Wall clock time and date at job start Mon Mar 30 2020 00:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99891 * 2 1 4 4 H 1.08999 * 110.01649 * 29.94146 * 3 2 1 5 5 C 1.53877 * 110.03273 * 268.54695 * 3 2 1 6 6 C 1.54265 * 106.59605 * 240.66596 * 5 3 2 7 7 C 1.54887 * 104.20056 * 336.39127 * 6 5 3 8 8 C 1.54463 * 110.16169 * 151.19797 * 3 2 1 9 9 H 1.09003 * 110.40626 * 24.16103 * 8 3 2 10 10 N 1.46505 * 110.65957 * 261.45929 * 8 3 2 11 11 C 1.34778 * 119.99736 * 158.78338 * 10 8 3 12 12 O 1.21585 * 120.00450 * 0.02562 * 11 10 8 13 13 N 1.34783 * 119.99668 * 180.02562 * 11 10 8 14 14 C 1.46502 * 119.99797 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46774 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.47078 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.47071 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00368 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99614 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99814 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00195 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.46872 * 90.00031 * 21 19 17 23 23 H 1.48497 * 109.46949 * 209.99867 * 21 19 17 24 24 H 1.48496 * 109.47017 * 329.99803 * 21 19 17 25 25 H 1.08994 * 109.47240 * 299.99912 * 1 2 3 26 26 H 1.08997 * 109.47367 * 60.00221 * 1 2 3 27 27 H 1.08999 * 109.47048 * 179.97438 * 1 2 3 28 28 H 1.08995 * 110.02951 * 121.38551 * 5 3 2 29 29 H 1.08993 * 110.03177 * 359.95089 * 5 3 2 30 30 H 1.09004 * 110.48891 * 217.71100 * 6 5 3 31 31 H 1.09006 * 110.48556 * 95.06998 * 6 5 3 32 32 H 1.09002 * 110.75856 * 156.25785 * 7 6 5 33 33 H 1.09006 * 110.75640 * 279.44771 * 7 6 5 34 34 H 0.96995 * 120.00041 * 338.78438 * 10 8 3 35 35 H 0.96995 * 120.00109 * 359.97438 * 13 11 10 36 36 H 1.08991 * 109.47206 * 299.99621 * 14 13 11 37 37 H 1.09003 * 109.47077 * 59.99942 * 14 13 11 38 38 H 1.09000 * 109.47437 * 299.99799 * 15 14 13 39 39 H 1.09003 * 109.47054 * 60.00310 * 15 14 13 40 40 H 1.09003 * 109.47243 * 300.00524 * 16 15 14 41 41 H 1.09003 * 109.46900 * 60.00247 * 16 15 14 42 42 H 0.96999 * 119.99897 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3512 2.0072 0.5112 5 6 2.2581 1.7721 -1.4452 6 6 3.7771 2.0059 -1.5783 7 6 4.2509 2.2618 -0.1261 8 6 3.3875 1.2750 0.6986 9 1 3.8118 0.2717 0.6588 10 7 3.2733 1.7301 2.0865 11 6 4.2178 1.3918 2.9864 12 8 5.1649 0.7094 2.6464 13 7 4.1125 1.8100 4.2634 14 6 5.1395 1.4428 5.2415 15 6 4.7833 2.0411 6.6039 16 6 5.8555 1.6571 7.6256 17 6 5.5043 2.2458 8.9676 18 1 4.6060 2.8347 9.0807 19 6 6.3299 2.0328 10.0512 20 7 6.0232 2.5462 11.2225 21 14 7.8839 1.0149 9.8555 22 1 9.0141 1.9036 9.4841 23 1 8.1924 0.3311 11.1371 24 1 7.6806 0.0009 8.7899 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7194 2.7003 -1.6354 29 1 1.9359 1.0025 -2.1465 30 1 3.9758 2.8765 -2.2034 31 1 4.2647 1.1214 -1.9884 32 1 5.3106 2.0305 -0.0190 33 1 4.0499 3.2914 0.1701 34 1 2.5179 2.2748 2.3577 35 1 3.3571 2.3547 4.5346 36 1 5.1915 0.3572 5.3235 37 1 6.1055 1.8294 4.9166 38 1 4.7315 3.1268 6.5217 39 1 3.8172 1.6548 6.9290 40 1 5.9068 0.5713 7.7077 41 1 6.8217 2.0430 7.3007 42 1 6.6041 2.3966 11.9847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454466008.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:32 Heat of formation + Delta-G solvation = -97.434744 kcal Electronic energy + Delta-G solvation = -20476.378774 eV Core-core repulsion = 17262.712618 eV Total energy + Delta-G solvation = -3213.666157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.27336 -38.97239 -36.47967 -35.39662 -33.79269 -33.15373 -31.33329 -28.61679 -28.23766 -26.88129 -26.09108 -22.90358 -21.24934 -20.88378 -20.73827 -20.24002 -18.27798 -17.16971 -16.89098 -16.48319 -15.57844 -15.47573 -15.39039 -14.77890 -14.32945 -14.23139 -13.99844 -13.80998 -13.65656 -12.79889 -12.66653 -12.54344 -12.13902 -11.92354 -11.81857 -11.78938 -11.46190 -11.04482 -11.00299 -10.86911 -10.86651 -10.26213 -10.06254 -9.96241 -9.79864 -9.65602 -9.21269 -9.18996 -8.65367 -8.54101 -6.05183 -4.03766 2.70539 3.32970 3.33482 3.40358 3.41090 3.45404 4.11205 4.23699 4.45595 4.46062 4.54928 4.84705 4.94788 4.96799 5.10312 5.17186 5.21485 5.26670 5.29152 5.35770 5.54977 5.56968 5.66134 5.68766 5.72302 5.90719 5.98821 6.06767 6.41087 6.43977 6.49542 6.71815 6.84661 6.85041 7.01696 7.25571 7.38914 7.77291 8.11880 8.51477 8.73120 8.98661 9.57258 11.08083 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.036940 B = 0.002825 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.801418 B = 9908.559606 C =10229.122562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.077 3.923 4 H 0.068 0.932 5 C -0.144 4.144 6 C -0.120 4.120 7 C -0.134 4.134 8 C 0.164 3.836 9 H 0.104 0.896 10 N -0.744 5.744 11 C 0.703 3.297 12 O -0.591 6.591 13 N -0.742 5.742 14 C 0.133 3.867 15 C -0.113 4.113 16 C -0.011 4.011 17 C -0.522 4.522 18 H 0.071 0.929 19 C 0.066 3.934 20 N -0.904 5.904 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.393 0.607 35 H 0.394 0.606 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.019 0.981 41 H 0.015 0.985 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.225 -0.211 -26.502 28.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.019 3.981 4 H 0.086 0.914 5 C -0.182 4.182 6 C -0.158 4.158 7 C -0.173 4.173 8 C 0.058 3.942 9 H 0.122 0.878 10 N -0.399 5.399 11 C 0.403 3.597 12 O -0.469 6.469 13 N -0.396 5.396 14 C 0.010 3.990 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.560 4.560 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.543 5.543 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.188 1.188 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.226 0.774 35 H 0.228 0.772 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.033 0.967 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.154 -1.026 -26.594 28.485 hybrid contribution -0.207 0.317 0.377 0.534 sum -10.361 -0.710 -26.216 28.199 Atomic orbital electron populations 1.22799 0.81027 1.02928 0.99877 1.87994 1.19639 1.27146 1.94941 1.23070 0.94392 0.84981 0.95692 0.91445 1.22609 0.97591 1.01652 0.96335 1.22265 0.94720 1.02076 0.96765 1.22871 1.00775 0.99372 0.94295 1.21641 0.93526 0.99848 0.79159 0.87763 1.45116 1.27239 1.58278 1.09300 1.15971 0.82744 0.80206 0.80815 1.90914 1.33405 1.43273 1.79306 1.45329 1.28847 1.57330 1.08112 1.21510 0.89931 1.00059 0.87539 1.21704 1.01030 1.00181 0.92149 1.19503 0.93989 0.96918 0.94497 1.21102 1.09943 1.33002 0.91906 0.91039 1.25032 0.97938 0.95400 0.95137 1.69915 1.38413 1.45440 1.00520 0.86770 0.83729 0.81143 0.77643 1.20240 1.21396 1.18829 0.93966 0.94084 0.89544 0.91109 0.90398 0.91162 0.90986 0.90233 0.90983 0.77381 0.77235 0.91967 0.91984 0.92188 0.92165 0.96265 0.96706 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.85 101.05 1.10 1.30 16 2 O -0.38 -3.73 10.27 -35.23 -0.36 -4.10 16 3 C 0.08 0.63 3.11 -25.51 -0.08 0.56 16 4 H 0.07 0.45 7.39 -51.93 -0.38 0.06 16 5 C -0.14 -0.96 6.61 -25.61 -0.17 -1.13 16 6 C -0.12 -0.86 6.83 -25.07 -0.17 -1.03 16 7 C -0.13 -1.23 6.56 -24.74 -0.16 -1.40 16 8 C 0.16 1.73 2.90 -66.16 -0.19 1.54 16 9 H 0.10 1.41 7.61 -51.93 -0.40 1.01 16 10 N -0.74 -8.16 5.19 -56.94 -0.30 -8.45 16 11 C 0.70 10.65 8.56 -86.91 -0.74 9.91 16 12 O -0.59 -11.48 16.06 5.29 0.08 -11.40 16 13 N -0.74 -10.51 5.56 -65.22 -0.36 -10.88 16 14 C 0.13 2.27 5.67 -4.04 -0.02 2.25 16 15 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 16 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 17 C -0.52 -14.77 9.66 -34.44 -0.33 -15.11 16 18 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 21 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 25 H 0.04 0.25 8.10 -51.93 -0.42 -0.17 16 26 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.53 7.95 -51.93 -0.41 0.12 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.39 3.12 8.35 -40.82 -0.34 2.77 16 35 H 0.39 4.42 8.49 -40.82 -0.35 4.08 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 41 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 343.30 15.07 5.17 5.17 Total: -1.00 -34.18 343.30 -8.09 -42.27 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.30 Total: 1.19 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -1.13 Total: -3.91 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.12 Total: -46.46 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.28 Total: -15.49 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.18 -8.09 -42.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454466008.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.164 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds