Wall clock time and date at job start Mon Mar 30 2020 00:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 114.00123 * 2 1 4 4 C 1.52995 * 109.47143 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.47080 * 174.99487 * 4 3 2 6 6 N 1.46499 * 109.47455 * 295.00083 * 4 3 2 7 7 C 1.34777 * 120.00199 * 205.00257 * 6 4 3 8 8 O 1.21283 * 119.99750 * 359.97438 * 7 6 4 9 9 C 1.50702 * 119.99928 * 180.27479 * 7 6 4 10 10 H 1.09003 * 109.46824 * 319.71785 * 9 7 6 11 11 N 1.46900 * 109.46704 * 199.72391 * 9 7 6 12 12 C 1.53002 * 109.47121 * 79.72099 * 9 7 6 13 13 C 1.52996 * 109.46946 * 185.00076 * 12 9 7 14 14 C 1.50694 * 109.47332 * 179.97438 * 13 12 9 15 15 H 1.08000 * 119.99886 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00223 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99806 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00191 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47250 * 89.99324 * 18 16 14 20 20 H 1.48496 * 109.47102 * 209.99702 * 18 16 14 21 21 H 1.48501 * 109.46801 * 329.99457 * 18 16 14 22 22 C 1.53000 * 109.47023 * 55.00162 * 4 3 2 23 23 C 1.53003 * 117.49778 * 248.74582 * 22 4 3 24 24 C 1.53003 * 117.49721 * 180.08573 * 22 4 3 25 25 H 1.08998 * 109.47057 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46774 * 299.99586 * 1 2 3 27 27 H 1.08994 * 109.47268 * 59.99526 * 1 2 3 28 28 H 1.09004 * 109.47308 * 60.00084 * 3 2 1 29 29 H 1.08999 * 109.46861 * 300.00263 * 3 2 1 30 30 H 0.97000 * 119.99484 * 24.99354 * 6 4 3 31 31 H 1.00907 * 110.99710 * 176.04704 * 11 9 7 32 32 H 1.00898 * 110.99811 * 299.99578 * 11 9 7 33 33 H 1.08996 * 109.46933 * 304.99916 * 12 9 7 34 34 H 1.08998 * 109.47170 * 65.00270 * 12 9 7 35 35 H 1.09000 * 109.47119 * 300.00211 * 13 12 9 36 36 H 1.09002 * 109.47419 * 59.99484 * 13 12 9 37 37 H 0.97006 * 119.99834 * 179.97438 * 17 16 14 38 38 H 1.08997 * 115.55344 * 34.41737 * 22 4 3 39 39 H 1.09006 * 117.49635 * 359.97438 * 23 22 4 40 40 H 1.08997 * 117.49768 * 145.02028 * 23 22 4 41 41 H 1.08999 * 117.49745 * 214.97098 * 24 22 4 42 42 H 1.08996 * 117.49882 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1765 -0.0903 6 7 3.9768 0.5639 1.2508 7 6 5.2210 0.7939 1.7151 8 8 5.9754 1.5144 1.0965 9 6 5.6770 0.1504 2.9992 10 1 4.8637 0.1711 3.7247 11 7 6.8292 0.8880 3.5342 12 6 6.0812 -1.3000 2.7274 13 6 6.4251 -1.9898 4.0491 14 6 6.8227 -3.4185 3.7815 15 1 6.8299 -3.7966 2.7699 16 6 7.1783 -4.2427 4.8280 17 7 7.5248 -5.4897 4.5945 18 14 7.1666 -3.5886 6.5777 19 1 5.8286 -3.8134 7.1813 20 1 8.1964 -4.2983 7.3783 21 1 7.4656 -2.1341 6.5643 22 6 3.9780 0.3197 -1.1826 23 6 4.5707 -1.0555 -0.8689 24 6 5.4784 0.0763 -1.3572 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.3734 -0.0126 1.7454 31 1 7.1137 0.5155 4.4278 32 1 7.5970 0.8834 2.8796 33 1 5.2542 -1.8240 2.2485 34 1 6.9514 -1.3178 2.0712 35 1 7.2521 -1.4657 4.5280 36 1 5.5550 -1.9720 4.7054 37 1 7.7754 -6.0695 5.3307 38 1 3.3751 0.4138 -2.0858 39 1 4.6457 -1.3439 0.1796 40 1 4.3579 -1.8661 -1.5659 41 1 5.8624 0.0097 -2.3751 42 1 6.1502 0.5326 -0.6302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424158120.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:44 Heat of formation + Delta-G solvation = -87.773818 kcal Electronic energy + Delta-G solvation = -21637.618142 eV Core-core repulsion = 18424.370914 eV Total energy + Delta-G solvation = -3213.247228 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.41205 -39.16156 -37.82743 -36.96628 -34.93185 -34.78279 -32.06878 -31.13508 -28.36520 -27.16546 -25.51280 -24.32166 -23.22481 -22.39359 -21.23254 -20.84628 -19.12765 -18.35308 -17.73150 -17.41809 -16.82683 -16.38116 -16.29599 -15.96493 -15.72958 -15.42244 -15.22527 -14.98657 -14.67845 -14.22878 -13.95296 -13.51406 -13.38184 -13.04983 -12.97516 -12.73205 -12.66272 -12.39541 -12.12618 -12.04433 -11.84228 -11.67820 -11.40339 -11.22714 -10.88356 -10.76862 -10.68373 -10.54204 -9.97307 -9.64639 -8.29302 -6.34789 1.38035 1.40287 1.51423 1.63535 2.13769 2.36609 2.88247 2.96457 3.06270 3.65390 3.74453 3.82850 3.94621 4.09189 4.13310 4.20146 4.23619 4.41314 4.50040 4.56836 4.57250 4.63556 4.67925 4.71378 4.78139 4.85262 4.93858 4.96447 5.06138 5.24337 5.36350 5.38740 5.47058 5.55455 5.63151 6.07091 6.25991 6.27459 6.49121 6.58571 6.73637 7.28877 7.29945 8.87635 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019696 B = 0.004634 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.284749 B = 6041.130104 C = 6339.481572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.062 3.938 4 C 0.176 3.824 5 H 0.099 0.901 6 N -0.711 5.711 7 C 0.527 3.473 8 O -0.559 6.559 9 C 0.079 3.921 10 H 0.116 0.884 11 N -0.828 5.828 12 C -0.115 4.115 13 C -0.006 4.006 14 C -0.534 4.534 15 H 0.025 0.975 16 C 0.003 3.997 17 N -0.953 5.953 18 Si 0.954 3.046 19 H -0.265 1.265 20 H -0.289 1.289 21 H -0.238 1.238 22 C -0.141 4.141 23 C -0.176 4.176 24 C -0.202 4.202 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.412 0.588 31 H 0.353 0.647 32 H 0.345 0.655 33 H 0.060 0.940 34 H 0.040 0.960 35 H 0.026 0.974 36 H 0.029 0.971 37 H 0.266 0.734 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.782 15.831 -7.764 23.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.015 4.015 4 C 0.071 3.929 5 H 0.116 0.884 6 N -0.363 5.363 7 C 0.314 3.686 8 O -0.437 6.437 9 C -0.037 4.037 10 H 0.134 0.866 11 N -0.360 5.360 12 C -0.155 4.155 13 C -0.043 4.043 14 C -0.572 4.572 15 H 0.043 0.957 16 C -0.194 4.194 17 N -0.594 5.594 18 Si 0.777 3.223 19 H -0.190 1.190 20 H -0.215 1.215 21 H -0.161 1.161 22 C -0.160 4.160 23 C -0.214 4.214 24 C -0.239 4.239 25 H 0.106 0.894 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.248 0.752 31 H 0.168 0.832 32 H 0.158 0.842 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.044 0.956 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.141 0.859 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.583 16.689 -8.129 23.606 hybrid contribution 0.458 -1.673 0.613 1.840 sum -14.125 15.015 -7.516 21.942 Atomic orbital electron populations 1.22883 0.79688 1.03448 1.00904 1.87943 1.21067 1.27720 1.95588 1.22802 0.90502 0.85504 1.02703 1.20670 0.93430 0.96657 0.82140 0.88360 1.45935 1.14531 1.50898 1.24974 1.20641 0.81714 0.79878 0.86337 1.90576 1.54460 1.39076 1.59620 1.21450 0.96626 0.90876 0.94720 0.86619 1.58770 1.10313 1.58358 1.08521 1.21993 1.00599 0.94087 0.98816 1.19500 0.96744 0.93603 0.94481 1.21429 1.45351 0.96648 0.93746 0.95677 1.26078 0.94025 0.94746 1.04541 1.70090 1.47650 1.07772 1.33879 0.85603 0.78412 0.80211 0.78078 1.18998 1.21515 1.16132 1.22631 0.95224 0.98027 1.00082 1.22854 1.04710 0.92119 1.01681 1.23306 0.94144 1.03735 1.02667 0.89401 0.93159 0.92888 0.91265 0.89729 0.75170 0.83178 0.84224 0.92152 0.94121 0.95621 0.95286 0.92543 0.85861 0.90171 0.89064 0.88722 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.40 -7.18 9.92 -148.98 -1.48 -8.66 16 3 C 0.06 0.91 5.66 71.98 0.41 1.32 16 4 C 0.18 3.65 2.84 44.99 0.13 3.78 16 5 H 0.10 2.19 7.58 -2.38 -0.02 2.17 16 6 N -0.71 -16.96 3.60 -442.53 -1.59 -18.55 16 7 C 0.53 15.79 5.92 87.66 0.52 16.31 16 8 O -0.56 -19.72 13.28 -3.04 -0.04 -19.77 16 9 C 0.08 2.38 3.21 44.17 0.14 2.53 16 10 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 11 N -0.83 -25.25 8.94 -171.79 -1.54 -26.78 16 12 C -0.12 -4.31 4.78 30.59 0.15 -4.16 16 13 C -0.01 -0.25 3.81 29.84 0.11 -0.14 16 14 C -0.53 -30.31 9.66 25.60 0.25 -30.06 16 15 H 0.02 1.60 7.99 -2.91 -0.02 1.58 16 16 C 0.00 0.16 5.47 84.65 0.46 0.62 16 17 N -0.95 -59.78 13.96 21.45 0.30 -59.49 16 18 Si 0.95 42.87 27.47 68.60 1.88 44.75 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 21 H -0.24 -9.59 6.54 99.48 0.65 -8.94 16 22 C -0.14 -3.21 5.23 -10.79 -0.06 -3.27 16 23 C -0.18 -4.92 9.74 30.62 0.30 -4.62 16 24 C -0.20 -5.64 9.82 30.62 0.30 -5.34 16 25 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.05 0.49 8.14 -2.38 -0.02 0.48 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.41 8.93 8.38 -92.71 -0.78 8.15 16 31 H 0.35 10.27 7.55 -89.69 -0.68 9.59 16 32 H 0.34 11.05 8.58 -89.70 -0.77 10.28 16 33 H 0.06 2.27 7.42 -2.39 -0.02 2.25 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.03 1.08 5.93 -2.39 -0.01 1.07 16 36 H 0.03 1.19 7.57 -2.39 -0.02 1.18 16 37 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 38 H 0.12 2.35 8.11 -2.39 -0.02 2.33 16 39 H 0.08 2.53 5.95 -2.38 -0.01 2.52 16 40 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.09 3.11 5.01 -2.39 -0.01 3.10 16 Total: -1.00 -70.01 336.72 0.25 -69.76 By element: Atomic # 1 Polarization: 41.45 SS G_CDS: -1.24 Total: 40.20 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: 3.96 Total: -21.47 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -2.83 Total: -104.82 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -1.52 Total: -28.43 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.88 Total: 44.75 kcal Total: -70.01 0.25 -69.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424158120.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.015 kcal (2) G-P(sol) polarization free energy of solvation -70.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds