Wall clock time and date at job start Mon Mar 30 2020 00:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 113.99967 * 2 1 4 4 C 1.52999 * 109.47223 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47351 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47038 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.46570 * 179.97438 * 6 5 4 8 8 C 1.34785 * 119.99451 * 179.97438 * 7 6 5 9 9 O 1.21587 * 119.99995 * 5.05234 * 8 7 6 10 10 N 1.34772 * 119.99400 * 185.04937 * 8 7 6 11 11 C 1.46506 * 119.99712 * 175.18347 * 10 8 7 12 12 C 1.52992 * 109.47372 * 185.07542 * 11 10 8 13 13 C 1.50706 * 115.54976 * 64.84028 * 12 11 10 14 14 H 1.07998 * 120.00397 * 266.80507 * 13 12 11 15 15 C 1.37876 * 119.99463 * 86.80074 * 13 12 11 16 16 N 1.31520 * 119.99552 * 178.76749 * 15 13 12 17 17 Si 1.86804 * 120.00281 * 358.77593 * 15 13 12 18 18 H 1.48494 * 109.47406 * 91.37328 * 17 15 13 19 19 H 1.48503 * 109.46840 * 211.37394 * 17 15 13 20 20 H 1.48494 * 109.46821 * 331.36891 * 17 15 13 21 21 C 1.52998 * 117.50087 * 279.17549 * 12 11 10 22 22 C 1.52996 * 117.50285 * 210.51545 * 12 11 10 23 23 H 1.08998 * 109.47256 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47195 * 299.99575 * 1 2 3 25 25 H 1.09005 * 109.47208 * 59.99505 * 1 2 3 26 26 H 1.09006 * 109.46490 * 60.00247 * 3 2 1 27 27 H 1.09000 * 109.47373 * 300.00599 * 3 2 1 28 28 H 1.08998 * 109.47164 * 60.00017 * 4 3 2 29 29 H 1.09003 * 109.46939 * 300.00721 * 4 3 2 30 30 H 1.08998 * 109.46665 * 60.00167 * 5 4 3 31 31 H 1.08997 * 109.46558 * 299.99921 * 5 4 3 32 32 H 1.08996 * 109.46976 * 60.00116 * 6 5 4 33 33 H 1.09000 * 109.46797 * 299.99523 * 6 5 4 34 34 H 0.96996 * 120.00033 * 359.97438 * 7 6 5 35 35 H 0.96999 * 120.00604 * 354.91650 * 10 8 7 36 36 H 1.09002 * 109.46972 * 305.08249 * 11 10 8 37 37 H 1.09002 * 109.46788 * 65.07570 * 11 10 8 38 38 H 0.97005 * 119.99719 * 180.02562 * 16 15 13 39 39 H 1.09004 * 117.49824 * 359.97438 * 21 12 11 40 40 H 1.08996 * 117.50142 * 145.01958 * 21 12 11 41 41 H 1.09002 * 117.49925 * 214.98215 * 22 12 11 42 42 H 1.09004 * 117.49630 * 359.97036 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 0.0000 6 6 5.6830 2.4616 -0.0013 7 7 6.2788 3.8000 -0.0013 8 6 7.6192 3.9408 -0.0018 9 8 8.3334 2.9612 -0.0950 10 7 8.1678 5.1675 0.1009 11 6 9.6218 5.3132 0.2067 12 6 9.9716 6.7846 0.4372 13 6 9.4873 7.3718 1.7380 14 1 8.5366 7.8824 1.7793 15 6 10.2582 7.2569 2.8754 16 7 9.8469 7.7903 4.0050 17 14 11.8867 6.3440 2.8118 18 1 12.9792 7.3013 2.5034 19 1 12.1464 5.7031 4.1260 20 1 11.8289 5.3017 1.7557 21 6 10.0001 7.7040 -0.7854 22 6 11.3090 7.2871 -0.1101 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.6885 1.8463 0.8901 27 1 1.6885 1.8465 -0.8899 28 1 3.8567 0.6440 -0.8908 29 1 3.8574 0.6435 0.8891 30 1 3.8364 3.1227 0.8905 31 1 3.8357 3.1238 -0.8895 32 1 6.0039 1.9214 -0.8919 33 1 6.0052 1.9200 0.8881 34 1 5.7086 4.5847 -0.0009 35 1 7.6004 5.9542 0.1009 36 1 9.9867 4.7175 1.0434 37 1 10.0894 4.9688 -0.7157 38 1 10.3894 7.7098 4.8051 39 1 9.7702 7.2603 -1.7542 40 1 9.6692 8.7334 -0.6489 41 1 11.8386 8.0425 0.4705 42 1 11.9400 6.5691 -0.6341 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430201785.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:59 Heat of formation + Delta-G solvation = -65.986563 kcal Electronic energy + Delta-G solvation = -20253.844726 eV Core-core repulsion = 17041.542265 eV Total energy + Delta-G solvation = -3212.302461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.50573 -38.33415 -37.19769 -35.76201 -33.42495 -32.96283 -32.11352 -28.84925 -26.84544 -26.11735 -24.98942 -23.02090 -21.72732 -21.55002 -20.27003 -19.25863 -17.72267 -16.69682 -16.64395 -16.45166 -15.83259 -15.56296 -15.14672 -14.99172 -14.47397 -14.07668 -13.93079 -13.37138 -13.18358 -12.77926 -12.58862 -12.45458 -12.15609 -12.07813 -11.78700 -11.63716 -11.20931 -11.14210 -10.97499 -10.74368 -10.50730 -10.16602 -10.00950 -9.81060 -9.58531 -9.17415 -8.87664 -8.62916 -8.58335 -8.11857 -6.15048 -4.19310 3.05823 3.30033 3.40414 3.45869 3.50088 3.73979 4.41397 4.61647 4.62412 4.63296 4.90089 4.95580 5.00354 5.06022 5.07694 5.12252 5.14884 5.28567 5.33403 5.51266 5.64028 5.71008 5.80320 6.01606 6.03191 6.04447 6.08561 6.29089 6.42814 6.51117 6.70589 6.75263 6.81280 7.01954 7.09549 7.21543 7.45256 7.69078 8.41743 8.57525 8.84712 9.12274 9.48351 10.96309 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029402 B = 0.002985 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.092997 B = 9378.339142 C = 9655.782293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.061 3.939 4 C -0.116 4.116 5 C -0.128 4.128 6 C 0.142 3.858 7 N -0.754 5.754 8 C 0.700 3.300 9 O -0.604 6.604 10 N -0.720 5.720 11 C 0.175 3.825 12 C -0.016 4.016 13 C -0.488 4.488 14 H 0.077 0.923 15 C 0.079 3.921 16 N -0.897 5.897 17 Si 0.879 3.121 18 H -0.278 1.278 19 H -0.294 1.294 20 H -0.256 1.256 21 C -0.179 4.179 22 C -0.192 4.192 23 H 0.085 0.915 24 H 0.041 0.959 25 H 0.040 0.960 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.395 0.605 35 H 0.399 0.601 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.265 0.735 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.974 -9.213 -9.030 19.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.016 4.016 4 C -0.154 4.154 5 C -0.166 4.166 6 C 0.017 3.983 7 N -0.411 5.411 8 C 0.400 3.600 9 O -0.484 6.484 10 N -0.373 5.373 11 C 0.051 3.949 12 C -0.017 4.017 13 C -0.525 4.525 14 H 0.095 0.905 15 C -0.124 4.124 16 N -0.533 5.533 17 Si 0.706 3.294 18 H -0.204 1.204 19 H -0.221 1.221 20 H -0.180 1.180 21 C -0.216 4.216 22 C -0.230 4.230 23 H 0.103 0.897 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.228 0.772 35 H 0.232 0.768 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.126 -10.258 -8.870 19.582 hybrid contribution 0.142 0.614 0.194 0.659 sum -13.985 -9.644 -8.675 19.075 Atomic orbital electron populations 1.22736 0.81034 1.02745 0.99983 1.87875 1.19713 1.28247 1.95435 1.22565 0.94169 0.84539 1.00288 1.21399 0.92807 0.97160 1.04010 1.21693 0.94758 0.97129 1.03056 1.21046 0.91056 0.83852 1.02312 1.45059 1.05435 1.08732 1.81839 1.16000 0.81751 0.84237 0.78014 1.90869 1.60763 1.38260 1.58510 1.44976 1.08994 1.05927 1.77360 1.21008 0.77833 0.96836 0.99255 1.19640 0.96958 0.90335 0.94810 1.20169 1.06607 1.36146 0.89600 0.90478 1.24969 0.97941 0.94379 0.95095 1.69889 1.38646 1.44391 1.00409 0.86856 0.84070 0.80948 0.77484 1.20435 1.22051 1.17985 1.22839 1.01976 1.00682 0.96112 1.22950 0.91243 1.03919 1.04913 0.89657 0.94044 0.94107 0.93153 0.93258 0.90690 0.90602 0.90918 0.91116 0.91789 0.91784 0.77195 0.76750 0.91840 0.94206 0.92515 0.90878 0.89449 0.89160 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.81 10.70 -35.23 -0.38 -4.19 16 3 C 0.06 0.49 5.94 37.16 0.22 0.71 16 4 C -0.12 -0.96 5.58 -26.73 -0.15 -1.11 16 5 C -0.13 -1.07 5.33 -26.73 -0.14 -1.21 16 6 C 0.14 1.71 5.68 -4.04 -0.02 1.68 16 7 N -0.75 -10.51 5.56 -65.22 -0.36 -10.88 16 8 C 0.70 13.23 8.55 -86.92 -0.74 12.49 16 9 O -0.60 -13.75 16.36 5.29 0.09 -13.67 16 10 N -0.72 -13.67 5.46 -65.22 -0.36 -14.02 16 11 C 0.17 3.77 5.12 -4.04 -0.02 3.75 16 12 C -0.02 -0.36 0.81 -155.66 -0.13 -0.48 16 13 C -0.49 -12.84 9.29 -34.44 -0.32 -13.16 16 14 H 0.08 2.18 8.06 -52.49 -0.42 1.75 16 15 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 16 N -0.90 -26.62 13.96 55.43 0.77 -25.84 16 17 Si 0.88 21.60 24.88 -169.99 -4.23 17.38 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.26 -6.07 5.73 56.52 0.32 -5.75 16 21 C -0.18 -3.41 9.96 -26.70 -0.27 -3.68 16 22 C -0.19 -3.95 7.60 -26.70 -0.20 -4.16 16 23 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.39 4.39 8.49 -40.82 -0.35 4.04 16 35 H 0.40 6.84 8.47 -40.82 -0.35 6.49 16 36 H 0.06 1.53 6.65 -51.93 -0.35 1.19 16 37 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 41 H 0.09 1.94 7.27 -51.93 -0.38 1.56 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 346.56 15.07 5.22 5.22 Total: -1.00 -32.69 346.56 -7.39 -40.08 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -7.39 Total: 7.68 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -0.76 Total: -1.76 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.05 Total: -50.74 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.29 Total: -17.86 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.23 Total: 17.38 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.69 -7.39 -40.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430201785.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.909 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds