Wall clock time and date at job start Mon Mar 30 2020 00:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34776 * 120.00027 * 2 1 4 4 O 1.21585 * 120.00004 * 180.02562 * 3 2 1 5 5 N 1.34778 * 119.99902 * 359.97438 * 3 2 1 6 6 C 1.46506 * 119.99948 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.46954 * 180.02562 * 6 5 3 8 8 C 1.52998 * 109.46929 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47348 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99302 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00436 * 179.72505 * 9 8 7 12 12 N 1.31515 * 119.99684 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00405 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46683 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47426 * 119.99743 * 13 11 9 16 16 H 1.48501 * 109.46833 * 239.99986 * 13 11 9 17 17 C 1.46497 * 119.99959 * 180.02562 * 2 1 3 18 18 H 1.09003 * 109.51929 * 180.02562 * 17 2 1 19 19 C 1.53175 * 109.52690 * 59.87046 * 17 2 1 20 20 C 1.53178 * 109.03845 * 183.11177 * 19 17 2 21 21 C 1.53094 * 109.15888 * 56.98553 * 20 19 17 22 22 O 1.42899 * 109.41536 * 302.38622 * 21 20 19 23 23 C 1.42909 * 114.15159 * 61.12792 * 22 21 20 24 24 H 1.09000 * 109.46952 * 89.99971 * 1 2 3 25 25 H 1.08995 * 109.47034 * 210.00061 * 1 2 3 26 26 H 1.09001 * 109.46688 * 330.00219 * 1 2 3 27 27 H 0.96998 * 120.00150 * 0.02562 * 5 3 2 28 28 H 1.09000 * 109.46635 * 60.00517 * 6 5 3 29 29 H 1.08994 * 109.47340 * 300.00676 * 6 5 3 30 30 H 1.09000 * 109.47441 * 60.00504 * 7 6 5 31 31 H 1.09002 * 109.47087 * 299.99950 * 7 6 5 32 32 H 1.09001 * 109.47671 * 60.00109 * 8 7 6 33 33 H 1.08998 * 109.47454 * 300.00107 * 8 7 6 34 34 H 0.97004 * 120.00247 * 180.02562 * 12 11 9 35 35 H 1.08999 * 109.54477 * 302.98319 * 19 17 2 36 36 H 1.09000 * 109.53921 * 63.15452 * 19 17 2 37 37 H 1.08998 * 109.51821 * 176.88300 * 20 19 17 38 38 H 1.08994 * 109.52572 * 297.07445 * 20 19 17 39 39 H 1.08998 * 109.48355 * 62.37236 * 21 20 19 40 40 H 1.09007 * 109.48015 * 182.40669 * 21 20 19 41 41 H 1.09000 * 109.53797 * 178.92642 * 23 22 21 42 42 H 1.09003 * 109.42972 * 58.89370 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1672 -0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1976 3.6032 0.0000 7 6 1.2033 4.7660 -0.0001 8 6 1.9683 6.0910 -0.0001 9 6 0.9890 7.2366 -0.0009 10 1 -0.0728 7.0391 -0.0017 11 6 1.4485 8.5364 0.0047 12 7 2.7415 8.7767 0.0111 13 14 0.2347 9.9563 0.0044 14 1 -1.1511 9.4227 -0.0028 15 1 0.4406 10.7838 1.2201 16 1 0.4496 10.7910 -1.2048 17 6 2.1975 -1.2687 -0.0006 18 1 3.2694 -1.0704 0.0000 19 6 1.8260 -2.0739 -1.2495 20 6 2.5373 -3.4295 -1.2000 21 6 2.1515 -4.1524 0.0932 22 8 2.4961 -3.3363 1.2145 23 6 1.8262 -2.0744 1.2471 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 0.4951 2.3344 -0.0005 28 1 2.8248 3.6609 -0.8895 29 1 2.8236 3.6609 0.8904 30 1 0.5763 4.7082 0.8897 31 1 0.5770 4.7085 -0.8903 32 1 2.5950 6.1488 -0.8901 33 1 2.5949 6.1489 0.8898 34 1 3.0649 9.6913 0.0154 35 1 0.7474 -2.2288 -1.2760 36 1 2.1380 -1.5292 -2.1406 37 1 2.2351 -4.0309 -2.0574 38 1 3.6161 -3.2760 -1.2237 39 1 1.0781 -4.3417 0.0976 40 1 2.6881 -5.0993 0.1543 41 1 2.1283 -1.5242 2.1383 42 1 0.7485 -2.2365 1.2678 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352904421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:27 Heat of formation + Delta-G solvation = -111.710107 kcal Electronic energy + Delta-G solvation = -20788.418960 eV Core-core repulsion = 17574.133777 eV Total energy + Delta-G solvation = -3214.285183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.59073 -40.04144 -37.21154 -36.63324 -35.25723 -34.04206 -32.96543 -31.10082 -28.54431 -27.77197 -26.07565 -25.25677 -23.97185 -22.32154 -21.55109 -20.52445 -19.17990 -18.48088 -17.83826 -17.28922 -16.92503 -16.75206 -16.48398 -15.90385 -15.74721 -15.58786 -15.04238 -14.61024 -14.31574 -14.09967 -14.06597 -13.73724 -13.61371 -13.47647 -13.26341 -12.77967 -12.59936 -12.51707 -12.33527 -12.14546 -11.88815 -11.68426 -11.62733 -11.43071 -11.26830 -11.11592 -10.70433 -10.56017 -10.23018 -9.49867 -8.19234 -6.30807 1.42078 1.42430 1.50942 1.55941 2.05278 2.42067 2.84243 3.06310 3.14701 3.64051 3.80495 3.91802 3.97707 4.12722 4.14675 4.21965 4.26807 4.44452 4.54603 4.59196 4.61405 4.68179 4.75838 4.85307 4.88046 4.94870 4.96742 5.01632 5.15022 5.16246 5.25948 5.44683 5.46516 5.53827 5.70864 5.83728 5.85219 6.21109 6.22521 6.86355 6.92718 7.38882 7.49349 8.93263 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.054896 B = 0.002733 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.929935 B =10241.891984 C =10399.952375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.621 5.621 3 C 0.696 3.304 4 O -0.641 6.641 5 N -0.727 5.727 6 C 0.148 3.852 7 C -0.099 4.099 8 C 0.023 3.977 9 C -0.539 4.539 10 H 0.068 0.932 11 C -0.005 4.005 12 N -0.936 5.936 13 Si 0.968 3.032 14 H -0.257 1.257 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.121 3.879 18 H 0.070 0.930 19 C -0.125 4.125 20 C -0.150 4.150 21 C 0.052 3.948 22 O -0.400 6.400 23 C 0.061 3.939 24 H 0.072 0.928 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.411 0.589 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.069 0.931 32 H -0.008 1.008 33 H -0.008 1.008 34 H 0.263 0.737 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.467 -26.916 -1.245 28.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.359 5.359 3 C 0.397 3.603 4 O -0.523 6.523 5 N -0.385 5.385 6 C 0.024 3.976 7 C -0.137 4.137 8 C -0.015 4.015 9 C -0.577 4.577 10 H 0.086 0.914 11 C -0.203 4.203 12 N -0.577 5.577 13 Si 0.793 3.207 14 H -0.181 1.181 15 H -0.206 1.206 16 H -0.206 1.206 17 C 0.017 3.983 18 H 0.088 0.912 19 C -0.163 4.163 20 C -0.188 4.188 21 C -0.024 4.024 22 O -0.318 6.318 23 C -0.017 4.017 24 H 0.091 0.909 25 H 0.117 0.883 26 H 0.097 0.903 27 H 0.250 0.750 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.010 0.990 33 H 0.010 0.990 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.127 0.873 41 H 0.101 0.899 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.373 -26.849 -1.096 28.146 hybrid contribution -0.326 1.356 -0.227 1.413 sum -8.699 -25.494 -1.323 26.970 Atomic orbital electron populations 1.22068 0.77163 1.04820 1.03478 1.46980 1.07832 1.03306 1.77768 1.16156 0.84894 0.81507 0.77726 1.90879 1.14103 1.86962 1.60310 1.45164 1.10510 1.03840 1.78943 1.21095 0.94665 0.81506 1.00383 1.21578 0.97414 0.92506 1.02175 1.18949 0.95200 0.92252 0.95068 1.21706 0.93893 0.91795 1.50258 0.91399 1.26046 0.97033 1.02358 0.94822 1.70126 1.14824 1.20916 1.51809 0.85345 0.79323 0.78456 0.77583 1.18065 1.20625 1.20624 1.21571 0.97228 0.82447 0.97093 0.91175 1.21927 1.02241 0.95746 0.96386 1.22197 1.00867 0.95943 0.99835 1.22870 1.01360 0.93853 0.84319 1.87964 1.68838 1.28340 1.46671 1.22838 0.97860 0.84032 0.96952 0.90945 0.88274 0.90301 0.75032 0.93645 0.93626 0.91249 0.91272 0.99004 0.98987 0.92828 0.89064 0.92333 0.88052 0.92335 0.90972 0.87310 0.89923 0.90093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 9.21 127.77 1.18 1.97 16 2 N -0.62 -13.65 2.77 -840.10 -2.32 -15.98 16 3 C 0.70 22.20 8.28 179.05 1.48 23.68 16 4 O -0.64 -27.04 15.67 -3.99 -0.06 -27.11 16 5 N -0.73 -21.25 5.42 -478.54 -2.59 -23.84 16 6 C 0.15 5.46 5.67 86.38 0.49 5.95 16 7 C -0.10 -3.83 5.27 30.59 0.16 -3.67 16 8 C 0.02 1.21 4.97 29.85 0.15 1.36 16 9 C -0.54 -30.05 9.11 25.60 0.23 -29.81 16 10 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 11 C -0.01 -0.30 5.46 84.65 0.46 0.17 16 12 N -0.94 -57.57 13.29 21.45 0.28 -57.28 16 13 Si 0.97 43.78 29.54 68.60 2.03 45.81 16 14 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 15 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 17 C 0.12 2.57 2.72 45.08 0.12 2.69 16 18 H 0.07 2.08 6.90 -2.39 -0.02 2.07 16 19 C -0.12 -1.89 5.36 30.71 0.16 -1.72 16 20 C -0.15 -1.86 6.14 30.68 0.19 -1.68 16 21 C 0.05 0.61 6.84 72.01 0.49 1.10 16 22 O -0.40 -7.68 10.76 -148.98 -1.60 -9.29 16 23 C 0.06 1.08 6.16 72.01 0.44 1.52 16 24 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.10 0.69 6.38 -2.39 -0.02 0.68 16 26 H 0.08 0.85 6.36 -2.39 -0.02 0.84 16 27 H 0.41 8.98 6.20 -92.71 -0.58 8.40 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 32 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 33 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 34 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.09 0.94 7.58 -2.39 -0.02 0.92 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.08 0.95 6.57 -2.39 -0.02 0.94 16 Total: -1.00 -75.57 335.85 1.71 -73.86 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.42 Total: 12.27 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 5.57 Total: 1.56 kcal Atomic # 7 Polarization: -92.47 SS G_CDS: -4.63 Total: -97.10 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -1.67 Total: -36.39 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -75.57 1.71 -73.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352904421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.853 kcal (2) G-P(sol) polarization free energy of solvation -75.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds