Wall clock time and date at job start Mon Mar 30 2020 01:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46903 * 109.46934 * 2 1 4 4 C 1.46901 * 110.99936 * 66.04608 * 3 2 1 5 5 C 1.46897 * 111.00312 * 189.99784 * 3 2 1 6 6 C 1.52999 * 109.47181 * 170.00120 * 5 3 2 7 7 H 1.08997 * 109.47342 * 60.00206 * 6 5 3 8 8 O 1.42908 * 109.47123 * 300.00010 * 6 5 3 9 9 C 1.53005 * 109.46935 * 180.02562 * 6 5 3 10 10 N 1.46497 * 109.46963 * 185.00092 * 9 6 5 11 11 C 1.36937 * 120.00195 * 269.99945 * 10 9 6 12 12 H 1.07999 * 120.00634 * 141.64452 * 11 10 9 13 13 C 1.38816 * 119.99505 * 321.64662 * 11 10 9 14 14 N 1.31620 * 119.99914 * 156.55134 * 13 11 10 15 15 Si 1.86801 * 120.00013 * 336.54921 * 13 11 10 16 16 H 1.48492 * 109.47096 * 95.13018 * 15 13 11 17 17 H 1.48502 * 109.47056 * 215.13000 * 15 13 11 18 18 H 1.48504 * 109.47227 * 335.12765 * 15 13 11 19 19 C 1.46501 * 120.00221 * 89.99588 * 10 9 6 20 20 C 1.55235 * 110.46759 * 240.05193 * 19 10 9 21 21 C 1.54897 * 102.58588 * 203.39229 * 20 19 10 22 22 C 1.54270 * 104.31214 * 37.93278 * 21 20 19 23 23 C 1.53869 * 106.59756 * 336.32535 * 22 21 20 24 24 H 1.09001 * 109.46485 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46974 * 299.99622 * 1 2 3 26 26 H 1.08998 * 109.46883 * 60.00262 * 1 2 3 27 27 H 1.08994 * 109.47465 * 240.00548 * 2 1 3 28 28 H 1.08999 * 109.47386 * 119.99589 * 2 1 3 29 29 H 1.09001 * 109.47040 * 183.95734 * 4 3 2 30 30 H 1.09003 * 109.47077 * 303.95125 * 4 3 2 31 31 H 1.08997 * 109.47477 * 63.95541 * 4 3 2 32 32 H 1.09004 * 109.46728 * 50.00388 * 5 3 2 33 33 H 1.08996 * 109.47224 * 290.00153 * 5 3 2 34 34 H 0.96699 * 113.99430 * 300.00106 * 8 6 5 35 35 H 1.08996 * 109.47402 * 65.00256 * 9 6 5 36 36 H 1.08999 * 109.46963 * 304.99496 * 9 6 5 37 37 H 0.97006 * 120.00055 * 179.97438 * 14 13 11 38 38 H 1.09004 * 110.43246 * 2.70227 * 19 10 9 39 39 H 1.09001 * 110.89943 * 85.10842 * 20 19 10 40 40 H 1.08995 * 110.77058 * 321.62044 * 20 19 10 41 41 H 1.09000 * 110.48985 * 279.18558 * 21 20 19 42 42 H 1.09004 * 110.48348 * 156.67393 * 21 20 19 43 43 H 1.09004 * 110.02772 * 95.60960 * 22 21 20 44 44 H 1.08994 * 110.03359 * 216.98768 * 22 21 20 45 45 H 1.08997 * 110.03631 * 119.28376 * 23 22 21 46 46 H 1.09000 * 110.03159 * 240.66759 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6701 2.0669 1.2533 5 6 3.4685 1.4313 -0.2381 6 6 3.8998 2.8793 -0.4790 7 1 3.6560 3.4815 0.3962 8 8 3.2127 3.3974 -1.6200 9 6 5.4087 2.9274 -0.7276 10 7 5.8409 4.3226 -0.8396 11 6 5.8513 4.9402 -2.0618 12 1 5.5556 5.9755 -2.1463 13 6 6.2421 4.2355 -3.1922 14 7 5.8369 4.6241 -4.3826 15 14 7.3429 2.7357 -3.0236 16 1 6.5063 1.5095 -2.9854 17 1 8.2680 2.6679 -4.1833 18 1 8.1296 2.8376 -1.7682 19 6 6.2620 5.0574 0.3558 20 6 5.3581 6.3001 0.5756 21 6 6.2619 7.2289 1.4241 22 6 7.6743 7.0264 0.8377 23 6 7.6744 5.6457 0.1585 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.9822 3.1099 1.1988 30 1 0.5919 2.0179 1.4052 31 1 2.1769 1.5792 2.0860 32 1 3.7122 0.8292 -1.1134 33 1 3.9925 1.0361 0.6321 34 1 3.3834 2.9091 -2.4370 35 1 5.6416 2.3995 -1.6524 36 1 5.9292 2.4515 0.1035 37 1 6.1103 4.1319 -5.1726 38 1 6.2384 4.4069 1.2302 39 1 4.4556 6.0323 1.1250 40 1 5.1077 6.7690 -0.3759 41 1 6.2377 6.9311 2.4724 42 1 5.9494 8.2676 1.3163 43 1 7.8889 7.8035 0.1040 44 1 8.4168 7.0510 1.6352 45 1 7.8890 5.7526 -0.9048 46 1 8.4174 4.9996 0.6260 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384065102.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:09 Heat of formation + Delta-G solvation = -49.183791 kcal Electronic energy + Delta-G solvation = -22619.637734 eV Core-core repulsion = 19543.896990 eV Total energy + Delta-G solvation = -3075.740744 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.92918 -38.95852 -37.24514 -35.54813 -33.46128 -32.22960 -30.30724 -29.36978 -28.50283 -27.83749 -25.98815 -24.01753 -22.40833 -21.70939 -21.23704 -20.64973 -18.61172 -17.44216 -17.12154 -16.73606 -16.64233 -16.41314 -15.96517 -15.65823 -15.31127 -14.84498 -14.49138 -14.43434 -14.10058 -13.96296 -13.91340 -13.18256 -12.97856 -12.85932 -12.79094 -12.57181 -12.42158 -12.28767 -12.18650 -11.90136 -11.85207 -11.81045 -11.76375 -11.72831 -11.39341 -11.19494 -11.13221 -10.66006 -10.47844 -9.17362 -8.53619 -8.05301 -5.39468 1.29495 1.44269 1.53549 2.48929 2.86599 3.19098 3.39178 3.83446 3.90033 3.99114 4.03106 4.13715 4.23064 4.26212 4.32133 4.41386 4.51873 4.59234 4.62179 4.65010 4.65927 4.74208 4.75871 4.83122 4.88587 4.91820 4.92933 4.99005 5.03332 5.12388 5.17898 5.23117 5.30765 5.32866 5.36753 5.55829 5.63189 5.64687 6.07760 6.13382 6.21465 6.35781 7.04690 7.16749 7.78259 8.19229 9.15152 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.015847 B = 0.006735 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.525679 B = 4156.316107 C = 5272.821213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 N -0.549 5.549 4 C 0.025 3.975 5 C 0.029 3.971 6 C 0.106 3.894 7 H 0.084 0.916 8 O -0.550 6.550 9 C 0.101 3.899 10 N -0.599 5.599 11 C -0.208 4.208 12 H 0.032 0.968 13 C -0.017 4.017 14 N -0.949 5.949 15 Si 0.928 3.072 16 H -0.274 1.274 17 H -0.319 1.319 18 H -0.263 1.263 19 C 0.164 3.836 20 C -0.129 4.129 21 C -0.113 4.113 22 C -0.114 4.114 23 C -0.137 4.137 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.364 0.636 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.257 0.743 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.036 0.964 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.047 0.953 44 H 0.079 0.921 45 H 0.042 0.958 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.960 -7.250 14.829 16.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 N -0.274 5.274 4 C -0.122 4.122 5 C -0.100 4.100 6 C 0.044 3.956 7 H 0.101 0.899 8 O -0.353 6.353 9 C -0.025 4.025 10 N -0.320 5.320 11 C -0.339 4.339 12 H 0.050 0.950 13 C -0.212 4.212 14 N -0.594 5.594 15 Si 0.758 3.242 16 H -0.201 1.201 17 H -0.248 1.248 18 H -0.188 1.188 19 C 0.058 3.942 20 C -0.169 4.169 21 C -0.150 4.150 22 C -0.152 4.152 23 C -0.176 4.176 24 H 0.093 0.907 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.210 0.790 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.061 0.939 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.391 -6.607 14.747 16.746 hybrid contribution 1.222 -1.310 -0.635 1.900 sum -3.169 -7.916 14.113 16.489 Atomic orbital electron populations 1.21758 0.93943 1.02235 1.02081 1.22162 0.96961 0.88138 1.00715 1.61886 1.13259 1.16504 1.35748 1.22414 1.01837 0.98875 0.89117 1.22792 0.88348 0.97843 1.01003 1.22463 0.91679 0.92343 0.89082 0.89860 1.86539 1.71022 1.59257 1.18519 1.22005 0.94477 0.86354 0.99637 1.44140 1.74432 1.09580 1.03841 1.18213 1.35557 0.96296 0.83797 0.95021 1.25873 0.99946 1.00642 0.94765 1.70038 1.46804 1.43767 0.98793 0.86097 0.80555 0.81206 0.76347 1.20125 1.24838 1.18753 1.21591 0.92012 0.92451 0.88162 1.22821 0.98076 0.97404 0.98551 1.22256 0.94355 0.99075 0.99362 1.22015 0.97740 0.96018 0.99427 1.22494 0.98077 0.96843 1.00211 0.90743 0.92312 0.93111 0.91303 0.94356 0.92531 0.90346 0.94959 0.91267 0.93045 0.78994 0.94313 0.91308 0.93409 0.90287 0.92391 0.94560 0.89919 0.91807 0.93367 0.90256 0.93896 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.84 71.98 0.71 -1.99 16 2 C 0.05 1.05 5.68 86.30 0.49 1.54 16 3 N -0.55 -15.06 4.63 -922.46 -4.27 -19.33 16 4 C 0.03 0.61 9.13 127.69 1.17 1.78 16 5 C 0.03 0.85 4.62 86.30 0.40 1.25 16 6 C 0.11 3.83 3.08 30.60 0.09 3.92 16 7 H 0.08 3.02 6.55 -2.39 -0.02 3.00 16 8 O -0.55 -24.13 12.68 -148.98 -1.89 -26.01 16 9 C 0.10 3.99 4.19 86.38 0.36 4.36 16 10 N -0.60 -26.78 2.07 -671.40 -1.39 -28.17 16 11 C -0.21 -11.41 7.68 84.03 0.65 -10.77 16 12 H 0.03 2.02 6.87 -2.91 -0.02 2.00 16 13 C -0.02 -0.97 5.28 84.86 0.45 -0.52 16 14 N -0.95 -58.78 13.97 21.65 0.30 -58.47 16 15 Si 0.93 45.12 25.18 68.60 1.73 46.85 16 16 H -0.27 -12.46 6.65 99.48 0.66 -11.80 16 17 H -0.32 -16.21 7.11 99.48 0.71 -15.50 16 18 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 19 C 0.16 6.14 3.40 46.19 0.16 6.30 16 20 C -0.13 -4.64 6.47 32.01 0.21 -4.44 16 21 C -0.11 -3.15 6.82 31.67 0.22 -2.94 16 22 C -0.11 -3.38 6.80 31.32 0.21 -3.17 16 23 C -0.14 -5.00 6.41 31.32 0.20 -4.80 16 24 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.06 1.04 6.47 -2.39 -0.02 1.03 16 26 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.53 7.93 -2.39 -0.02 1.51 16 28 H 0.04 0.76 8.12 -2.39 -0.02 0.74 16 29 H 0.06 1.55 6.47 -2.39 -0.02 1.53 16 30 H 0.08 1.67 6.30 -2.39 -0.02 1.66 16 31 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 2.06 7.93 -2.39 -0.02 2.04 16 33 H 0.05 1.31 8.12 -2.39 -0.02 1.29 16 34 H 0.36 15.89 9.04 -74.06 -0.67 15.22 16 35 H 0.04 1.69 3.45 -2.39 -0.01 1.68 16 36 H 0.07 2.32 7.92 -2.39 -0.02 2.30 16 37 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 38 H 0.08 2.55 7.84 -2.38 -0.02 2.53 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.04 1.60 6.62 -2.39 -0.02 1.58 16 41 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 45 H 0.04 1.91 6.92 -2.39 -0.02 1.90 16 46 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -65.43 346.93 0.01 -65.42 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.22 Total: 29.19 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 5.31 Total: -9.48 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -5.36 Total: -105.97 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -1.89 Total: -26.01 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.73 Total: 46.85 kcal Total: -65.43 0.01 -65.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384065102.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.241 kcal (2) G-P(sol) polarization free energy of solvation -65.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds