Wall clock time and date at job start Mon Mar 30 2020 01:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46894 * 109.47524 * 2 1 4 4 C 1.46903 * 110.99777 * 72.07735 * 3 2 1 5 5 C 1.53001 * 109.47032 * 68.95994 * 4 3 2 6 6 C 1.46900 * 111.00148 * 196.02905 * 3 2 1 7 7 C 1.53008 * 109.47165 * 163.31209 * 6 3 2 8 8 O 1.42895 * 109.46843 * 65.25772 * 7 6 3 9 9 C 1.42903 * 113.99892 * 180.02562 * 8 7 6 10 10 H 1.08997 * 110.62639 * 333.10652 * 9 8 7 11 11 C 1.55133 * 110.70611 * 96.40339 * 9 8 7 12 12 C 1.54907 * 101.65395 * 154.03595 * 11 9 8 13 13 N 1.47843 * 104.79610 * 322.93118 * 12 11 9 14 14 C 1.46905 * 111.00179 * 146.36447 * 13 12 11 15 15 C 1.50698 * 109.47282 * 69.15383 * 14 13 12 16 16 H 1.08003 * 120.00006 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00233 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99526 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00351 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46971 * 89.99809 * 19 17 15 21 21 H 1.48498 * 109.47293 * 209.99981 * 19 17 15 22 22 H 1.48502 * 109.46886 * 330.00286 * 19 17 15 23 23 C 1.47441 * 108.56593 * 24.09229 * 13 12 11 24 24 H 1.09003 * 109.47470 * 184.36574 * 1 2 3 25 25 H 1.09001 * 109.46991 * 304.36871 * 1 2 3 26 26 H 1.09005 * 109.46704 * 64.36927 * 1 2 3 27 27 H 1.09000 * 109.47010 * 240.00091 * 2 1 3 28 28 H 1.09001 * 109.47206 * 120.00883 * 2 1 3 29 29 H 1.09002 * 109.47398 * 188.95507 * 4 3 2 30 30 H 1.08993 * 109.47309 * 308.95859 * 4 3 2 31 31 H 1.08999 * 109.47088 * 185.21874 * 5 4 3 32 32 H 1.09008 * 109.46999 * 305.21148 * 5 4 3 33 33 H 1.08997 * 109.47426 * 65.20849 * 5 4 3 34 34 H 1.08998 * 109.47058 * 43.31624 * 6 3 2 35 35 H 1.09000 * 109.47614 * 283.31104 * 6 3 2 36 36 H 1.08996 * 109.47325 * 185.25974 * 7 6 3 37 37 H 1.09001 * 109.46763 * 305.26194 * 7 6 3 38 38 H 1.09003 * 110.99371 * 272.12986 * 11 9 8 39 39 H 1.09003 * 110.99552 * 35.94528 * 11 9 8 40 40 H 1.08995 * 110.37570 * 204.09758 * 12 11 9 41 41 H 1.09002 * 110.37276 * 81.75702 * 12 11 9 42 42 H 1.08997 * 109.46876 * 189.15624 * 14 13 12 43 43 H 1.09007 * 109.46798 * 309.15443 * 14 13 12 44 44 H 0.97008 * 120.00184 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.88893 * 239.59974 * 23 13 12 46 46 H 1.09003 * 110.02430 * 118.49352 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7973 2.0219 1.3049 5 6 2.7128 1.3791 2.3488 6 6 3.4379 1.4418 -0.3787 7 6 3.8038 2.8746 -0.7716 8 8 3.6884 3.7258 0.3704 9 6 4.0093 5.0938 0.1104 10 1 4.7081 5.1727 -0.7224 11 6 2.7233 5.9156 -0.1680 12 6 3.1652 7.3399 0.2511 13 7 4.0342 7.1342 1.4293 14 6 5.1086 8.1352 1.4722 15 6 4.5216 9.4896 1.7752 16 1 3.4568 9.5964 1.9209 17 6 5.3437 10.5928 1.8654 18 7 6.6401 10.4630 1.6865 19 14 4.6160 12.2719 2.2403 20 1 4.5877 12.4821 3.7101 21 1 5.4485 13.3251 1.6056 22 1 3.2333 12.3431 1.7034 23 6 4.5864 5.7683 1.3727 24 1 -0.3634 -1.0247 0.0782 25 1 -0.3633 0.5801 0.8483 26 1 -0.3633 0.4446 -0.9266 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5140 0.8899 29 1 2.0203 3.0864 1.2324 30 1 0.7573 1.8880 1.6021 31 1 2.4830 1.7862 3.3335 32 1 2.5549 0.3006 2.3558 33 1 3.7525 1.5924 2.1009 34 1 3.6153 0.7768 -1.2239 35 1 4.0523 1.1284 0.4654 36 1 4.8289 2.8995 -1.1411 37 1 3.1274 3.2211 -1.5529 38 1 2.4606 5.8835 -1.2254 39 1 1.8954 5.5663 0.4491 40 1 2.2978 7.9427 0.5199 41 1 3.7244 7.8161 -0.5543 42 1 5.8241 7.8670 2.2496 43 1 5.6150 8.1662 0.5074 44 1 7.2187 11.2391 1.7503 45 1 4.2881 5.2107 2.2605 46 1 5.6737 5.8077 1.3078 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350149175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:56 Heat of formation + Delta-G solvation = -37.136308 kcal Electronic energy + Delta-G solvation = -21666.839984 eV Core-core repulsion = 18591.621658 eV Total energy + Delta-G solvation = -3075.218326 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.23772 -38.22129 -36.26591 -32.90506 -31.77645 -30.97618 -30.08747 -28.20321 -27.23378 -25.91817 -24.11896 -22.55228 -22.32010 -20.68356 -19.96278 -19.78520 -17.05174 -16.45718 -16.33968 -15.73371 -15.41363 -14.78647 -14.59699 -14.01808 -13.89450 -13.64011 -13.28070 -13.15913 -12.71768 -12.65270 -12.40654 -12.27510 -12.18006 -11.77142 -11.55841 -11.48219 -11.38473 -11.19116 -11.11829 -10.96692 -10.82006 -10.62232 -10.41513 -10.37383 -10.21449 -9.80097 -9.28731 -9.05873 -8.42012 -8.33152 -7.22499 -6.01504 -4.02673 3.33695 3.39273 3.43322 3.76382 3.83048 4.44828 4.76355 4.88393 4.95422 5.02899 5.08405 5.15556 5.26638 5.30668 5.32152 5.33729 5.37218 5.39307 5.43996 5.52485 5.55337 5.58629 5.73486 5.80413 5.89893 5.94819 5.99223 6.02845 6.16083 6.20395 6.28800 6.43265 6.50554 6.64323 6.66803 7.00498 7.05619 7.21141 7.31588 7.47581 7.82756 8.06190 8.20618 8.54665 9.05534 9.61771 11.09563 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.040843 B = 0.003262 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.394505 B = 8582.861514 C = 8695.690329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 N -0.533 5.533 4 C 0.043 3.957 5 C -0.186 4.186 6 C 0.050 3.950 7 C 0.066 3.934 8 O -0.368 6.368 9 C 0.068 3.932 10 H 0.061 0.939 11 C -0.147 4.147 12 C 0.059 3.941 13 N -0.524 5.524 14 C 0.187 3.813 15 C -0.505 4.505 16 H 0.063 0.937 17 C 0.054 3.946 18 N -0.900 5.900 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.288 1.288 22 H -0.273 1.273 23 C 0.048 3.952 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.043 0.957 42 H 0.030 0.970 43 H -0.008 1.008 44 H 0.261 0.739 45 H 0.075 0.925 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.031 -20.333 -5.201 22.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 N -0.257 5.257 4 C -0.084 4.084 5 C -0.244 4.244 6 C -0.078 4.078 7 C -0.011 4.011 8 O -0.287 6.287 9 C 0.010 3.990 10 H 0.079 0.921 11 C -0.186 4.186 12 C -0.069 4.069 13 N -0.249 5.249 14 C 0.062 3.938 15 C -0.544 4.544 16 H 0.081 0.919 17 C -0.147 4.147 18 N -0.540 5.540 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.214 1.214 22 H -0.198 1.198 23 C -0.081 4.081 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.125 0.875 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.010 0.990 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.470 -19.968 -4.926 22.242 hybrid contribution 0.874 0.496 -0.195 1.023 sum -7.596 -19.472 -5.121 21.519 Atomic orbital electron populations 1.21766 0.95012 1.01015 1.02604 1.22130 0.96209 0.89647 1.00458 1.62289 1.16971 1.16406 1.30000 1.22416 0.98476 1.01466 0.86088 1.22335 1.01717 0.99956 1.00417 1.22247 0.89235 0.95683 1.00595 1.22515 0.99090 0.90122 0.89365 1.87931 1.89096 1.18107 1.33575 1.23460 0.95888 0.81342 0.98359 0.92054 1.23183 0.98209 0.96500 1.00690 1.22767 0.97655 0.94403 0.92106 1.63726 1.21487 1.00943 1.38769 1.19957 0.88382 0.89710 0.95759 1.21154 0.94327 0.91531 1.47399 0.91872 1.24999 0.94814 0.99325 0.95568 1.69962 1.03213 1.30397 1.50446 0.86485 0.78991 0.83389 0.78472 1.20614 1.21353 1.19824 1.22808 0.97677 0.91202 0.96410 0.92744 0.92509 0.92097 0.91420 0.94616 0.87549 0.91697 0.92230 0.93661 0.91822 0.90159 0.93109 0.93370 0.92718 0.91832 0.90299 0.90781 0.93859 0.95223 0.99033 0.92949 0.90705 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.04 37.16 0.37 -0.80 16 2 C 0.04 0.38 5.59 -3.83 -0.02 0.36 16 3 N -0.53 -5.61 4.62 -234.63 -1.08 -6.69 16 4 C 0.04 0.48 5.47 -3.82 -0.02 0.46 16 5 C -0.19 -1.99 9.16 37.16 0.34 -1.65 16 6 C 0.05 0.50 5.32 -3.82 -0.02 0.48 16 7 C 0.07 0.75 6.09 37.16 0.23 0.98 16 8 O -0.37 -5.13 7.05 -35.23 -0.25 -5.38 16 9 C 0.07 1.06 3.44 -24.91 -0.09 0.98 16 10 H 0.06 0.93 7.82 -51.93 -0.41 0.52 16 11 C -0.15 -2.32 6.80 -24.60 -0.17 -2.49 16 12 C 0.06 1.15 6.14 -2.30 -0.01 1.14 16 13 N -0.52 -11.64 5.15 -232.69 -1.20 -12.84 16 14 C 0.19 4.97 4.33 -4.97 -0.02 4.95 16 15 C -0.51 -14.44 8.80 -34.44 -0.30 -14.74 16 16 H 0.06 1.79 7.76 -52.48 -0.41 1.38 16 17 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 19 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.05 0.89 6.63 -2.84 -0.02 0.87 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.49 6.48 -51.93 -0.34 0.15 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.53 7.72 -51.93 -0.40 0.13 16 28 H 0.04 0.31 6.11 -51.93 -0.32 -0.01 16 29 H 0.11 1.45 5.60 -51.93 -0.29 1.16 16 30 H 0.06 0.70 6.37 -51.93 -0.33 0.37 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.04 0.44 6.27 -51.92 -0.33 0.11 16 33 H 0.06 0.74 6.38 -51.93 -0.33 0.41 16 34 H 0.08 0.66 7.71 -51.93 -0.40 0.26 16 35 H 0.05 0.53 5.66 -51.93 -0.29 0.23 16 36 H 0.05 0.50 8.11 -51.93 -0.42 0.08 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 41 H 0.04 0.89 7.62 -51.93 -0.40 0.50 16 42 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 43 H -0.01 -0.23 7.85 -51.92 -0.41 -0.63 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.07 1.38 8.06 -51.93 -0.42 0.96 16 46 H 0.05 0.98 7.56 -51.93 -0.39 0.58 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -29.83 350.65 -9.75 -39.57 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -8.39 Total: -2.51 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 0.17 Total: -8.01 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -1.55 Total: -45.81 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.25 Total: -5.38 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.83 -9.75 -39.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350149175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.438 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds