Wall clock time and date at job start Mon Mar 30 2020 00:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 114.00149 * 2 1 4 4 H 1.09000 * 110.05235 * 331.41545 * 3 2 1 5 5 C 1.54262 * 110.03270 * 92.83410 * 3 2 1 6 6 C 1.54887 * 104.19651 * 142.89592 * 5 3 2 7 7 C 1.54897 * 102.74800 * 322.05787 * 6 5 3 8 8 C 1.53875 * 110.03228 * 210.00158 * 3 2 1 9 9 H 1.08999 * 110.07265 * 121.40240 * 8 3 2 10 10 C 1.53005 * 110.03105 * 0.02562 * 8 3 2 11 11 N 1.46503 * 109.46592 * 176.38133 * 10 8 3 12 12 C 1.34783 * 119.99449 * 179.97438 * 11 10 8 13 13 O 1.21590 * 119.99935 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99768 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46840 * 180.02562 * 15 14 12 17 17 C 1.50706 * 109.46735 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99611 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00327 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99743 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46828 * 90.00241 * 21 19 17 23 23 H 1.48494 * 109.47178 * 209.99936 * 21 19 17 24 24 H 1.48500 * 109.47075 * 330.00183 * 21 19 17 25 25 H 1.08994 * 109.47535 * 59.99989 * 1 2 3 26 26 H 1.09002 * 109.47281 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47024 * 300.00117 * 1 2 3 28 28 H 1.09005 * 110.48637 * 24.21858 * 5 3 2 29 29 H 1.08996 * 110.48761 * 261.57553 * 5 3 2 30 30 H 1.08996 * 110.75808 * 203.74537 * 6 5 3 31 31 H 1.08997 * 110.75546 * 80.36646 * 6 5 3 32 32 H 1.09000 * 110.48082 * 279.26225 * 7 6 5 33 33 H 1.09005 * 110.59731 * 156.67690 * 7 6 5 34 34 H 1.09000 * 109.47248 * 56.38140 * 10 8 3 35 35 H 1.08996 * 109.46721 * 296.37703 * 10 8 3 36 36 H 0.96992 * 120.00655 * 359.97438 * 11 10 8 37 37 H 0.97000 * 119.99708 * 359.97438 * 14 12 11 38 38 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 39 39 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 40 40 H 1.09001 * 109.47194 * 299.99493 * 16 15 14 41 41 H 1.08992 * 109.47399 * 59.99666 * 16 15 14 42 42 H 0.97000 * 120.00354 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3409 2.0126 -0.4899 5 6 2.2906 1.7591 1.4475 6 6 3.6253 2.5388 1.3494 7 6 4.4266 1.7155 0.3106 8 6 3.3683 1.2778 -0.7229 9 1 3.3586 1.9709 -1.5640 10 6 3.6708 -0.1388 -1.2158 11 7 4.9232 -0.1341 -1.9760 12 6 5.3915 -1.2796 -2.5100 13 8 4.7748 -2.3168 -2.3604 14 7 6.5434 -1.2753 -3.2098 15 6 7.0522 -2.5203 -3.7907 16 6 8.3639 -2.2407 -4.5269 17 6 8.8870 -3.5213 -5.1250 18 1 8.3388 -4.4424 -4.9929 19 6 10.0653 -3.5168 -5.8410 20 7 10.7325 -2.3951 -6.0024 21 14 10.7140 -5.1043 -6.5818 22 1 10.1705 -5.2685 -7.9540 23 1 12.1970 -5.0538 -6.6396 24 1 10.2902 -6.2524 -5.7408 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.4007 0.8954 2.1034 29 1 1.4933 2.4110 1.8042 30 1 4.1376 2.5503 2.3114 31 1 3.4544 3.5533 0.9894 32 1 4.8816 0.8449 0.7829 33 1 5.1894 2.3338 -0.1629 34 1 2.8583 -0.4819 -1.8563 35 1 3.7671 -0.8081 -0.3610 36 1 5.4153 0.6932 -2.0950 37 1 7.0351 -0.4478 -3.3294 38 1 6.3196 -2.9201 -4.4918 39 1 7.2291 -3.2459 -2.9968 40 1 8.1875 -1.5149 -5.3208 41 1 9.0963 -1.8411 -3.8255 42 1 11.5613 -2.3919 -6.5064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343903269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:19 Heat of formation + Delta-G solvation = -124.359665 kcal Electronic energy + Delta-G solvation = -20554.491379 eV Core-core repulsion = 17339.657670 eV Total energy + Delta-G solvation = -3214.833709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.11231 -40.11266 -37.25074 -36.56918 -35.36979 -34.77517 -31.83869 -30.39553 -29.12700 -27.11978 -26.72404 -25.19493 -22.90870 -22.08603 -21.60624 -20.81821 -19.33378 -18.41958 -17.99398 -16.89509 -16.83233 -16.61936 -16.44920 -15.98817 -15.52165 -15.29614 -15.10984 -15.04150 -14.70215 -14.27918 -14.20907 -13.42659 -13.20485 -13.09855 -12.92032 -12.51600 -12.38402 -12.23395 -12.22767 -11.92672 -11.78857 -11.67175 -11.54970 -11.49851 -11.43469 -11.16891 -10.59664 -10.47244 -10.30197 -9.67655 -8.23216 -6.33365 1.42490 1.43232 1.54713 1.79987 2.19657 2.42379 2.87874 3.11527 3.36942 3.60368 3.67996 3.85805 4.28462 4.35218 4.39065 4.48426 4.49294 4.52234 4.53207 4.56957 4.66727 4.77050 4.87213 4.88442 4.91169 5.00433 5.04035 5.19754 5.20982 5.27491 5.33183 5.46636 5.53099 5.57839 5.60813 5.80299 6.08585 6.18667 6.35615 6.79673 7.17564 7.35894 7.63720 8.88813 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.040585 B = 0.002804 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.737660 B = 9984.689664 C =10493.107815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.087 3.913 4 H 0.085 0.915 5 C -0.144 4.144 6 C -0.117 4.117 7 C -0.122 4.122 8 C -0.097 4.097 9 H 0.104 0.896 10 C 0.166 3.834 11 N -0.731 5.731 12 C 0.695 3.305 13 O -0.643 6.643 14 N -0.733 5.733 15 C 0.160 3.840 16 C 0.025 3.975 17 C -0.547 4.547 18 H 0.058 0.942 19 C 0.007 3.993 20 N -0.927 5.927 21 Si 0.965 3.035 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.267 1.267 25 H 0.050 0.950 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.044 0.956 36 H 0.410 0.590 37 H 0.407 0.593 38 H 0.042 0.958 39 H 0.041 0.959 40 H 0.009 0.991 41 H 0.009 0.991 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.905 15.100 14.161 27.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C 0.029 3.971 4 H 0.103 0.897 5 C -0.182 4.182 6 C -0.154 4.154 7 C -0.159 4.159 8 C -0.116 4.116 9 H 0.122 0.878 10 C 0.042 3.958 11 N -0.388 5.388 12 C 0.395 3.605 13 O -0.526 6.526 14 N -0.388 5.388 15 C 0.036 3.964 16 C -0.012 4.012 17 C -0.586 4.586 18 H 0.076 0.924 19 C -0.191 4.191 20 N -0.566 5.566 21 Si 0.790 3.210 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.191 1.191 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.246 0.754 37 H 0.243 0.757 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.214 14.059 14.225 27.051 hybrid contribution 0.718 -0.083 -0.598 0.938 sum -17.496 13.976 13.626 26.213 Atomic orbital electron populations 1.22910 0.80055 1.03262 1.00822 1.87991 1.20984 1.28515 1.95090 1.22940 0.93657 0.84541 0.95990 0.89709 1.22886 0.98862 1.00320 0.96137 1.22409 0.94711 0.99004 0.99304 1.22478 0.97296 0.99959 0.96190 1.22191 0.95039 0.95134 0.99189 0.87802 1.20857 0.83565 0.97366 0.94010 1.45010 1.27070 1.08946 1.57801 1.16225 0.81138 0.84331 0.78843 1.90860 1.61338 1.33214 1.67138 1.45199 1.23989 1.12819 1.56777 1.21066 0.95441 0.84528 0.95392 1.19119 0.90920 0.96670 0.94531 1.21474 1.07741 0.95392 1.33949 0.92384 1.25866 0.96822 0.99991 0.96462 1.70053 1.16831 1.28054 1.41682 0.85441 0.77413 0.79310 0.78859 1.19718 1.20412 1.19146 0.93148 0.89764 0.92782 0.91898 0.89895 0.90793 0.89639 0.92691 0.89668 0.93336 0.93744 0.75367 0.75735 0.93983 0.94055 0.97217 0.97225 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.85 113.37 1.23 1.59 16 2 O -0.41 -8.27 8.47 -148.98 -1.26 -9.53 16 3 C 0.09 1.30 3.36 31.32 0.11 1.40 16 4 H 0.08 0.94 7.81 -2.39 -0.02 0.92 16 5 C -0.14 -1.80 6.56 31.67 0.21 -1.59 16 6 C -0.12 -1.25 6.91 31.89 0.22 -1.03 16 7 C -0.12 -1.69 6.02 31.67 0.19 -1.50 16 8 C -0.10 -1.54 2.98 -10.07 -0.03 -1.57 16 9 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 10 C 0.17 4.21 3.99 86.38 0.34 4.55 16 11 N -0.73 -19.43 5.39 -478.51 -2.58 -22.01 16 12 C 0.69 26.03 8.57 179.05 1.53 27.56 16 13 O -0.64 -30.31 16.34 -4.00 -0.07 -30.38 16 14 N -0.73 -27.14 5.56 -478.52 -2.66 -29.80 16 15 C 0.16 7.28 5.61 86.38 0.48 7.76 16 16 C 0.03 1.30 5.09 29.85 0.15 1.45 16 17 C -0.55 -31.21 9.11 25.60 0.23 -30.97 16 18 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 19 C 0.01 0.41 5.46 84.66 0.46 0.88 16 20 N -0.93 -54.78 13.29 21.45 0.28 -54.50 16 21 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 H 0.05 0.59 8.10 -2.39 -0.02 0.57 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.06 1.00 8.08 -2.38 -0.02 0.98 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.99 7.78 -2.39 -0.02 0.98 16 33 H 0.08 0.93 8.14 -2.38 -0.02 0.92 16 34 H 0.05 1.43 7.71 -2.39 -0.02 1.41 16 35 H 0.04 1.35 7.90 -2.39 -0.02 1.34 16 36 H 0.41 7.90 8.32 -92.71 -0.77 7.13 16 37 H 0.41 12.59 8.49 -92.71 -0.79 11.80 16 38 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -72.75 344.20 0.32 -72.43 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -0.56 Total: 19.05 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 5.13 Total: 8.53 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -4.95 Total: -106.31 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -1.33 Total: -39.91 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -72.75 0.32 -72.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343903269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.932 kcal (2) G-P(sol) polarization free energy of solvation -72.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds