Wall clock time and date at job start Mon Mar 30 2020 01:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09001 * 110.82175 * 2 1 4 4 C 1.54886 * 110.75999 * 236.65884 * 2 1 3 5 5 C 1.54267 * 104.19846 * 203.74672 * 4 2 1 6 6 C 1.53870 * 106.59671 * 23.60730 * 5 4 2 7 7 C 1.54261 * 106.60154 * 0.02562 * 6 5 4 8 8 H 1.08999 * 110.48543 * 95.20127 * 7 6 5 9 9 N 1.46898 * 110.48780 * 217.71056 * 7 6 5 10 10 C 1.46898 * 110.99965 * 273.54825 * 9 7 6 11 11 C 1.53001 * 109.47067 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.47511 * 60.00187 * 11 10 9 13 13 O 1.42900 * 109.47358 * 299.99569 * 11 10 9 14 14 C 1.53002 * 109.46962 * 179.97438 * 11 10 9 15 15 N 1.46907 * 109.46860 * 185.00097 * 14 11 10 16 16 C 1.46891 * 111.00178 * 66.04708 * 15 14 11 17 17 C 1.46904 * 110.99521 * 190.00222 * 15 14 11 18 18 C 1.50703 * 109.46874 * 169.99980 * 17 15 14 19 19 H 1.08006 * 120.00159 * 359.97438 * 18 17 15 20 20 C 1.37877 * 120.00120 * 180.02562 * 18 17 15 21 21 N 1.31514 * 120.00089 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99938 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99556 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99737 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99730 * 22 20 18 26 26 H 1.09000 * 109.47504 * 296.67232 * 1 2 3 27 27 H 1.09005 * 109.47312 * 56.66741 * 1 2 3 28 28 H 1.08993 * 109.47498 * 176.66400 * 1 2 3 29 29 H 1.09004 * 110.48793 * 85.06423 * 4 2 1 30 30 H 1.09000 * 110.60027 * 322.47916 * 4 2 1 31 31 H 1.09002 * 110.03146 * 264.32606 * 5 4 2 32 32 H 1.08996 * 110.03245 * 142.89378 * 5 4 2 33 33 H 1.09003 * 110.03270 * 240.71351 * 6 5 4 34 34 H 1.09003 * 110.07332 * 119.31247 * 6 5 4 35 35 H 1.00903 * 111.00455 * 149.58854 * 9 7 6 36 36 H 1.08996 * 109.47490 * 59.99701 * 10 9 7 37 37 H 1.09006 * 109.46967 * 299.99603 * 10 9 7 38 38 H 0.96701 * 113.99919 * 300.00594 * 13 11 10 39 39 H 1.08999 * 109.47185 * 65.00220 * 14 11 10 40 40 H 1.08999 * 109.47265 * 304.99987 * 14 11 10 41 41 H 1.09001 * 109.47072 * 183.95096 * 16 15 14 42 42 H 1.08996 * 109.47472 * 303.95498 * 16 15 14 43 43 H 1.09003 * 109.47298 * 63.95264 * 16 15 14 44 44 H 1.09003 * 109.47066 * 50.00257 * 17 15 14 45 45 H 1.08996 * 109.47319 * 289.99729 * 17 15 14 46 46 H 0.96998 * 119.99255 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9174 1.0188 0.0000 4 6 2.0789 -0.7960 -1.2099 5 6 3.4931 -1.2269 -0.7691 6 6 3.4930 -1.2268 0.7696 7 6 2.0786 -0.7964 1.2102 8 1 1.4582 -1.6705 1.4079 9 7 2.1497 0.0618 2.4002 10 6 2.1734 -0.7429 3.6290 11 6 2.2481 0.1838 4.8441 12 1 1.3770 0.8390 4.8556 13 8 3.4369 0.9733 4.7688 14 6 2.2722 -0.6543 6.1239 15 7 2.2231 0.2347 7.2924 16 6 0.9376 0.9421 7.3621 17 6 2.4819 -0.5102 8.5318 18 6 2.6672 0.4589 9.6709 19 1 2.5999 1.5219 9.4920 20 6 2.9238 -0.0114 10.9414 21 7 3.0063 -1.3058 11.1592 22 14 3.1528 1.1898 12.3534 23 1 4.5883 1.5529 12.4667 24 1 2.7007 0.5581 13.6191 25 1 2.3514 2.4135 12.0973 26 1 -0.3634 0.4613 0.9183 27 1 -0.3634 0.5647 -0.8586 28 1 -0.3634 -1.0258 -0.0598 29 1 2.1320 -0.1593 -2.0931 30 1 1.4581 -1.6699 -1.4076 31 1 4.2326 -0.5185 -1.1425 32 1 3.7119 -2.2273 -1.1424 33 1 4.2325 -0.5184 1.1429 34 1 3.7122 -2.2268 1.1438 35 1 1.3875 0.7229 2.4155 36 1 3.0447 -1.3977 3.6178 37 1 1.2668 -1.3453 3.6862 38 1 4.2531 0.4548 4.7547 39 1 3.1881 -1.2444 6.1546 40 1 1.4098 -1.3208 6.1380 41 1 0.9542 1.6448 8.1952 42 1 0.7708 1.4853 6.4319 43 1 0.1337 0.2212 7.5109 44 1 3.3849 -1.1092 8.4138 45 1 1.6370 -1.1648 8.7455 46 1 2.8870 -1.9294 10.4260 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564845415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:18 Heat of formation + Delta-G solvation = -92.308842 kcal Electronic energy + Delta-G solvation = -21219.562598 eV Core-core repulsion = 18141.951811 eV Total energy + Delta-G solvation = -3077.610786 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.10913 -39.23847 -37.30057 -35.02089 -34.84441 -32.22670 -31.11790 -28.89372 -28.34389 -26.96391 -25.75436 -24.63389 -22.98927 -22.02613 -20.97688 -20.71059 -18.93628 -17.64743 -17.37681 -16.94825 -16.32241 -16.01269 -15.81949 -15.61288 -15.34451 -15.15676 -14.76802 -14.70416 -14.27973 -13.98598 -13.73614 -13.32129 -13.28119 -13.06842 -12.84073 -12.61687 -12.56417 -12.46764 -12.33001 -12.04854 -11.92529 -11.91700 -11.67939 -11.57647 -11.39054 -11.25197 -11.01476 -10.61599 -10.55448 -9.36509 -9.09954 -8.70094 -6.40531 1.52787 1.61922 1.80315 2.54239 2.84672 3.12492 3.33055 3.57972 3.65705 3.72292 3.85108 3.96832 4.08673 4.22836 4.30551 4.38050 4.39895 4.47742 4.52171 4.55655 4.59016 4.61507 4.68863 4.70025 4.74470 4.82762 4.91642 4.96882 4.98731 5.05745 5.10466 5.15460 5.22680 5.26166 5.28659 5.37503 5.52203 5.75119 5.95647 6.11029 6.34039 6.39676 6.42867 6.62141 6.96307 7.39616 8.68800 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.044427 B = 0.002923 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.099448 B = 9575.691799 C = 9764.194488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.078 0.922 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.117 4.117 7 C 0.084 3.916 8 H 0.044 0.956 9 N -0.675 5.675 10 C 0.040 3.960 11 C 0.130 3.870 12 H 0.091 0.909 13 O -0.552 6.552 14 C 0.023 3.977 15 N -0.536 5.536 16 C 0.041 3.959 17 C 0.193 3.807 18 C -0.599 4.599 19 H 0.053 0.947 20 C -0.038 4.038 21 N -0.938 5.938 22 Si 1.124 2.876 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.270 1.270 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.343 0.657 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.377 0.623 39 H 0.067 0.933 40 H 0.032 0.968 41 H 0.054 0.946 42 H 0.080 0.920 43 H 0.010 0.990 44 H -0.001 1.001 45 H -0.044 1.044 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.883 0.499 -25.395 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.096 0.904 4 C -0.153 4.153 5 C -0.160 4.160 6 C -0.156 4.156 7 C -0.025 4.025 8 H 0.062 0.938 9 N -0.307 5.307 10 C -0.090 4.090 11 C 0.070 3.930 12 H 0.109 0.891 13 O -0.358 6.358 14 C -0.106 4.106 15 N -0.259 5.259 16 C -0.107 4.107 17 C 0.067 3.933 18 C -0.637 4.637 19 H 0.071 0.929 20 C -0.235 4.235 21 N -0.576 5.576 22 Si 0.944 3.056 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.195 1.195 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.162 0.838 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.225 0.775 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.029 0.971 44 H 0.017 0.983 45 H -0.026 1.026 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.963 1.497 -23.873 24.103 hybrid contribution -1.418 -1.993 -1.161 2.707 sum -4.381 -0.495 -25.034 25.419 Atomic orbital electron populations 1.21787 0.94367 1.01993 1.02069 1.22220 0.95640 0.99483 0.94046 0.90351 1.22363 0.95853 0.99768 0.97308 1.22087 0.97558 1.01684 0.94637 1.22170 0.96798 1.00579 0.96023 1.22512 0.96232 0.94215 0.89583 0.93781 1.60422 1.51570 1.18048 1.00642 1.22529 1.01320 0.95283 0.89914 1.21738 0.89138 0.91986 0.90125 0.89078 1.86555 1.15760 1.36992 1.96450 1.22871 1.00730 0.94863 0.92133 1.61858 1.32520 1.29250 1.02292 1.22226 0.88535 0.97913 1.01999 1.19566 0.92618 0.92722 0.88419 1.22315 1.52214 0.94467 0.94681 0.92891 1.27437 0.93036 0.99821 1.03193 1.70906 1.48795 1.02636 1.35266 0.82850 0.77725 0.72790 0.72187 1.19799 1.20682 1.19490 0.93043 0.91521 0.92564 0.90727 0.91152 0.91659 0.91318 0.91847 0.92635 0.83849 0.90615 0.94092 0.77500 0.91460 0.94969 0.92744 0.90147 0.97142 0.98279 1.02618 0.93769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.26 71.98 0.67 -1.15 16 2 C -0.10 -1.37 2.90 -9.50 -0.03 -1.40 16 3 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.12 -1.42 6.27 31.67 0.20 -1.22 16 5 C -0.12 -1.68 6.80 31.32 0.21 -1.46 16 6 C -0.12 -2.03 6.45 31.32 0.20 -1.83 16 7 C 0.08 1.46 2.62 46.00 0.12 1.58 16 8 H 0.04 0.79 7.78 -2.39 -0.02 0.78 16 9 N -0.68 -13.69 6.16 -486.00 -2.99 -16.68 16 10 C 0.04 0.88 5.19 86.30 0.45 1.32 16 11 C 0.13 3.64 3.13 30.60 0.10 3.73 16 12 H 0.09 2.57 6.26 -2.38 -0.01 2.56 16 13 O -0.55 -17.32 13.15 -148.98 -1.96 -19.28 16 14 C 0.02 0.80 4.60 86.30 0.40 1.20 16 15 N -0.54 -23.81 4.70 -927.04 -4.36 -28.17 16 16 C 0.04 1.66 9.17 127.69 1.17 2.83 16 17 C 0.19 10.50 4.03 85.56 0.34 10.85 16 18 C -0.60 -35.22 8.51 25.60 0.22 -35.00 16 19 H 0.05 3.12 7.10 -2.91 -0.02 3.10 16 20 C -0.04 -2.23 5.46 84.65 0.46 -1.77 16 21 N -0.94 -58.87 13.65 21.45 0.29 -58.58 16 22 Si 1.12 51.45 29.90 68.60 2.05 53.50 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 H 0.05 0.67 7.84 -2.39 -0.02 0.66 16 27 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.06 0.68 8.10 -2.39 -0.02 0.67 16 29 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.07 0.80 8.02 -2.39 -0.02 0.78 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 1.29 8.04 -2.39 -0.02 1.27 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.34 6.69 8.14 -89.69 -0.73 5.96 16 36 H 0.08 1.66 8.12 -2.39 -0.02 1.64 16 37 H 0.04 0.86 8.08 -2.38 -0.02 0.84 16 38 H 0.38 10.06 9.05 -74.06 -0.67 9.39 16 39 H 0.07 2.35 7.93 -2.39 -0.02 2.33 16 40 H 0.03 1.08 8.12 -2.39 -0.02 1.07 16 41 H 0.05 2.39 6.86 -2.39 -0.02 2.37 16 42 H 0.08 2.68 6.21 -2.39 -0.01 2.66 16 43 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.00 -0.05 7.80 -2.39 -0.02 -0.06 16 45 H -0.04 -2.52 7.99 -2.39 -0.02 -2.54 16 46 H 0.25 16.07 7.22 -92.71 -0.67 15.40 16 Total: -1.00 -67.89 358.93 -2.82 -70.71 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -0.36 Total: 20.83 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: 4.51 Total: -22.32 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -7.06 Total: -103.44 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -1.96 Total: -19.28 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.05 Total: 53.50 kcal Total: -67.89 -2.82 -70.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564845415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.600 kcal (2) G-P(sol) polarization free energy of solvation -67.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds