Wall clock time and date at job start Mon Mar 30 2020 01:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 110.05442 * 2 1 4 4 C 1.54266 * 110.03467 * 238.58557 * 2 1 3 5 5 C 1.54887 * 104.19690 * 217.10211 * 4 2 1 6 6 C 1.54972 * 102.77592 * 37.91566 * 5 4 2 7 7 C 1.53871 * 110.03490 * 121.41676 * 2 1 3 8 8 H 1.09002 * 110.03536 * 238.62239 * 7 2 1 9 9 N 1.46900 * 110.03100 * 0.02562 * 7 2 1 10 10 C 1.46897 * 111.00421 * 195.29112 * 9 7 2 11 11 C 1.53001 * 109.47432 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.46922 * 305.00700 * 11 10 9 13 13 O 1.42893 * 109.46714 * 65.00723 * 11 10 9 14 14 C 1.53000 * 109.46986 * 185.00235 * 11 10 9 15 15 N 1.46901 * 109.47032 * 179.97438 * 14 11 10 16 16 C 1.46896 * 111.00168 * 293.95938 * 15 14 11 17 17 C 1.46905 * 111.00127 * 169.99793 * 15 14 11 18 18 C 1.50696 * 109.47190 * 190.00136 * 17 15 14 19 19 H 1.08002 * 119.99740 * 0.02562 * 18 17 15 20 20 C 1.37876 * 119.99734 * 180.02562 * 18 17 15 21 21 N 1.31519 * 119.99490 * 180.02562 * 20 18 17 22 22 Si 1.86791 * 120.00100 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47307 * 89.99933 * 22 20 18 24 24 H 1.48497 * 109.47158 * 329.99445 * 22 20 18 25 25 H 1.48510 * 109.47039 * 209.99686 * 22 20 18 26 26 H 1.08996 * 109.47404 * 304.93301 * 1 2 3 27 27 H 1.09001 * 109.47070 * 64.93210 * 1 2 3 28 28 H 1.09001 * 109.47416 * 184.93093 * 1 2 3 29 29 H 1.08998 * 110.48529 * 335.78190 * 4 2 1 30 30 H 1.09001 * 110.48412 * 98.29608 * 4 2 1 31 31 H 1.08998 * 110.75758 * 156.25353 * 5 4 2 32 32 H 1.09003 * 110.75879 * 279.44381 * 5 4 2 33 33 H 1.09001 * 110.52862 * 203.42960 * 6 5 4 34 34 H 1.09001 * 110.47295 * 80.76117 * 6 5 4 35 35 H 1.00900 * 111.00334 * 319.25002 * 9 7 2 36 36 H 1.09001 * 109.46913 * 60.00258 * 10 9 7 37 37 H 1.08998 * 109.47311 * 300.00672 * 10 9 7 38 38 H 0.96702 * 114.00719 * 59.99956 * 13 11 10 39 39 H 1.09003 * 109.47223 * 60.00675 * 14 11 10 40 40 H 1.08997 * 109.47421 * 300.00462 * 14 11 10 41 41 H 1.09004 * 109.46931 * 296.04413 * 16 15 14 42 42 H 1.08999 * 109.47323 * 56.04283 * 16 15 14 43 43 H 1.08998 * 109.46879 * 176.04649 * 16 15 14 44 44 H 1.09005 * 109.46626 * 70.00373 * 17 15 14 45 45 H 1.09002 * 109.46805 * 310.00657 * 17 15 14 46 46 H 0.97003 * 119.99402 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9037 1.0240 0.0000 4 6 2.0584 -0.7554 -1.2369 5 6 3.3137 -1.5006 -0.7192 6 6 2.8882 -1.9405 0.7046 7 6 2.0571 -0.7535 1.2337 8 1 2.6860 -0.0951 1.8329 9 7 0.9329 -1.2469 2.0403 10 6 1.3812 -1.6427 3.3820 11 6 0.1852 -2.1493 4.1907 12 1 -0.5954 -1.3887 4.2000 13 8 -0.3214 -3.3446 3.5936 14 6 0.6277 -2.4438 5.6254 15 7 -0.5208 -2.9296 6.4020 16 6 -1.5340 -1.8775 6.5576 17 6 -0.0922 -3.4453 7.7091 18 6 -1.2453 -4.1534 8.3724 19 1 -2.2008 -4.2145 7.8727 20 6 -1.0803 -4.7231 9.6170 21 7 -2.0866 -5.3414 10.1957 22 14 0.5722 -4.6166 10.4814 23 1 0.6179 -3.3868 11.3124 24 1 1.6580 -4.5710 9.4695 25 1 0.7543 -5.8077 11.3495 26 1 -0.3634 0.5884 0.8425 27 1 -0.3633 0.4354 -0.9309 28 1 -0.3634 -1.0238 0.0883 29 1 1.3143 -1.4659 -1.5967 30 1 2.3275 -0.0536 -2.0263 31 1 3.5326 -2.3677 -1.3423 32 1 4.1718 -0.8297 -0.6782 33 1 3.7644 -2.1028 1.3324 34 1 2.2783 -2.8428 0.6585 35 1 0.1965 -0.5591 2.0933 36 1 1.8221 -0.7827 3.8861 37 1 2.1250 -2.4349 3.2976 38 1 0.3210 -4.0662 3.5517 39 1 1.0141 -1.5320 6.0809 40 1 1.4084 -3.2043 5.6160 41 1 -1.1171 -1.0546 7.1383 42 1 -1.8337 -1.5134 5.5749 43 1 -2.4030 -2.2837 7.0751 44 1 0.2351 -2.6166 8.3370 45 1 0.7327 -4.1444 7.5710 46 1 -1.9706 -5.7419 11.0715 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564845417.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:22 Heat of formation + Delta-G solvation = -75.211818 kcal Electronic energy + Delta-G solvation = -21391.993710 eV Core-core repulsion = 18315.124306 eV Total energy + Delta-G solvation = -3076.869404 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.20438 -39.19077 -37.12981 -34.89092 -34.59621 -32.22769 -31.23879 -29.63703 -28.23244 -26.79536 -25.78413 -24.63183 -22.61320 -21.76391 -21.47652 -19.81976 -19.02273 -17.61503 -17.25962 -16.75689 -16.58634 -16.12808 -15.98768 -15.86299 -15.36378 -15.00248 -14.63977 -14.49581 -14.46063 -14.06399 -13.44535 -13.39621 -13.02160 -12.95060 -12.79975 -12.58934 -12.53798 -12.36117 -12.18081 -11.89746 -11.82250 -11.70271 -11.58924 -11.55867 -11.51433 -11.44218 -11.38837 -10.79868 -10.61623 -9.25921 -8.97390 -8.28460 -6.32181 1.33417 1.35776 1.46654 2.33966 2.92417 3.04676 3.41191 3.64163 3.73218 3.76454 3.94292 4.05027 4.18744 4.30444 4.39050 4.44967 4.49874 4.51646 4.57888 4.62897 4.67000 4.69300 4.71920 4.76833 4.84192 4.88299 5.00070 5.01702 5.06789 5.11682 5.14732 5.23534 5.25298 5.30042 5.34100 5.48257 5.52874 5.59500 5.97679 6.17333 6.35485 6.49324 6.66349 6.74580 7.06364 7.31380 8.88567 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.038901 B = 0.003196 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.603838 B = 8757.980613 C = 9086.677774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 H 0.076 0.924 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.115 4.115 7 C 0.083 3.917 8 H 0.039 0.961 9 N -0.678 5.678 10 C 0.037 3.963 11 C 0.128 3.872 12 H 0.087 0.913 13 O -0.555 6.555 14 C 0.022 3.978 15 N -0.539 5.539 16 C 0.042 3.958 17 C 0.172 3.828 18 C -0.517 4.517 19 H 0.034 0.966 20 C 0.005 3.995 21 N -0.950 5.950 22 Si 0.951 3.049 23 H -0.268 1.268 24 H -0.247 1.247 25 H -0.281 1.281 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.344 0.656 36 H 0.041 0.959 37 H 0.078 0.922 38 H 0.378 0.622 39 H 0.040 0.960 40 H 0.076 0.924 41 H 0.019 0.981 42 H 0.075 0.925 43 H 0.044 0.956 44 H -0.015 1.015 45 H 0.030 0.970 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.341 12.870 -21.757 28.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 H 0.094 0.906 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.153 4.153 7 C -0.026 4.026 8 H 0.057 0.943 9 N -0.312 5.312 10 C -0.093 4.093 11 C 0.067 3.933 12 H 0.105 0.895 13 O -0.360 6.360 14 C -0.107 4.107 15 N -0.263 5.263 16 C -0.106 4.106 17 C 0.045 3.955 18 C -0.556 4.556 19 H 0.053 0.947 20 C -0.192 4.192 21 N -0.590 5.590 22 Si 0.774 3.226 23 H -0.193 1.193 24 H -0.171 1.171 25 H -0.206 1.206 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.166 0.834 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.225 0.775 39 H 0.058 0.942 40 H 0.095 0.905 41 H 0.038 0.962 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.003 0.997 45 H 0.048 0.952 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.560 12.126 -22.165 28.215 hybrid contribution 1.127 0.902 1.918 2.400 sum 13.687 13.028 -20.248 27.695 Atomic orbital electron populations 1.21742 0.94653 1.02283 1.01279 1.21854 0.96348 0.98882 0.94197 0.90606 1.22386 0.97180 0.98920 0.96763 1.22463 0.97741 1.00181 0.95606 1.22423 0.98424 0.98012 0.96451 1.22231 0.91346 0.95104 0.93963 0.94343 1.60714 1.11115 1.46420 1.12989 1.22556 0.96948 1.00325 0.89472 1.21748 0.95361 0.87656 0.88497 0.89516 1.86567 1.43365 1.23606 1.82457 1.22889 0.93269 0.99326 0.95249 1.61725 1.12028 1.34816 1.17733 1.22186 0.95810 0.92127 1.00478 1.19968 0.95320 0.93733 0.86514 1.21283 0.97829 1.34493 1.01958 0.94719 1.25899 1.00920 0.94410 0.97960 1.70066 1.33686 1.38480 1.16816 0.85663 0.79936 0.78107 0.78880 1.19309 1.17107 1.20626 0.92876 0.92249 0.92157 0.91931 0.90847 0.91161 0.91022 0.92158 0.91677 0.83444 0.94052 0.90346 0.77482 0.94192 0.90516 0.96242 0.90614 0.93751 0.99704 0.95152 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 7.77 71.98 0.56 -1.54 16 2 C -0.09 -1.33 3.50 -10.07 -0.04 -1.36 16 3 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 4 C -0.11 -1.50 6.36 31.67 0.20 -1.30 16 5 C -0.12 -1.59 6.91 31.91 0.22 -1.37 16 6 C -0.11 -1.85 6.01 31.70 0.19 -1.66 16 7 C 0.08 1.36 3.21 45.64 0.15 1.51 16 8 H 0.04 0.64 7.97 -2.39 -0.02 0.62 16 9 N -0.68 -12.97 5.21 -487.85 -2.54 -15.51 16 10 C 0.04 0.75 5.15 86.30 0.44 1.19 16 11 C 0.13 3.33 3.02 30.59 0.09 3.42 16 12 H 0.09 2.34 6.47 -2.39 -0.02 2.32 16 13 O -0.55 -16.90 13.15 -148.98 -1.96 -18.86 16 14 C 0.02 0.67 4.62 86.30 0.40 1.07 16 15 N -0.54 -22.53 4.62 -927.04 -4.28 -26.82 16 16 C 0.04 1.66 9.16 127.69 1.17 2.83 16 17 C 0.17 8.33 3.79 85.55 0.32 8.66 16 18 C -0.52 -30.66 9.07 25.60 0.23 -30.43 16 19 H 0.03 2.31 7.35 -2.91 -0.02 2.29 16 20 C 0.01 0.30 5.47 84.65 0.46 0.76 16 21 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 22 Si 0.95 44.31 27.47 68.60 1.88 46.19 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 26 H 0.05 0.75 7.03 -2.39 -0.02 0.73 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 1.11 7.49 -2.39 -0.02 1.09 16 29 H 0.06 0.91 7.85 -2.39 -0.02 0.89 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 1.26 8.05 -2.39 -0.02 1.24 16 35 H 0.34 6.43 6.13 -89.69 -0.55 5.88 16 36 H 0.04 0.78 8.09 -2.39 -0.02 0.76 16 37 H 0.08 1.54 7.77 -2.39 -0.02 1.52 16 38 H 0.38 9.62 9.05 -74.06 -0.67 8.95 16 39 H 0.04 1.15 8.12 -2.39 -0.02 1.13 16 40 H 0.08 2.27 7.93 -2.39 -0.02 2.25 16 41 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.08 2.54 6.30 -2.39 -0.02 2.52 16 43 H 0.04 2.02 6.86 -2.39 -0.02 2.01 16 44 H -0.01 -0.70 7.55 -2.38 -0.02 -0.71 16 45 H 0.03 1.45 6.99 -2.39 -0.02 1.43 16 46 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -68.52 351.51 -2.52 -71.04 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -0.33 Total: 22.28 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 4.41 Total: -18.21 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -6.52 Total: -102.44 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -1.96 Total: -18.86 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.19 kcal Total: -68.52 -2.52 -71.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564845417.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.172 kcal (2) G-P(sol) polarization free energy of solvation -68.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds