438 * 16 15 13 42 42 H 1.08995 * 109.47047 * 300.10905 * 23 21 9 43 43 H 1.09002 * 109.47084 * 60.10938 * 23 21 9 44 44 H 1.09006 * 109.46951 * 180.10346 * 23 21 9 45 45 H 1.09002 * 109.48490 * 303.14649 * 24 6 5 46 46 H 1.08998 * 109.48899 * 63.21620 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6737 1.1669 5 6 2.0401 -0.7213 -1.2492 6 7 3.5091 -0.7218 -1.2488 7 6 4.0362 0.6421 -1.3968 8 6 5.5639 0.6076 -1.3120 9 7 6.0906 -0.2743 -2.3629 10 6 7.5595 -0.2748 -2.3626 11 6 8.0699 1.1644 -2.2668 12 6 9.6000 1.1640 -2.2671 13 6 10.1027 2.5815 -2.1720 14 1 9.4011 3.4008 -2.1174 15 6 11.4583 2.8325 -2.1560 16 7 12.3126 1.8349 -2.2231 17 14 12.0814 4.5896 -2.0389 18 1 11.5873 5.2074 -0.7822 19 1 13.5664 4.5892 -2.0391 20 1 11.5860 5.3691 -3.2018 21 6 5.5634 -1.6382 -2.2150 22 1 5.8650 -2.0416 -1.2484 23 6 6.1169 -2.5234 -3.3334 24 6 4.0357 -1.6037 -2.2998 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.7209 -1.5952 1.2330 29 1 1.6767 -1.7490 -1.2492 30 1 1.6768 -0.2075 -2.1392 31 1 3.7345 1.0456 -2.3634 32 1 3.6418 1.2727 -0.6000 33 1 5.8654 0.2296 -0.3351 34 1 5.9586 1.6142 -1.4504 35 1 7.9225 -0.8466 -1.5086 36 1 7.9229 -0.7286 -3.2847 37 1 7.7070 1.7363 -3.1208 38 1 7.7066 1.6182 -1.3447 39 1 9.9633 0.5920 -1.4133 40 1 9.9630 0.7104 -3.1893 41 1 13.2663 2.0116 -2.2121 42 1 5.8159 -2.1187 -4.2996 43 1 7.2050 -2.5477 -3.2727 44 1 5.7243 -3.5344 -3.2245 45 1 3.6410 -2.6103 -2.1613 46 1 3.7341 -1.2256 -3.2766 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189572827.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:17 Heat of formation + Delta-G solvation = -79.452482 kcal Electronic energy + Delta-G solvation = -21547.382934 eV Core-core repulsion = 18470.329641 eV Total energy + Delta-G solvation = -3077.053293 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76321 -38.74565 -36.79952 -35.47331 -33.96216 -32.78698 -31.96898 -29.60054 -27.96172 -27.43307 -25.37079 -24.15653 -23.35772 -21.81808 -21.55550 -20.57912 -18.50611 -17.54265 -17.10743 -16.72599 -16.46573 -16.37546 -16.05672 -15.94070 -15.35042 -15.22449 -14.80646 -14.51519 -14.24740 -13.72174 -13.54885 -13.26600 -13.22363 -13.00663 -12.87616 -12.68579 -12.65202 -12.62502 -12.48653 -12.40526 -12.06682 -11.91026 -11.66145 -11.52749 -11.44328 -11.24275 -11.05158 -10.79753 -10.55389 -9.35357 -9.19940 -8.20678 -6.32112 1.39244 1.42800 1.50682 2.40430 2.81638 2.90818 3.12236 3.67061 3.75816 3.83052 4.00392 4.10037 4.18178 4.22327 4.29849 4.31664 4.37966 4.39383 4.53221 4.59192 4.64944 4.70857 4.74669 4.77613 4.82598 4.89209 4.90144 4.93148 5.01615 5.11194 5.16332 5.19223 5.21887 5.28049 5.35420 5.49528 5.71706 5.83539 5.97981 5.99845 6.18511 6.21757 6.27952 6.84248 6.98800 7.37083 8.91234 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.025616 B = 0.003440 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.787642 B = 8137.095158 C = 8924.105035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.105 3.895 3 H 0.083 0.917 4 O -0.573 6.573 5 C 0.027 3.973 6 N -0.543 5.543 7 C 0.066 3.934 8 C 0.053 3.947 9 N -0.537 5.537 10 C 0.070 3.930 11 C -0.095 4.095 12 C 0.028 3.972 13 C -0.544 4.544 14 H 0.059 0.941 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.266 1.266 21 C 0.079 3.921 22 H 0.032 0.968 23 C -0.141 4.141 24 C 0.071 3.929 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.384 0.616 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.023 0.977 34 H 0.079 0.921 35 H 0.018 0.982 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.051 0.949 39 H -0.013 1.013 40 H -0.008 1.008 41 H 0.264 0.736 42 H 0.062 0.938 43 H 0.047 0.953 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.091 -8.079 1.091 26.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.045 3.955 3 H 0.101 0.899 4 O -0.379 6.379 5 C -0.101 4.101 6 N -0.268 5.268 7 C -0.062 4.062 8 C -0.075 4.075 9 N -0.262 5.262 10 C -0.058 4.058 11 C -0.133 4.133 12 C -0.010 4.010 13 C -0.582 4.582 14 H 0.078 0.922 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.790 3.210 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.030 4.030 22 H 0.050 0.950 23 C -0.199 4.199 24 C -0.057 4.057 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.232 0.768 29 H 0.111 0.889 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.036 0.964 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.006 0.994 40 H 0.011 0.989 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.100 0.900 45 H 0.114 0.886 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -24.657 -7.553 1.195 25.815 hybrid contribution 0.765 0.277 -0.045 0.815 sum -23.891 -7.276 1.150 25.001 Atomic orbital electron populations 1.22403 0.94512 1.03503 1.03046 1.21922 0.93458 0.96043 0.84047 0.89939 1.86597 1.77898 1.29817 1.43627 1.22896 0.86734 1.02377 0.98094 1.62091 1.08083 1.09312 1.47269 1.22102 0.93371 0.90383 1.00343 1.22211 0.95107 0.97887 0.92336 1.62334 1.07114 1.09890 1.46871 1.22021 0.86843 0.97028 0.99913 1.21532 0.95940 0.95252 1.00526 1.18945 0.91776 0.95589 0.94657 1.21657 0.92261 0.93887 1.50437 0.92244 1.26002 0.97296 1.01898 0.94680 1.70095 1.02462 1.33332 1.51527 0.85486 0.77019 0.79235 0.79230 1.19179 1.20715 1.19055 1.21764 0.95056 0.88287 0.97859 0.95020 1.21811 1.00709 0.99344 0.98013 1.22159 0.92865 0.97861 0.92775 0.91973 0.90828 0.90940 0.76767 0.88899 0.93454 0.94229 0.89788 0.95824 0.90261 0.96416 0.90926 0.92767 0.93011 0.99427 0.98919 0.92725 0.91854 0.93363 0.89968 0.88578 0.94223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 9.53 71.98 0.69 -1.11 16 2 C 0.10 1.60 3.47 30.60 0.11 1.71 16 3 H 0.08 1.48 6.49 -2.39 -0.02 1.47 16 4 O -0.57 -10.91 13.20 -148.98 -1.97 -12.87 16 5 C 0.03 0.40 4.62 86.30 0.40 0.80 16 6 N -0.54 -11.72 4.58 -895.70 -4.10 -15.82 16 7 C 0.07 1.62 5.41 86.31 0.47 2.09 16 8 C 0.05 1.62 4.93 86.31 0.43 2.04 16 9 N -0.54 -16.88 4.67 -870.49 -4.07 -20.95 16 10 C 0.07 2.59 4.46 86.31 0.38 2.97 16 11 C -0.09 -4.13 4.42 30.60 0.14 -4.00 16 12 C 0.03 1.54 4.97 29.85 0.15 1.69 16 13 C -0.54 -32.03 9.11 25.60 0.23 -31.80 16 14 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 15 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 16 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16 17 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 21 C 0.08 2.06 2.52 44.92 0.11 2.17 16 22 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 23 C -0.14 -3.20 8.87 71.98 0.64 -2.56 16 24 C 0.07 1.49 4.89 86.31 0.42 1.91 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.38 4.51 9.05 -74.06 -0.67 3.84 16 29 H 0.09 1.08 8.03 -2.39 -0.02 1.07 16 30 H 0.05 0.68 8.12 -2.39 -0.02 0.66 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 1.94 6.34 -2.39 -0.02 1.93 16 33 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 2.57 5.99 -2.39 -0.01 2.56 16 35 H 0.02 0.69 8.08 -2.39 -0.02 0.67 16 36 H 0.07 2.69 6.86 -2.38 -0.02 2.68 16 37 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.05 2.22 6.26 -2.39 -0.01 2.21 16 39 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 40 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.05 1.24 6.59 -2.39 -0.02 1.22 16 44 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.10 1.58 8.07 -2.39 -0.02 1.56 16 46 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -68.65 352.89 -2.95 -71.59 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.26 Total: 12.43 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: 4.62 Total: -23.69 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -7.88 Total: -94.68 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -1.97 Total: -12.87 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -68.65 -2.95 -71.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189572827.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.858 kcal (2) G-P(sol) polarization free energy of solvation -68.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds