Wall clock time and date at job start Mon Mar 30 2020 01:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.47234 * 2 1 4 4 C 1.46956 * 110.99686 * 293.79809 * 3 2 1 5 5 C 1.53055 * 109.36200 * 176.81285 * 4 3 2 6 6 H 1.08998 * 109.48720 * 298.43563 * 5 4 3 7 7 C 1.52997 * 109.48849 * 178.36910 * 5 4 3 8 8 N 1.46957 * 109.36585 * 58.39994 * 5 4 3 9 9 C 1.46900 * 110.99857 * 176.80935 * 8 5 4 10 10 C 1.53005 * 109.46902 * 188.98221 * 9 8 5 11 11 O 1.42905 * 109.47033 * 63.37894 * 10 9 8 12 12 C 1.42890 * 113.99840 * 175.20788 * 11 10 9 13 13 C 1.50702 * 109.47140 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99801 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00130 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00247 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00172 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46923 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47303 * 119.99448 * 17 15 13 20 20 H 1.48499 * 109.47305 * 240.00299 * 17 15 13 21 21 C 1.46959 * 110.87887 * 300.68047 * 8 5 4 22 22 H 1.09002 * 109.48657 * 179.28818 * 21 8 5 23 23 C 1.52993 * 109.50807 * 299.34019 * 21 8 5 24 24 C 1.46957 * 111.00076 * 169.99820 * 3 2 1 25 25 H 1.08999 * 109.46750 * 60.00202 * 1 2 3 26 26 H 1.08997 * 109.46962 * 300.00198 * 1 2 3 27 27 H 1.09004 * 109.47249 * 179.97438 * 1 2 3 28 28 H 1.09011 * 109.47109 * 120.00058 * 2 1 3 29 29 H 1.09000 * 109.47475 * 239.99260 * 2 1 3 30 30 H 1.08998 * 109.48901 * 296.77401 * 4 3 2 31 31 H 1.08996 * 109.49242 * 56.84710 * 4 3 2 32 32 H 1.09007 * 109.46988 * 292.70097 * 7 5 4 33 33 H 1.09002 * 109.47323 * 52.69804 * 7 5 4 34 34 H 1.09000 * 109.47226 * 172.70135 * 7 5 4 35 35 H 1.08991 * 109.47547 * 308.98355 * 9 8 5 36 36 H 1.08999 * 109.47011 * 68.98928 * 9 8 5 37 37 H 1.08999 * 109.46652 * 183.37660 * 10 9 8 38 38 H 1.09001 * 109.47340 * 303.37494 * 10 9 8 39 39 H 1.09000 * 109.47123 * 299.99677 * 12 11 10 40 40 H 1.08999 * 109.47521 * 59.99528 * 12 11 10 41 41 H 0.97001 * 120.00024 * 180.02562 * 16 15 13 42 42 H 1.08995 * 109.47509 * 179.90335 * 23 21 8 43 43 H 1.09009 * 109.47346 * 299.90728 * 23 21 8 44 44 H 1.09003 * 109.46972 * 59.90451 * 23 21 8 45 45 H 1.08998 * 109.48947 * 303.15454 * 24 3 2 46 46 H 1.09007 * 109.48824 * 63.22091 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6732 2.0660 -1.2553 5 6 2.1296 3.5251 -1.1837 6 1 1.6108 4.0288 -0.3681 7 6 1.8069 4.2263 -2.5047 8 7 3.5790 3.5713 -0.9454 9 6 4.0687 4.9563 -0.9455 10 6 5.5985 4.9563 -0.9199 11 8 6.0949 4.3454 -2.1126 12 6 7.5174 4.3908 -2.2401 13 6 7.9281 3.7212 -3.5262 14 1 7.1778 3.3025 -4.1805 15 6 9.2616 3.6432 -3.8675 16 7 10.1753 4.1535 -3.0710 17 14 9.7706 2.8138 -5.4621 18 1 8.5622 2.3262 -6.1740 19 1 10.4909 3.7892 -6.3194 20 1 10.6634 1.6662 -5.1601 21 6 3.9254 2.8902 0.3099 22 1 5.0047 2.9269 0.4577 23 6 3.2262 3.5869 1.4789 24 6 3.4691 1.4311 0.2383 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 2.1717 1.5696 -2.0879 31 1 0.5940 2.0294 -1.4031 32 1 2.4246 3.8070 -3.2990 33 1 0.7544 4.0787 -2.7468 34 1 2.0118 5.2927 -2.4096 35 1 3.7204 5.4648 -1.8444 36 1 3.6906 5.4754 -0.0648 37 1 5.9607 5.9826 -0.8594 38 1 5.9474 4.3962 -0.0523 39 1 7.8484 5.4293 -2.2489 40 1 7.9745 3.8709 -1.3981 41 1 11.1135 4.0989 -3.3113 42 1 3.4821 3.0803 2.4094 43 1 3.5513 4.6261 1.5296 44 1 2.1469 3.5507 1.3304 45 1 3.6990 0.9316 1.1794 46 1 3.9879 0.9274 -0.5774 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459468315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:43 Heat of formation + Delta-G solvation = -37.166790 kcal Electronic energy + Delta-G solvation = -22215.722003 eV Core-core repulsion = 19140.502355 eV Total energy + Delta-G solvation = -3075.219648 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.00067 -36.95935 -35.74642 -33.20556 -32.70604 -31.45834 -29.33295 -27.65358 -26.85798 -26.55932 -24.84621 -22.27596 -22.07173 -21.66370 -20.81160 -18.42819 -16.44124 -16.33347 -15.95034 -15.47271 -15.31655 -14.94290 -14.59886 -14.20772 -14.08590 -13.81569 -13.67796 -13.03113 -12.81815 -12.55292 -12.22787 -12.12185 -12.05972 -11.83744 -11.75625 -11.50840 -11.36461 -11.24231 -11.06173 -10.85174 -10.77547 -10.73113 -10.57687 -10.23380 -10.12129 -9.86429 -9.01054 -8.73582 -8.34694 -8.07945 -7.88311 -6.05828 -4.06412 3.32034 3.38336 3.45429 3.85852 4.03242 4.40028 4.81637 4.83512 4.89495 5.05938 5.15330 5.22969 5.30747 5.31243 5.35572 5.38165 5.44535 5.57061 5.60373 5.64371 5.70995 5.72892 5.77116 5.81264 5.85510 5.90290 5.93744 6.08346 6.09965 6.10486 6.18622 6.23454 6.32838 6.42479 6.50826 7.00906 7.03417 7.17522 7.40744 7.42022 7.50400 7.86671 8.23454 8.69605 9.09377 9.58436 11.05957 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.021235 B = 0.004286 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.254871 B = 6531.644928 C = 6907.141857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.061 3.939 5 C 0.082 3.918 6 H 0.047 0.953 7 C -0.147 4.147 8 N -0.512 5.512 9 C 0.054 3.946 10 C 0.067 3.933 11 O -0.378 6.378 12 C 0.194 3.806 13 C -0.508 4.508 14 H 0.067 0.933 15 C 0.055 3.945 16 N -0.901 5.901 17 Si 0.906 3.094 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.080 3.920 22 H 0.091 0.909 23 C -0.177 4.177 24 C 0.063 3.937 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.037 0.963 38 H 0.034 0.966 39 H 0.001 0.999 40 H 0.002 0.998 41 H 0.262 0.738 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.790 -3.536 8.232 20.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 N -0.263 5.263 4 C -0.067 4.067 5 C -0.027 4.027 6 H 0.065 0.935 7 C -0.205 4.205 8 N -0.237 5.237 9 C -0.073 4.073 10 C -0.011 4.011 11 O -0.297 6.297 12 C 0.119 3.881 13 C -0.546 4.546 14 H 0.085 0.915 15 C -0.146 4.146 16 N -0.540 5.540 17 Si 0.733 3.267 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.029 4.029 22 H 0.109 0.891 23 C -0.236 4.236 24 C -0.065 4.065 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.712 -3.611 8.090 20.704 hybrid contribution 0.744 -0.249 -0.493 0.926 sum -17.968 -3.860 7.598 19.887 Atomic orbital electron populations 1.21786 0.95102 1.01275 1.02322 1.22043 0.95859 0.89175 1.00744 1.62207 1.14240 1.15265 1.34628 1.22225 0.99972 0.93922 0.90561 1.21631 0.88645 0.95186 0.97240 0.93536 1.21875 1.00897 1.00361 0.97379 1.62299 1.12207 1.15952 1.33199 1.22246 0.95056 0.89083 1.00911 1.22253 0.92602 0.96177 0.90074 1.87958 1.24806 1.78828 1.38152 1.20168 0.75383 0.95630 0.96919 1.21105 0.92083 1.36552 1.04896 0.91526 1.24944 0.96134 0.95850 0.97659 1.69979 1.00951 1.45882 1.37211 0.86314 0.78551 0.79013 0.82817 1.19495 1.20903 1.20919 1.21776 1.00215 0.92954 0.87925 0.89100 1.22336 1.02156 1.00189 0.98889 1.22144 0.87054 0.96383 1.00897 0.92713 0.92044 0.92539 0.91001 0.94881 0.93812 0.90610 0.91131 0.92605 0.92373 0.89814 0.94093 0.94466 0.94783 0.98075 0.98056 0.92830 0.92592 0.93131 0.91409 0.90683 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.85 37.16 0.37 -0.87 16 2 C 0.05 0.50 5.68 -3.83 -0.02 0.48 16 3 N -0.54 -6.37 4.03 -234.46 -0.94 -7.32 16 4 C 0.06 0.75 4.69 -3.76 -0.02 0.73 16 5 C 0.08 1.05 2.18 -67.65 -0.15 0.91 16 6 H 0.05 0.59 6.34 -51.93 -0.33 0.26 16 7 C -0.15 -1.78 8.64 37.16 0.32 -1.46 16 8 N -0.51 -7.88 4.41 -218.57 -0.96 -8.84 16 9 C 0.05 0.85 4.90 -3.82 -0.02 0.83 16 10 C 0.07 1.28 5.96 37.16 0.22 1.50 16 11 O -0.38 -9.36 10.25 -35.23 -0.36 -9.73 16 12 C 0.19 5.44 5.69 36.01 0.20 5.64 16 13 C -0.51 -15.29 9.43 -34.44 -0.32 -15.62 16 14 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 17 Si 0.91 22.24 29.54 -169.99 -5.02 17.22 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 21 C 0.08 1.13 2.76 -67.66 -0.19 0.95 16 22 H 0.09 1.44 6.24 -51.93 -0.32 1.12 16 23 C -0.18 -2.13 8.38 37.15 0.31 -1.82 16 24 C 0.06 0.83 5.04 -3.77 -0.02 0.81 16 25 H 0.05 0.46 6.49 -51.93 -0.34 0.12 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.67 8.03 -51.92 -0.42 0.26 16 29 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.80 6.34 -51.93 -0.33 0.47 16 32 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.68 6.60 -51.93 -0.34 0.34 16 35 H 0.08 1.31 5.94 -51.93 -0.31 1.00 16 36 H 0.04 0.55 6.15 -51.93 -0.32 0.23 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.03 0.64 6.31 -51.93 -0.33 0.31 16 39 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 40 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.61 6.38 -51.92 -0.33 0.27 16 44 H 0.07 0.83 5.94 -51.93 -0.31 0.52 16 45 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 345.95 15.07 5.21 5.21 Total: -1.00 -31.49 345.95 -9.04 -40.52 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -8.29 Total: -4.00 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 0.59 Total: -6.41 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: -1.17 Total: -42.82 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -0.36 Total: -9.73 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.49 -9.04 -40.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459468315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.356 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds