Wall clock time and date at job start Mon Mar 30 2020 01:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48564 * 111.00077 * 2 1 4 4 C 1.54378 * 104.59344 * 200.96009 * 3 2 1 5 5 C 1.54262 * 105.06087 * 23.84761 * 4 3 2 6 6 O 1.42900 * 110.32703 * 241.00026 * 5 4 3 7 7 C 1.53010 * 110.32172 * 118.89786 * 5 4 3 8 8 N 1.46895 * 109.47023 * 185.00198 * 7 5 4 9 9 C 1.46904 * 111.00014 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.46983 * 180.02562 * 9 8 7 11 11 C 1.52990 * 109.47546 * 59.99805 * 10 9 8 12 12 C 1.53005 * 109.47190 * 299.99392 * 10 9 8 13 13 C 1.53004 * 109.47000 * 180.02562 * 10 9 8 14 14 C 1.50701 * 109.47211 * 180.02562 * 13 10 9 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 10 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 10 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14 22 22 C 1.48558 * 111.00240 * 244.57773 * 2 1 3 23 23 H 1.09001 * 109.46750 * 59.87384 * 1 2 3 24 24 H 1.08995 * 109.47142 * 179.87679 * 1 2 3 25 25 H 1.09003 * 109.46999 * 299.88025 * 1 2 3 26 26 H 1.08997 * 110.41479 * 82.18115 * 3 2 1 27 27 H 1.08997 * 110.40980 * 319.73588 * 3 2 1 28 28 H 1.09001 * 110.32184 * 264.95744 * 4 3 2 29 29 H 1.08998 * 110.32631 * 142.74972 * 4 3 2 30 30 H 0.96703 * 114.00003 * 178.57379 * 6 5 4 31 31 H 1.08999 * 109.46874 * 65.00063 * 7 5 4 32 32 H 1.09000 * 109.46689 * 304.99946 * 7 5 4 33 33 H 1.00901 * 111.00513 * 56.04075 * 8 7 5 34 34 H 1.08995 * 109.46789 * 59.99756 * 9 8 7 35 35 H 1.08998 * 109.46713 * 300.00198 * 9 8 7 36 36 H 1.09005 * 109.47428 * 179.97438 * 11 10 9 37 37 H 1.09004 * 109.47351 * 299.99974 * 11 10 9 38 38 H 1.09006 * 109.47240 * 60.00039 * 11 10 9 39 39 H 1.08995 * 109.47438 * 300.00908 * 12 10 9 40 40 H 1.09004 * 109.46658 * 60.00669 * 12 10 9 41 41 H 1.08996 * 109.47069 * 180.02562 * 12 10 9 42 42 H 1.09000 * 109.47211 * 59.99130 * 13 10 9 43 43 H 1.09007 * 109.46376 * 299.99672 * 13 10 9 44 44 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 45 45 H 1.08999 * 110.40799 * 40.26010 * 22 2 1 46 46 H 1.09001 * 110.41319 * 277.82551 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3870 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0540 -1.3584 6 8 4.3694 -0.9910 -0.8048 7 6 3.7948 0.2398 -2.8183 8 7 3.6728 -0.9923 -3.6088 9 6 4.0042 -0.7480 -5.0190 10 6 3.8654 -2.0511 -5.8086 11 6 2.4265 -2.5603 -5.7036 12 6 4.8206 -3.0994 -5.2346 13 6 4.2111 -1.7968 -7.2772 14 6 4.0738 -3.0801 -8.0551 15 1 3.7707 -3.9866 -7.5522 16 6 4.3411 -3.0984 -9.4076 17 7 4.7105 -1.9946 -10.0199 18 14 4.1785 -4.6909 -10.3703 19 1 2.7944 -4.8133 -10.8945 20 1 5.1381 -4.6844 -11.5036 21 1 4.4734 -5.8409 -9.4784 22 6 2.0015 -0.5954 -1.2526 23 1 -0.3633 0.5158 -0.8889 24 1 -0.3633 -1.0276 -0.0022 25 1 -0.3633 0.5120 0.8911 26 1 2.0080 1.7917 1.0120 27 1 1.4099 2.0212 -0.6602 28 1 4.1483 1.1748 0.2935 29 1 3.6938 2.0995 -1.1699 30 1 4.3963 -1.8387 -1.2693 31 1 4.8182 0.6101 -2.8781 32 1 3.1123 0.9930 -3.2118 33 1 2.7503 -1.3907 -3.5175 34 1 5.0291 -0.3848 -5.0937 35 1 3.3235 -0.0014 -5.4280 36 1 2.3276 -3.4885 -6.2666 37 1 2.1807 -2.7416 -4.6573 38 1 1.7460 -1.8134 -6.1126 39 1 5.8457 -2.7367 -5.3093 40 1 4.5747 -3.2808 -4.1882 41 1 4.7221 -4.0276 -5.7974 42 1 5.2363 -1.4341 -7.3516 43 1 3.5308 -1.0497 -7.6864 44 1 4.8989 -2.0076 -10.9713 45 1 1.4099 -0.2714 -2.1088 46 1 2.0079 -1.6832 -1.1837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358166890.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:40 Heat of formation + Delta-G solvation = -82.268415 kcal Electronic energy + Delta-G solvation = -21855.314432 eV Core-core repulsion = 18778.139031 eV Total energy + Delta-G solvation = -3077.175401 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.77365 -39.02469 -36.97324 -35.42437 -34.09837 -32.39416 -29.85798 -28.91894 -27.88931 -27.67177 -26.47287 -24.98119 -23.73179 -22.23728 -21.09970 -19.56923 -18.33666 -17.88529 -16.94292 -16.83089 -16.56529 -16.27719 -15.60999 -15.36431 -15.21960 -14.88393 -14.41644 -14.30066 -14.10201 -13.90857 -13.79088 -13.41745 -13.11436 -12.91570 -12.80758 -12.68976 -12.51837 -12.45811 -12.32505 -12.27970 -12.23608 -12.13785 -11.94397 -11.58674 -11.38400 -10.94445 -10.84939 -10.61253 -10.50689 -9.50686 -9.38874 -8.14306 -6.21312 1.40902 1.41651 1.52211 2.43565 2.99115 3.13498 3.19857 3.28781 3.62496 3.75000 3.98566 4.13835 4.18192 4.22731 4.33945 4.38356 4.44733 4.46873 4.60683 4.62034 4.74337 4.76888 4.78802 4.84252 4.91329 4.95082 4.98730 5.07626 5.10009 5.13708 5.21736 5.22524 5.52102 5.54499 5.59487 5.64553 5.76562 5.87039 5.92548 5.97397 6.01117 6.36046 6.44498 6.92850 6.94171 7.46267 8.98073 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.036276 B = 0.003488 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.670314 B = 8026.028397 C = 8204.659916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.527 5.527 3 C 0.033 3.967 4 C -0.115 4.115 5 C 0.139 3.861 6 O -0.560 6.560 7 C 0.039 3.961 8 N -0.678 5.678 9 C 0.084 3.916 10 C -0.055 4.055 11 C -0.122 4.122 12 C -0.107 4.107 13 C 0.039 3.961 14 C -0.514 4.514 15 H 0.067 0.933 16 C -0.005 4.005 17 N -0.939 5.939 18 Si 0.956 3.044 19 H -0.275 1.275 20 H -0.288 1.288 21 H -0.262 1.262 22 C 0.009 3.991 23 H 0.031 0.969 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.389 0.611 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.343 0.657 34 H 0.056 0.944 35 H 0.018 0.982 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.035 0.965 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.037 0.963 42 H -0.017 1.017 43 H -0.017 1.017 44 H 0.259 0.741 45 H 0.050 0.950 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.292 5.231 19.982 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.251 5.251 3 C -0.095 4.095 4 C -0.153 4.153 5 C 0.097 3.903 6 O -0.368 6.368 7 C -0.091 4.091 8 N -0.311 5.311 9 C -0.045 4.045 10 C -0.055 4.055 11 C -0.180 4.180 12 C -0.164 4.164 13 C 0.002 3.998 14 C -0.552 4.552 15 H 0.085 0.915 16 C -0.201 4.201 17 N -0.580 5.580 18 Si 0.781 3.219 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.186 1.186 22 C -0.120 4.120 23 H 0.049 0.951 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.239 0.761 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.164 0.836 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.056 0.944 42 H 0.002 0.998 43 H 0.001 0.999 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.366 5.252 20.887 22.458 hybrid contribution -1.022 0.023 -2.662 2.851 sum -7.388 5.275 18.225 20.361 Atomic orbital electron populations 1.22579 0.86952 1.02756 1.01438 1.65371 1.09200 1.15836 1.34650 1.23190 0.94319 0.89948 1.02058 1.22368 0.97552 0.95297 1.00125 1.21843 0.87555 0.90185 0.90669 1.86460 1.62627 1.28695 1.59024 1.22683 1.01822 0.91671 0.92909 1.60427 1.34458 1.27300 1.08925 1.21802 0.99526 0.96055 0.87163 1.20494 0.96217 0.94508 0.94326 1.21689 0.94913 1.00711 1.00659 1.21509 0.97302 0.97592 1.00032 1.19010 0.93867 0.95324 0.91603 1.21629 1.43862 0.96341 0.93347 0.91505 1.25919 0.95479 0.99351 0.99386 1.70106 1.48569 1.29050 1.10278 0.85583 0.77841 0.80215 0.78251 1.20067 1.21365 1.18649 1.23820 0.95467 1.01210 0.91454 0.95059 0.90922 0.90201 0.88910 0.92872 0.90155 0.89136 0.76139 0.90732 0.94212 0.83637 0.92503 0.96389 0.93381 0.91308 0.94553 0.95207 0.90953 0.94369 0.99841 0.99867 0.93187 0.93148 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.53 127.69 1.22 1.38 16 2 N -0.53 -9.80 5.66 -907.64 -5.14 -14.94 16 3 C 0.03 0.52 6.49 86.45 0.56 1.08 16 4 C -0.12 -2.05 6.45 31.49 0.20 -1.84 16 5 C 0.14 2.82 1.21 -9.90 -0.01 2.81 16 6 O -0.56 -13.18 12.96 -148.98 -1.93 -15.11 16 7 C 0.04 0.86 4.60 86.31 0.40 1.26 16 8 N -0.68 -16.79 5.26 -513.89 -2.70 -19.50 16 9 C 0.08 2.73 4.65 86.30 0.40 3.13 16 10 C -0.06 -2.11 0.60 -52.18 -0.03 -2.14 16 11 C -0.12 -4.21 7.89 71.98 0.57 -3.64 16 12 C -0.11 -3.91 8.06 71.98 0.58 -3.33 16 13 C 0.04 2.02 4.04 29.85 0.12 2.14 16 14 C -0.51 -28.15 7.65 25.60 0.20 -27.96 16 15 H 0.07 3.50 5.68 -2.91 -0.02 3.48 16 16 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 17 N -0.94 -57.27 13.29 21.45 0.28 -56.99 16 18 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 22 C 0.01 0.17 4.73 86.45 0.41 0.58 16 23 H 0.03 0.44 7.97 -2.39 -0.02 0.42 16 24 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 0.76 7.97 -2.39 -0.02 0.74 16 28 H 0.08 1.56 7.98 -2.39 -0.02 1.54 16 29 H 0.09 1.37 7.71 -2.39 -0.02 1.35 16 30 H 0.39 7.97 8.66 -74.06 -0.64 7.33 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.34 7.81 5.54 -89.69 -0.50 7.32 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.05 1.82 6.62 -2.38 -0.02 1.80 16 37 H 0.07 1.85 6.57 -2.38 -0.02 1.84 16 38 H 0.04 1.25 8.14 -2.38 -0.02 1.24 16 39 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 2.20 7.60 -2.38 -0.02 2.18 16 41 H 0.04 1.50 6.62 -2.39 -0.02 1.49 16 42 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 43 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 44 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 45 H 0.05 0.93 7.41 -2.39 -0.02 0.91 16 46 H 0.09 1.68 8.08 -2.39 -0.02 1.67 16 Total: -1.00 -63.96 351.69 -2.58 -66.54 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -0.20 Total: 20.09 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: 5.07 Total: -26.34 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -7.56 Total: -91.42 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -1.93 Total: -15.11 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -63.96 -2.58 -66.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358166890.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.724 kcal (2) G-P(sol) polarization free energy of solvation -63.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds