Wall clock time and date at job start Mon Mar 30 2020 00:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00341 * 2 1 4 4 C 1.53001 * 110.01839 * 56.56512 * 3 2 1 5 5 N 1.46494 * 109.47093 * 59.95000 * 4 3 2 6 6 C 1.34776 * 120.00255 * 174.97446 * 5 4 3 7 7 O 1.21583 * 119.99687 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99990 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99439 * 179.72316 * 8 6 5 10 10 C 1.53007 * 109.46678 * 180.02562 * 9 8 6 11 11 C 1.50707 * 109.46954 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00295 * 0.02562 * 11 10 9 13 13 C 1.37871 * 119.99843 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00369 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00061 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47386 * 89.99969 * 15 13 11 17 17 H 1.48501 * 109.47193 * 210.00017 * 15 13 11 18 18 H 1.48505 * 109.47124 * 330.00365 * 15 13 11 19 19 C 1.54267 * 110.03412 * 177.96123 * 3 2 1 20 20 C 1.54961 * 104.16185 * 95.75069 * 19 3 2 21 21 C 1.54894 * 102.77541 * 37.88797 * 20 19 3 22 22 C 1.53876 * 110.02845 * 295.17595 * 3 2 1 23 23 H 1.08998 * 109.47334 * 294.05456 * 1 2 3 24 24 H 1.09002 * 109.46917 * 54.04706 * 1 2 3 25 25 H 1.08998 * 109.47339 * 174.04769 * 1 2 3 26 26 H 1.09006 * 109.47148 * 299.95064 * 4 3 2 27 27 H 1.08997 * 109.47108 * 179.97438 * 4 3 2 28 28 H 0.97003 * 120.00029 * 354.97068 * 5 4 3 29 29 H 0.96996 * 119.99730 * 0.02562 * 8 6 5 30 30 H 1.08996 * 109.47558 * 300.00400 * 9 8 6 31 31 H 1.08995 * 109.47595 * 60.00565 * 9 8 6 32 32 H 1.08991 * 109.47232 * 299.99809 * 10 9 8 33 33 H 1.08995 * 109.47442 * 60.00381 * 10 9 8 34 34 H 0.97000 * 120.00583 * 180.02562 * 14 13 11 35 35 H 1.09001 * 110.48521 * 214.39854 * 19 3 2 36 36 H 1.09004 * 110.48347 * 337.04181 * 19 3 2 37 37 H 1.09002 * 110.72311 * 279.57628 * 20 19 3 38 38 H 1.09004 * 110.76443 * 156.21742 * 20 19 3 39 39 H 1.09001 * 110.48162 * 203.40450 * 21 20 19 40 40 H 1.09003 * 110.48577 * 80.76373 * 21 20 19 41 41 H 1.08996 * 110.03405 * 359.95044 * 22 3 2 42 42 H 1.09000 * 110.03168 * 121.38250 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4997 2.1061 1.1997 5 7 1.8647 1.4152 2.4388 6 6 1.6068 1.9884 3.6311 7 8 1.0708 3.0787 3.6781 8 7 1.9421 1.3524 4.7712 9 6 1.6672 1.9783 6.0669 10 6 2.1428 1.0548 7.1903 11 6 1.8594 1.6982 8.5233 12 1 1.3871 2.6685 8.5651 13 6 2.2023 1.0477 9.6896 14 7 2.7771 -0.1341 9.6388 15 14 1.8505 1.8449 11.3419 16 1 0.4990 1.4430 11.8077 17 1 2.8665 1.4034 12.3308 18 1 1.9064 3.3222 11.2006 19 6 3.5484 1.1990 0.0516 20 6 3.9854 1.3014 -1.4316 21 6 3.0020 2.3508 -2.0068 22 6 1.6628 2.0370 -1.3084 23 1 -0.3634 0.4189 0.9384 24 1 -0.3633 0.6034 -0.8319 25 1 -0.3634 -1.0221 -0.1066 26 1 0.4151 2.1975 1.1405 27 1 1.9487 3.0993 1.1912 28 1 2.2919 0.5451 2.4013 29 1 2.3693 0.4825 4.7335 30 1 2.1958 2.9293 6.1305 31 1 0.5957 2.1508 6.1671 32 1 1.6144 0.1036 7.1269 33 1 3.2144 0.8826 7.0901 34 1 3.0180 -0.5920 10.4593 35 1 3.9685 2.0215 0.6305 36 1 3.8505 0.2406 0.4738 37 1 3.8657 0.3426 -1.9361 38 1 5.0142 1.6536 -1.5079 39 1 2.9063 2.2324 -3.0862 40 1 3.3336 3.3595 -1.7606 41 1 1.0516 1.3960 -1.9436 42 1 1.1305 2.9625 -1.0886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454790239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:21 Heat of formation + Delta-G solvation = -98.313950 kcal Electronic energy + Delta-G solvation = -20945.139077 eV Core-core repulsion = 17731.434796 eV Total energy + Delta-G solvation = -3213.704282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.35384 -39.06539 -35.98290 -34.96179 -34.09578 -32.77963 -30.06505 -29.29562 -28.81763 -26.83739 -25.07562 -23.97189 -21.28448 -20.92204 -20.41198 -19.94149 -18.01522 -17.09816 -16.34468 -16.21341 -15.34867 -15.28689 -15.12625 -14.85891 -14.50193 -14.41028 -13.83248 -13.47642 -13.40004 -13.29186 -12.59826 -12.26549 -12.11611 -11.81383 -11.64425 -11.39777 -11.33993 -11.16132 -11.01372 -10.87550 -10.77668 -10.61185 -10.28755 -9.94162 -9.78789 -9.51741 -9.23469 -8.97882 -8.45806 -8.20369 -6.06960 -4.09545 3.02629 3.31188 3.37220 3.41799 3.55566 3.64116 4.19351 4.21686 4.42001 4.44966 4.77500 4.80741 5.01063 5.09689 5.12013 5.19782 5.27557 5.30084 5.37933 5.45362 5.49033 5.58018 5.66197 5.68026 5.72186 5.77661 5.92639 6.03472 6.33291 6.43073 6.61910 6.80934 6.99159 7.04675 7.29891 7.60267 7.66525 7.92441 8.28873 8.48701 8.95551 9.04430 9.55081 11.04734 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.038901 B = 0.002987 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.609186 B = 9371.048028 C = 9395.657485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.373 6.373 3 C 0.102 3.898 4 C 0.120 3.880 5 N -0.747 5.747 6 C 0.698 3.302 7 O -0.601 6.601 8 N -0.738 5.738 9 C 0.140 3.860 10 C 0.013 3.987 11 C -0.520 4.520 12 H 0.059 0.941 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 C -0.111 4.111 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.146 4.146 23 H 0.047 0.953 24 H 0.043 0.957 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.398 0.602 29 H 0.393 0.607 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.262 0.738 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.123 0.129 -24.379 24.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.292 6.292 3 C 0.062 3.938 4 C -0.005 4.005 5 N -0.404 5.404 6 C 0.398 3.602 7 O -0.481 6.481 8 N -0.392 5.392 9 C 0.018 3.982 10 C -0.025 4.025 11 C -0.559 4.559 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.724 3.276 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.149 4.149 20 C -0.161 4.161 21 C -0.159 4.159 22 C -0.184 4.184 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.103 0.897 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.232 0.768 29 H 0.226 0.774 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.209 0.857 -24.180 24.196 hybrid contribution -0.081 -0.280 0.941 0.985 sum -0.290 0.577 -23.239 23.248 Atomic orbital electron populations 1.22800 0.81255 1.02643 1.00559 1.87973 1.19711 1.26689 1.94839 1.22495 0.94574 0.83485 0.93280 1.21756 1.00199 0.96105 0.82442 1.44976 1.67633 1.23644 1.04176 1.16075 0.79549 0.84137 0.80481 1.90879 1.49526 1.21042 1.86607 1.45522 1.65115 1.22987 1.05549 1.21577 0.99941 0.97050 0.79661 1.19324 0.96962 0.94695 0.91482 1.21060 1.40042 1.04401 0.90400 0.92233 1.24995 0.94987 0.94909 0.99431 1.69957 1.41481 1.13878 1.28051 0.86512 0.78002 0.79742 0.83295 1.20578 1.21188 1.19720 1.22401 0.91490 1.03420 0.97557 1.22509 0.98922 0.99361 0.95259 1.22314 0.94505 0.99392 0.99730 1.22728 0.98769 1.00873 0.96067 0.93401 0.93846 0.89673 0.91880 0.90621 0.76808 0.77369 0.92851 0.92847 0.95979 0.95958 0.92875 0.89806 0.90168 0.91128 0.91239 0.91456 0.91301 0.90432 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.11 101.05 1.02 1.23 16 2 O -0.37 -3.82 10.00 -35.23 -0.35 -4.18 16 3 C 0.10 0.95 0.64 -89.50 -0.06 0.89 16 4 C 0.12 1.41 3.75 -4.04 -0.02 1.40 16 5 N -0.75 -10.05 5.21 -65.23 -0.34 -10.39 16 6 C 0.70 12.63 8.57 -86.91 -0.74 11.89 16 7 O -0.60 -13.26 16.34 5.29 0.09 -13.17 16 8 N -0.74 -13.52 5.56 -65.23 -0.36 -13.88 16 9 C 0.14 3.10 5.61 -4.04 -0.02 3.07 16 10 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 11 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 12 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 15 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 C -0.11 -0.96 5.57 -25.03 -0.14 -1.10 16 20 C -0.12 -0.89 6.91 -24.70 -0.17 -1.06 16 21 C -0.12 -0.83 6.83 -25.07 -0.17 -1.01 16 22 C -0.15 -1.13 5.60 -25.61 -0.14 -1.28 16 23 H 0.05 0.48 6.75 -51.93 -0.35 0.13 16 24 H 0.04 0.32 6.56 -51.93 -0.34 -0.02 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.78 6.69 -51.93 -0.35 0.43 16 27 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 28 H 0.40 4.64 8.06 -40.82 -0.33 4.31 16 29 H 0.39 6.26 8.49 -40.82 -0.35 5.91 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.08 0.75 7.85 -51.93 -0.41 0.35 16 36 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.58 6.79 -51.93 -0.35 0.23 16 42 H 0.07 0.55 7.67 -51.93 -0.40 0.15 16 LS Contribution 338.91 15.07 5.11 5.11 Total: -1.00 -32.50 338.91 -8.20 -40.70 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.06 Total: 4.07 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -1.00 Total: 0.83 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.03 Total: -49.91 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.27 Total: -17.35 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.50 -8.20 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454790239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.614 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds