Wall clock time and date at job start Mon Mar 30 2020 00:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00004 * 2 1 4 4 C 1.53001 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.08994 * 110.88811 * 302.57170 * 4 3 2 6 6 C 1.55163 * 111.03702 * 178.66670 * 4 3 2 7 7 C 1.54311 * 102.86310 * 206.21786 * 6 4 3 8 8 N 1.47024 * 107.27644 * 22.52881 * 7 6 4 9 9 C 1.34778 * 125.65063 * 180.97015 * 8 7 6 10 10 O 1.21581 * 120.00499 * 179.68939 * 9 8 7 11 11 N 1.34783 * 119.99586 * 359.68811 * 9 8 7 12 12 C 1.46505 * 119.99652 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.46881 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47119 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.47428 * 108.70504 * 0.70168 * 8 7 6 24 24 H 1.09002 * 109.47003 * 59.99859 * 1 2 3 25 25 H 1.08998 * 109.47502 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47241 * 300.00332 * 1 2 3 27 27 H 1.09006 * 109.47245 * 59.99779 * 3 2 1 28 28 H 1.08997 * 109.47327 * 299.99586 * 3 2 1 29 29 H 1.09004 * 110.71818 * 324.77772 * 6 4 3 30 30 H 1.09000 * 110.71884 * 88.05026 * 6 4 3 31 31 H 1.08997 * 109.98846 * 263.05176 * 7 6 4 32 32 H 1.08997 * 109.77402 * 141.88356 * 7 6 4 33 33 H 0.96993 * 119.99868 * 0.02562 * 11 9 8 34 34 H 1.08998 * 109.46922 * 60.00542 * 12 11 9 35 35 H 1.08994 * 109.47094 * 300.00180 * 12 11 9 36 36 H 1.09004 * 109.46806 * 60.00265 * 13 12 11 37 37 H 1.09000 * 109.47828 * 300.00569 * 13 12 11 38 38 H 1.09004 * 109.47066 * 60.00422 * 14 13 12 39 39 H 1.08994 * 109.47405 * 300.00252 * 14 13 12 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 41 41 H 1.08997 * 110.36376 * 94.93411 * 23 8 7 42 42 H 1.08995 * 110.36689 * 217.26141 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8792 0.6075 0.8590 6 6 4.2051 2.5839 -0.0330 7 6 5.5699 2.2958 -0.6930 8 7 5.4288 1.0507 -1.4621 9 6 6.4055 0.4500 -2.1705 10 8 6.1761 -0.5846 -2.7663 11 7 7.6367 0.9965 -2.2184 12 6 8.6982 0.3438 -2.9888 13 6 9.9856 1.1632 -2.8788 14 6 11.0940 0.4820 -3.6839 15 6 12.3623 1.2887 -3.5750 16 1 12.3764 2.1963 -2.9897 17 6 13.5063 0.8649 -4.2175 18 7 13.4891 -0.2405 -4.9299 19 14 15.0802 1.8608 -4.0762 20 1 14.8373 3.0523 -3.2239 21 1 16.1428 1.0231 -3.4641 22 1 15.5123 2.2984 -5.4280 23 6 4.0438 0.5645 -1.3249 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6886 1.8464 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 3.6193 3.2773 -0.6366 30 1 4.3417 2.9704 0.9769 31 1 6.3357 2.1737 0.0728 32 1 5.8371 3.1153 -1.3602 33 1 7.8198 1.8217 -1.7428 34 1 8.3991 0.2766 -4.0348 35 1 8.8698 -0.6578 -2.5948 36 1 10.2849 1.2309 -1.8328 37 1 9.8137 2.1648 -3.2730 38 1 10.7945 0.4147 -4.7298 39 1 11.2661 -0.5196 -3.2901 40 1 14.2938 -0.5385 -5.3822 41 1 3.4364 0.9085 -2.1620 42 1 4.0279 -0.5237 -1.2653 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337880402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:36 Heat of formation + Delta-G solvation = -115.054733 kcal Electronic energy + Delta-G solvation = -20268.509088 eV Core-core repulsion = 17054.078871 eV Total energy + Delta-G solvation = -3214.430217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.37483 -39.44583 -38.08130 -36.92684 -35.21853 -33.70249 -32.54542 -30.43353 -28.81276 -27.67059 -26.29085 -24.79723 -23.75682 -22.29965 -21.45780 -20.89405 -19.11387 -18.49344 -17.81636 -17.09866 -17.04656 -16.75735 -16.44268 -16.29672 -15.75211 -15.45123 -15.13676 -14.56918 -14.28728 -14.08714 -14.01911 -13.71641 -13.47476 -13.23122 -12.91850 -12.76778 -12.55266 -12.42446 -12.33511 -12.16960 -11.84696 -11.68676 -11.65648 -11.61632 -11.31676 -11.14227 -10.57843 -10.55898 -10.27434 -9.53192 -8.19053 -6.30615 1.42083 1.42580 1.54189 1.56652 2.06240 2.42293 2.77707 3.05421 3.14662 3.58846 3.60381 3.96288 4.14778 4.21394 4.26418 4.33693 4.36423 4.48737 4.54613 4.57405 4.61153 4.66918 4.75349 4.83622 4.90661 4.92790 4.94265 4.96880 5.06819 5.15801 5.25800 5.33976 5.44825 5.53627 5.70675 5.84403 6.01325 6.22609 6.27796 6.86508 6.94895 7.38825 7.49651 8.93401 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.054832 B = 0.002541 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.527056 B =11015.945865 C =11442.710021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.422 6.422 3 C 0.073 3.927 4 C -0.093 4.093 5 H 0.087 0.913 6 C -0.107 4.107 7 C 0.088 3.912 8 N -0.640 5.640 9 C 0.710 3.290 10 O -0.643 6.643 11 N -0.727 5.727 12 C 0.149 3.851 13 C -0.099 4.099 14 C 0.023 3.977 15 C -0.539 4.539 16 H 0.068 0.932 17 C -0.006 4.006 18 N -0.936 5.936 19 Si 0.970 3.030 20 H -0.257 1.257 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.130 3.870 24 H 0.049 0.951 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.410 0.590 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.069 0.931 38 H -0.008 1.008 39 H -0.008 1.008 40 H 0.263 0.737 41 H 0.065 0.935 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.579 10.197 14.377 31.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.342 6.342 3 C -0.004 4.004 4 C -0.113 4.113 5 H 0.106 0.894 6 C -0.145 4.145 7 C -0.034 4.034 8 N -0.378 5.378 9 C 0.412 3.588 10 O -0.525 6.525 11 N -0.382 5.382 12 C 0.024 3.976 13 C -0.136 4.136 14 C -0.015 4.015 15 C -0.577 4.577 16 H 0.086 0.914 17 C -0.204 4.204 18 N -0.576 5.576 19 Si 0.794 3.206 20 H -0.181 1.181 21 H -0.206 1.206 22 H -0.206 1.206 23 C 0.007 3.993 24 H 0.067 0.933 25 H 0.106 0.894 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.247 0.753 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.011 0.989 39 H 0.010 0.990 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -25.458 9.161 13.800 30.372 hybrid contribution 0.915 0.199 -0.321 0.990 sum -24.543 9.360 13.478 29.523 Atomic orbital electron populations 1.22890 0.79518 1.03520 1.01010 1.87882 1.21445 1.29195 1.95654 1.22552 0.91217 0.84518 1.02101 1.22336 0.94444 0.97995 0.96495 0.89436 1.22632 0.93278 0.95132 1.03421 1.22348 1.00297 0.85311 0.95410 1.47650 1.10402 1.27543 1.52201 1.15729 0.80751 0.82625 0.79695 1.90880 1.82648 1.26846 1.52124 1.45022 1.08582 1.29375 1.55249 1.21107 0.86013 0.95919 0.94516 1.21580 0.92156 0.98856 1.01054 1.18951 0.93183 0.95104 0.94244 1.21705 0.95909 1.09405 1.30653 0.91383 1.26067 1.03149 0.96280 0.94872 1.70130 1.29787 1.24203 1.33492 0.85328 0.78420 0.78806 0.78037 1.18065 1.20629 1.20599 1.22111 0.80144 0.98916 0.98087 0.93253 0.89382 0.92583 0.90352 0.91905 0.88456 0.86816 0.90340 0.90010 0.75301 0.93561 0.93634 0.91289 0.91234 0.98938 0.98982 0.92829 0.91716 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.13 10.56 -148.98 -1.57 -8.71 16 3 C 0.07 0.81 5.38 71.98 0.39 1.20 16 4 C -0.09 -1.28 3.32 -9.40 -0.03 -1.31 16 5 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 6 C -0.11 -0.87 6.42 31.78 0.20 -0.66 16 7 C 0.09 1.25 6.14 86.72 0.53 1.78 16 8 N -0.64 -15.94 3.33 -829.77 -2.76 -18.71 16 9 C 0.71 24.51 8.49 179.05 1.52 26.03 16 10 O -0.64 -28.79 16.60 -3.97 -0.07 -28.86 16 11 N -0.73 -22.64 5.52 -478.54 -2.64 -25.28 16 12 C 0.15 5.68 5.67 86.38 0.49 6.17 16 13 C -0.10 -3.91 5.27 30.59 0.16 -3.75 16 14 C 0.02 1.22 4.97 29.85 0.15 1.37 16 15 C -0.54 -30.34 9.11 25.60 0.23 -30.10 16 16 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 17 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 18 N -0.94 -57.84 13.29 21.45 0.28 -57.56 16 19 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 20 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 23 C 0.13 2.95 6.24 86.86 0.54 3.49 16 24 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.06 0.58 8.10 -2.39 -0.02 0.56 16 29 H 0.10 0.52 8.04 -2.38 -0.02 0.50 16 30 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.41 9.80 7.46 -92.71 -0.69 9.11 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 2.54 8.14 -2.38 -0.02 2.53 16 37 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 38 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 39 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 40 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 41 H 0.06 1.42 8.00 -2.39 -0.02 1.40 16 42 H 0.05 1.44 8.04 -2.39 -0.02 1.42 16 Total: -1.00 -77.82 347.31 1.46 -76.36 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.29 Total: 10.80 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 5.90 Total: 5.84 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -5.12 Total: -101.55 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -1.64 Total: -37.56 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -77.82 1.46 -76.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337880402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.695 kcal (2) G-P(sol) polarization free energy of solvation -77.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds