Wall clock time and date at job start Mon Mar 30 2020 00:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99816 * 2 1 4 4 C 1.53354 * 109.41506 * 270.12914 * 3 2 1 5 5 C 1.53195 * 109.14570 * 178.67689 * 4 3 2 6 6 N 1.46926 * 108.89465 * 54.57617 * 5 4 3 7 7 C 1.34774 * 120.63121 * 126.33965 * 6 5 4 8 8 O 1.21582 * 120.00014 * 354.77536 * 7 6 5 9 9 N 1.34782 * 119.99915 * 174.77166 * 7 6 5 10 10 C 1.46498 * 119.99675 * 184.98301 * 9 7 6 11 11 C 1.52997 * 109.46938 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47383 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47342 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00183 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00155 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00319 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99995 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.47058 * 90.00151 * 17 15 13 19 19 H 1.48501 * 109.47441 * 210.00344 * 17 15 13 20 20 H 1.48499 * 109.47086 * 330.00213 * 17 15 13 21 21 C 1.46926 * 118.73722 * 306.32250 * 6 5 4 22 22 C 1.53040 * 109.45662 * 150.00368 * 3 2 1 23 23 H 1.08996 * 109.47077 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46663 * 299.99886 * 1 2 3 25 25 H 1.09004 * 109.47254 * 59.99570 * 1 2 3 26 26 H 1.08994 * 109.44856 * 30.03549 * 3 2 1 27 27 H 1.08997 * 109.68505 * 58.71536 * 4 3 2 28 28 H 1.09002 * 109.47645 * 298.51164 * 4 3 2 29 29 H 1.08999 * 109.58875 * 294.71912 * 5 4 3 30 30 H 1.09002 * 109.58604 * 174.43479 * 5 4 3 31 31 H 0.96993 * 119.99639 * 4.98764 * 9 7 6 32 32 H 1.09007 * 109.47228 * 300.00071 * 10 9 7 33 33 H 1.08998 * 109.47443 * 60.00096 * 10 9 7 34 34 H 1.08999 * 109.47241 * 299.99984 * 11 10 9 35 35 H 1.09004 * 109.47215 * 60.00102 * 11 10 9 36 36 H 1.09007 * 109.46775 * 299.99766 * 12 11 10 37 37 H 1.08998 * 109.47452 * 59.99518 * 12 11 10 38 38 H 0.97003 * 120.00318 * 179.97438 * 16 15 13 39 39 H 1.09010 * 109.58451 * 173.39329 * 21 6 5 40 40 H 1.08999 * 109.58904 * 293.67543 * 21 6 5 41 41 H 1.08993 * 109.50186 * 61.43163 * 22 3 2 42 42 H 1.09004 * 109.52060 * 301.35003 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 2.2146 1.7725 -1.4463 5 6 2.8070 3.1853 -1.4392 6 7 4.0301 3.1842 -0.6251 7 6 5.1913 3.6460 -1.1298 8 8 5.2567 3.9800 -2.2971 9 7 6.2801 3.7377 -0.3406 10 6 7.5110 4.3406 -0.8579 11 6 8.5854 4.3205 0.2312 12 6 9.8708 4.9508 -0.3087 13 6 10.9292 4.9303 0.7638 14 1 10.7073 4.5102 1.7336 15 6 12.1807 5.4489 0.5072 16 7 13.1043 5.4315 1.4433 17 14 12.5645 6.1762 -1.1701 18 1 12.2374 7.6248 -1.1681 19 1 14.0076 5.9950 -1.4698 20 1 11.7536 5.4870 -2.2058 21 6 3.9632 2.6705 0.7498 22 6 3.3593 1.2629 0.7214 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.3450 1.9989 0.5144 27 1 1.2575 1.7820 -1.9678 28 1 2.8995 1.0935 -1.9542 29 1 2.0852 3.8821 -1.0131 30 1 3.0471 3.4860 -2.4590 31 1 6.2486 3.4044 0.5697 32 1 7.8586 3.7733 -1.7213 33 1 7.3139 5.3706 -1.1553 34 1 8.2381 4.8875 1.0948 35 1 8.7824 3.2903 0.5282 36 1 10.2183 4.3839 -1.1725 37 1 9.6736 5.9808 -0.6055 38 1 13.9849 5.7960 1.2627 39 1 4.9666 2.6291 1.1737 40 1 3.3376 3.3267 1.3550 41 1 4.0332 0.5885 0.1933 42 1 3.2155 0.9081 1.7420 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351541312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:33 Heat of formation + Delta-G solvation = -108.265793 kcal Electronic energy + Delta-G solvation = -20717.421602 eV Core-core repulsion = 17503.285776 eV Total energy + Delta-G solvation = -3214.135826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52390 -39.61778 -37.52209 -36.90251 -35.20673 -33.61976 -32.61413 -32.01945 -28.92467 -27.70068 -25.62970 -24.62587 -24.00780 -22.23248 -22.06475 -20.52873 -19.36278 -18.80606 -17.56772 -17.31043 -16.94424 -16.36780 -16.12321 -16.06947 -15.90934 -15.41390 -15.16706 -14.79552 -14.75018 -14.15783 -13.96540 -13.77040 -13.51291 -13.46821 -13.21324 -12.71975 -12.69025 -12.30927 -12.22695 -11.95896 -11.89721 -11.77069 -11.59709 -11.58283 -11.32306 -11.20446 -10.75215 -10.47316 -10.25315 -9.55949 -8.28507 -6.32156 1.37576 1.39476 1.51345 1.59830 2.07097 2.37268 2.79760 2.91155 3.07300 3.70441 3.76712 4.01304 4.08460 4.09568 4.22269 4.27673 4.37629 4.46419 4.50155 4.53544 4.57029 4.65528 4.76671 4.83225 4.86857 4.90893 4.91019 4.97836 5.04964 5.10512 5.23989 5.41571 5.49182 5.54750 5.57075 5.66349 5.88486 6.28489 6.28813 6.75661 6.92359 7.32631 7.50819 8.87802 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.043591 B = 0.002927 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.184144 B = 9563.646117 C =10018.049324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.091 3.909 4 C -0.148 4.148 5 C 0.130 3.870 6 N -0.629 5.629 7 C 0.700 3.300 8 O -0.637 6.637 9 N -0.734 5.734 10 C 0.146 3.854 11 C -0.098 4.098 12 C -0.012 4.012 13 C -0.529 4.529 14 H 0.039 0.961 15 C 0.004 3.996 16 N -0.950 5.950 17 Si 0.947 3.053 18 H -0.267 1.267 19 H -0.285 1.285 20 H -0.249 1.249 21 C 0.111 3.889 22 C -0.129 4.129 23 H 0.091 0.909 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.408 0.592 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.021 0.979 38 H 0.266 0.734 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.777 -8.142 -1.425 29.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.033 3.967 4 C -0.187 4.187 5 C 0.007 3.993 6 N -0.367 5.367 7 C 0.401 3.599 8 O -0.519 6.519 9 N -0.391 5.391 10 C 0.021 3.979 11 C -0.136 4.136 12 C -0.050 4.050 13 C -0.567 4.567 14 H 0.057 0.943 15 C -0.192 4.192 16 N -0.591 5.591 17 Si 0.770 3.230 18 H -0.192 1.192 19 H -0.211 1.211 20 H -0.172 1.172 21 C -0.011 4.011 22 C -0.167 4.167 23 H 0.110 0.890 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.102 0.898 27 H 0.110 0.890 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.247 0.753 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.075 0.925 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -28.447 -8.007 -2.211 29.635 hybrid contribution 0.656 0.281 -0.146 0.728 sum -27.791 -7.726 -2.357 28.941 Atomic orbital electron populations 1.22968 0.79659 1.03624 1.00948 1.87910 1.21339 1.28450 1.95144 1.22208 0.94984 0.84717 0.94786 1.22431 1.01955 0.96080 0.98227 1.21494 0.84439 0.96940 0.96411 1.47389 1.07682 1.65943 1.15652 1.16065 0.81056 0.78467 0.84266 1.90866 1.84856 1.58770 1.17405 1.45249 1.11332 1.65640 1.16912 1.21160 0.82614 0.97370 0.96754 1.21469 0.93544 1.01366 0.97259 1.19465 0.93273 0.96391 0.95882 1.21454 0.96776 1.39049 0.99434 0.94313 1.25975 0.96152 0.96107 1.01011 1.70055 1.05084 1.48139 1.35816 0.85708 0.77451 0.79495 0.80320 1.19180 1.21075 1.17226 1.21853 1.03042 0.94520 0.81692 1.21964 0.95616 0.96677 1.02460 0.89024 0.92710 0.93267 0.89766 0.88954 0.92995 0.89128 0.90762 0.75296 0.92993 0.92505 0.91508 0.91829 0.96202 0.96100 0.92524 0.89050 0.88354 0.92451 0.88124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.82 113.37 1.23 1.45 16 2 O -0.41 -6.58 10.35 -148.98 -1.54 -8.12 16 3 C 0.09 1.20 2.58 30.73 0.08 1.28 16 4 C -0.15 -2.27 5.73 30.78 0.18 -2.10 16 5 C 0.13 2.33 6.43 86.36 0.56 2.89 16 6 N -0.63 -13.26 2.97 -836.89 -2.49 -15.75 16 7 C 0.70 20.88 8.29 179.05 1.49 22.36 16 8 O -0.64 -24.68 15.77 -3.97 -0.06 -24.74 16 9 N -0.73 -20.14 5.47 -478.54 -2.62 -22.76 16 10 C 0.15 4.79 5.68 86.38 0.49 5.28 16 11 C -0.10 -3.58 5.27 30.59 0.16 -3.42 16 12 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 13 C -0.53 -30.06 9.66 25.60 0.25 -29.82 16 14 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 15 C 0.00 0.26 5.47 84.65 0.46 0.72 16 16 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 17 Si 0.95 44.62 27.47 68.60 1.88 46.50 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 21 C 0.11 1.51 6.39 86.36 0.55 2.06 16 22 C -0.13 -1.74 5.73 30.67 0.18 -1.56 16 23 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.05 0.37 8.08 -2.39 -0.02 0.35 16 25 H 0.05 0.38 7.85 -2.39 -0.02 0.36 16 26 H 0.08 0.77 7.78 -2.39 -0.02 0.75 16 27 H 0.09 1.09 7.85 -2.39 -0.02 1.07 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.72 6.99 -2.39 -0.02 1.70 16 31 H 0.41 8.75 5.96 -92.71 -0.55 8.19 16 32 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.06 2.26 8.14 -2.38 -0.02 2.25 16 36 H 0.02 0.91 7.20 -2.38 -0.02 0.89 16 37 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 38 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 39 H 0.09 1.14 5.65 -2.38 -0.01 1.13 16 40 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -74.55 335.48 1.59 -72.96 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.38 Total: 12.33 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 5.73 Total: -1.28 kcal Atomic # 7 Polarization: -92.84 SS G_CDS: -4.80 Total: -97.65 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -1.60 Total: -32.86 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.50 kcal Total: -74.55 1.59 -72.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351541312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.306 kcal (2) G-P(sol) polarization free energy of solvation -74.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds