Wall clock time and date at job start Mon Mar 30 2020 01:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46864 * 2 1 4 4 C 1.53004 * 109.46839 * 119.99718 * 2 1 3 5 5 C 1.53003 * 109.46695 * 185.00074 * 4 2 1 6 6 H 1.09001 * 109.50666 * 305.08585 * 5 4 2 7 7 C 1.53093 * 109.50311 * 185.00453 * 5 4 2 8 8 O 1.43025 * 109.25673 * 183.21734 * 7 5 4 9 9 C 1.43021 * 113.73616 * 58.66793 * 8 7 5 10 10 C 1.53089 * 109.25685 * 301.33082 * 9 8 7 11 11 N 1.47012 * 109.26191 * 56.85316 * 10 9 8 12 12 N 1.46895 * 109.47243 * 240.00123 * 2 1 3 13 13 C 1.46901 * 111.00344 * 84.99508 * 12 2 1 14 14 C 1.52998 * 109.47460 * 179.97438 * 13 12 2 15 15 C 1.53005 * 109.46934 * 300.00562 * 14 13 12 16 16 C 1.53001 * 109.46790 * 60.00117 * 14 13 12 17 17 C 1.50691 * 109.47237 * 180.02562 * 14 13 12 18 18 H 1.08001 * 120.00135 * 356.86464 * 17 14 13 19 19 C 1.37873 * 120.00278 * 176.86324 * 17 14 13 20 20 N 1.31518 * 119.99999 * 5.81610 * 19 17 14 21 21 Si 1.86800 * 120.00395 * 185.81800 * 19 17 14 22 22 H 1.48500 * 109.47181 * 85.02318 * 21 19 17 23 23 H 1.48504 * 109.47292 * 205.02687 * 21 19 17 24 24 H 1.48507 * 109.47104 * 325.02442 * 21 19 17 25 25 H 1.08997 * 109.46745 * 299.99693 * 1 2 3 26 26 H 1.08994 * 109.47114 * 60.00028 * 1 2 3 27 27 H 1.09007 * 109.46727 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47229 * 305.00322 * 4 2 1 29 29 H 1.09002 * 109.46787 * 65.00578 * 4 2 1 30 30 H 1.08998 * 109.50918 * 303.14636 * 7 5 4 31 31 H 1.08998 * 109.51149 * 63.28673 * 7 5 4 32 32 H 1.08999 * 109.50370 * 61.26488 * 9 8 7 33 33 H 1.08998 * 109.50474 * 181.35237 * 9 8 7 34 34 H 1.09003 * 109.50868 * 176.78678 * 10 9 8 35 35 H 1.09005 * 109.51198 * 296.86698 * 10 9 8 36 36 H 1.00903 * 110.99921 * 177.61018 * 11 10 9 37 37 H 1.00907 * 110.99860 * 321.04580 * 12 2 1 38 38 H 1.08994 * 109.47250 * 300.00697 * 13 12 2 39 39 H 1.09003 * 109.46530 * 60.00327 * 13 12 2 40 40 H 1.08994 * 109.47415 * 53.83010 * 15 14 13 41 41 H 1.08998 * 109.46662 * 173.82908 * 15 14 13 42 42 H 1.09000 * 109.46622 * 293.82581 * 15 14 13 43 43 H 1.08998 * 109.47122 * 60.00547 * 16 14 13 44 44 H 1.09001 * 109.46784 * 179.97438 * 16 14 13 45 45 H 1.08994 * 109.47531 * 300.00226 * 16 14 13 46 46 H 0.96997 * 120.00230 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3138 6 1 3.9960 -0.9907 0.3865 7 6 4.0864 -1.4385 2.4930 8 8 5.5035 -1.2739 2.5939 9 6 5.9139 0.0842 2.7750 10 6 5.4108 0.9248 1.5986 11 7 3.9500 0.7935 1.4984 12 7 2.0198 -0.6924 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5963 -0.5328 -3.5742 15 6 3.9936 -1.0850 -3.2851 16 6 1.6474 -1.6893 -3.8953 17 6 2.6612 0.4060 -4.7511 18 1 2.3180 1.4249 -4.6487 19 6 3.1588 -0.0357 -5.9587 20 7 3.4698 -1.3036 -6.1176 21 14 3.3913 1.1668 -7.3692 22 1 4.7087 1.8388 -7.2347 23 1 3.3393 0.4328 -8.6591 24 1 2.3105 2.1848 -7.3351 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0278 -0.0005 28 1 1.6054 -0.2617 2.1370 29 1 1.7517 -1.7715 1.2056 30 1 3.6139 -1.0966 3.4138 31 1 3.8528 -2.4910 2.3323 32 1 5.4944 0.4703 3.7040 33 1 7.0019 0.1328 2.8190 34 1 5.6720 1.9706 1.7605 35 1 5.8727 0.5730 0.6760 36 1 3.5855 1.3689 0.7539 37 1 1.4496 -1.4979 -1.4100 38 1 1.0872 0.6163 -2.5525 39 1 2.7589 1.0462 -2.1182 40 1 3.9685 -1.6763 -2.3698 41 1 4.3146 -1.7141 -4.1153 42 1 4.6932 -0.2579 -3.1643 43 1 0.6519 -1.2959 -4.1013 44 1 2.0132 -2.2272 -4.7700 45 1 1.6008 -2.3682 -3.0440 46 1 3.8194 -1.6145 -6.9673 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000423166064.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:03 Heat of formation + Delta-G solvation = -57.031252 kcal Electronic energy + Delta-G solvation = -22365.472538 eV Core-core repulsion = 19289.391503 eV Total energy + Delta-G solvation = -3076.081035 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.48616 -37.59117 -35.56734 -34.11768 -32.20043 -31.14871 -28.91301 -27.15419 -25.94970 -25.57572 -25.21637 -23.82738 -22.63090 -20.64800 -19.83462 -18.49575 -16.85231 -16.11476 -15.86458 -15.39416 -15.08393 -14.77610 -14.39989 -14.32585 -14.10122 -13.88138 -13.30654 -12.82203 -12.80609 -12.45467 -12.09405 -11.92839 -11.76096 -11.50429 -11.23385 -11.12480 -10.99323 -10.87652 -10.68965 -10.63306 -10.57815 -10.38907 -10.16702 -10.08374 -9.61103 -9.39390 -9.05989 -8.65274 -8.37685 -8.28182 -7.66665 -5.92733 -4.01819 3.30787 3.37486 3.39666 3.86812 4.18556 4.42961 4.76509 4.78921 4.99944 5.11090 5.19350 5.27035 5.33338 5.38637 5.43857 5.49166 5.61647 5.68356 5.69956 5.85500 5.91506 5.94823 6.06385 6.19309 6.31145 6.32662 6.42808 6.47670 6.71231 6.89090 7.00032 7.06935 7.15788 7.17270 7.35039 7.36391 7.46291 7.74194 7.75235 7.83005 7.97974 8.20087 8.32009 8.54813 8.99458 9.62951 11.08446 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.021344 B = 0.004728 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.519379 B = 5920.435228 C = 6484.540964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.079 3.921 3 H 0.072 0.928 4 C -0.095 4.095 5 C 0.055 3.945 6 H 0.072 0.928 7 C 0.068 3.932 8 O -0.387 6.387 9 C 0.065 3.935 10 C 0.019 3.981 11 N -0.685 5.685 12 N -0.681 5.681 13 C 0.077 3.923 14 C 0.069 3.931 15 C -0.116 4.116 16 C -0.131 4.131 17 C -0.509 4.509 18 H 0.051 0.949 19 C 0.067 3.933 20 N -0.883 5.883 21 Si 0.887 3.113 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.043 0.957 36 H 0.347 0.653 37 H 0.338 0.662 38 H 0.013 0.987 39 H 0.052 0.948 40 H 0.021 0.979 41 H 0.069 0.931 42 H 0.017 0.983 43 H 0.018 0.982 44 H 0.082 0.918 45 H 0.010 0.990 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 1.427 15.918 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.032 4.032 3 H 0.090 0.910 4 C -0.134 4.134 5 C -0.055 4.055 6 H 0.090 0.910 7 C -0.009 4.009 8 O -0.306 6.306 9 C -0.013 4.013 10 C -0.111 4.111 11 N -0.319 5.319 12 N -0.313 5.313 13 C -0.051 4.051 14 C 0.069 3.931 15 C -0.174 4.174 16 C -0.188 4.188 17 C -0.547 4.547 18 H 0.069 0.931 19 C -0.134 4.134 20 N -0.522 5.522 21 Si 0.715 3.285 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.202 1.202 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.166 0.834 37 H 0.157 0.843 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.041 0.959 41 H 0.088 0.912 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.101 0.899 45 H 0.029 0.971 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.042 1.215 16.599 16.643 hybrid contribution -0.800 1.008 -2.061 2.430 sum -0.842 2.223 14.538 14.731 Atomic orbital electron populations 1.22476 0.97833 1.01766 1.01762 1.21555 0.92121 0.97979 0.91540 0.90996 1.21520 0.93752 1.00821 0.97273 1.22095 0.96193 0.88593 0.98575 0.90965 1.22736 0.80875 1.00077 0.97210 1.87980 1.22714 1.26073 1.93787 1.22616 0.99518 0.82175 0.96943 1.22557 0.89255 1.00606 0.98657 1.60731 1.10252 1.09004 1.51879 1.60741 1.56342 1.10136 1.04069 1.22123 0.97642 0.94707 0.90635 1.18079 0.92442 0.92621 0.89979 1.21610 0.97569 0.99149 0.99096 1.21838 0.97808 0.98719 1.00474 1.21083 1.41551 0.96961 0.95139 0.93121 1.24876 0.95460 0.94895 0.98206 1.69852 1.44314 1.13411 1.24626 0.86705 0.78527 0.81352 0.81912 1.20738 1.21377 1.20188 0.92724 0.92609 0.92728 0.91602 0.91506 0.93036 0.88819 0.92806 0.88948 0.90161 0.93894 0.83374 0.84269 0.96896 0.92996 0.95949 0.91211 0.96395 0.96313 0.89907 0.97126 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 9.16 37.16 0.34 -1.88 16 2 C 0.08 1.06 2.47 -67.71 -0.17 0.90 16 3 H 0.07 1.01 6.17 -51.93 -0.32 0.69 16 4 C -0.10 -1.14 4.57 -26.73 -0.12 -1.26 16 5 C 0.06 0.73 2.63 -67.60 -0.18 0.55 16 6 H 0.07 1.18 7.62 -51.93 -0.40 0.79 16 7 C 0.07 0.84 6.29 37.21 0.23 1.07 16 8 O -0.39 -5.36 10.83 -35.23 -0.38 -5.74 16 9 C 0.06 0.73 7.01 37.20 0.26 0.99 16 10 C 0.02 0.23 6.76 -3.72 -0.03 0.20 16 11 N -0.68 -8.69 6.56 -106.46 -0.70 -9.38 16 12 N -0.68 -11.26 4.73 -106.72 -0.50 -11.77 16 13 C 0.08 1.55 4.38 -3.82 -0.02 1.53 16 14 C 0.07 1.64 0.57 -155.66 -0.09 1.55 16 15 C -0.12 -2.81 8.05 37.16 0.30 -2.51 16 16 C -0.13 -3.04 7.95 37.16 0.30 -2.75 16 17 C -0.51 -13.59 8.01 -34.45 -0.28 -13.86 16 18 H 0.05 1.36 7.75 -52.49 -0.41 0.95 16 19 C 0.07 1.81 5.13 -17.82 -0.09 1.72 16 20 N -0.88 -24.45 9.46 55.43 0.52 -23.93 16 21 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.76 7.45 -51.93 -0.39 0.37 16 27 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.35 4.55 7.04 -39.29 -0.28 4.27 16 37 H 0.34 5.68 6.51 -39.29 -0.26 5.43 16 38 H 0.01 0.26 7.44 -51.93 -0.39 -0.12 16 39 H 0.05 1.07 8.06 -51.93 -0.42 0.65 16 40 H 0.02 0.49 7.42 -51.93 -0.39 0.11 16 41 H 0.07 1.85 6.25 -51.93 -0.32 1.53 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 2.16 6.11 -51.93 -0.32 1.85 16 45 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 46 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 345.80 15.07 5.21 5.21 Total: -1.00 -27.36 345.80 -8.83 -36.19 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -8.42 Total: 7.07 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 0.47 Total: -13.75 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -0.68 Total: -45.08 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.38 Total: -5.74 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.36 -8.83 -36.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423166064.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.841 kcal (2) G-P(sol) polarization free energy of solvation -27.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds