Wall clock time and date at job start Mon Mar 30 2020 01:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00022 * 2 1 4 4 C 1.50704 * 109.47043 * 293.95520 * 3 2 1 5 5 H 1.07996 * 120.00265 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99759 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00054 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99579 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.46907 * 269.99695 * 8 6 4 10 10 H 1.48499 * 109.47646 * 29.99706 * 8 6 4 11 11 H 1.48495 * 109.47102 * 150.00214 * 8 6 4 12 12 C 1.46899 * 111.00056 * 123.95456 * 2 1 3 13 13 C 1.53003 * 109.46917 * 160.25582 * 12 2 1 14 14 H 1.08999 * 109.47237 * 57.28361 * 13 12 2 15 15 O 1.42893 * 109.47003 * 297.28249 * 13 12 2 16 16 C 1.53001 * 109.46641 * 177.28360 * 13 12 2 17 17 N 1.46908 * 109.46997 * 185.00224 * 16 13 12 18 18 C 1.46894 * 111.00064 * 180.02562 * 17 16 13 19 19 C 1.53004 * 109.47164 * 179.97438 * 18 17 16 20 20 H 1.08993 * 115.54578 * 29.41563 * 19 18 17 21 21 C 1.53003 * 117.49898 * 243.75037 * 19 18 17 22 22 C 1.52994 * 117.50088 * 175.08678 * 19 18 17 23 23 C 1.52993 * 117.49968 * 214.98009 * 22 19 18 24 24 C 1.53004 * 117.49874 * 0.02562 * 22 19 18 25 25 H 1.09002 * 109.47252 * 65.26263 * 1 2 3 26 26 H 1.09003 * 109.47398 * 185.26178 * 1 2 3 27 27 H 1.09001 * 109.47318 * 305.25884 * 1 2 3 28 28 H 1.09001 * 109.47556 * 173.95359 * 3 2 1 29 29 H 1.09000 * 109.47047 * 53.95268 * 3 2 1 30 30 H 0.97000 * 120.00100 * 0.02562 * 7 6 4 31 31 H 1.09001 * 109.46871 * 280.25555 * 12 2 1 32 32 H 1.09001 * 109.47298 * 40.25586 * 12 2 1 33 33 H 0.96702 * 114.00184 * 300.00274 * 15 13 12 34 34 H 1.08997 * 109.47533 * 304.99618 * 16 13 12 35 35 H 1.08997 * 109.47190 * 65.00430 * 16 13 12 36 36 H 1.00896 * 110.99572 * 56.03997 * 17 16 13 37 37 H 1.08995 * 109.47211 * 299.99896 * 18 17 16 38 38 H 1.09007 * 109.47245 * 59.99922 * 18 17 16 39 39 H 1.08998 * 117.49654 * 359.97438 * 21 19 18 40 40 H 1.08999 * 117.49566 * 144.99720 * 21 19 18 41 41 H 1.09004 * 109.47399 * 60.00482 * 23 22 19 42 42 H 1.09002 * 109.47081 * 179.97438 * 23 22 19 43 43 H 1.08992 * 109.47523 * 299.99854 * 23 22 19 44 44 H 1.09005 * 109.47192 * 59.99784 * 24 22 19 45 45 H 1.09002 * 109.47339 * 179.97438 * 24 22 19 46 46 H 1.08997 * 109.47469 * 300.00435 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 -1.2985 5 1 1.0738 1.5115 -2.0485 6 6 2.0267 3.3495 -1.5285 7 7 2.7110 4.0022 -0.6146 8 14 1.5816 4.1873 -3.1377 9 1 2.6583 3.9513 -4.1329 10 1 0.3039 3.6298 -3.6492 11 1 1.4291 5.6467 -2.9103 12 6 1.9954 -0.7660 1.1376 13 6 3.4457 -1.1643 0.8567 14 1 4.0378 -0.2694 0.6654 15 8 3.4918 -2.0194 -0.2873 16 6 4.0155 -1.9034 2.0692 17 7 5.4412 -2.1804 1.8483 18 6 6.0231 -2.8914 2.9944 19 6 7.5052 -3.1621 2.7277 20 1 8.0079 -2.4366 2.0883 21 6 7.9489 -4.6227 2.6235 22 6 8.3219 -3.7950 3.8560 23 6 9.7820 -3.3613 4.0002 24 6 7.5940 -4.1092 5.1646 25 1 -0.3634 0.4300 -0.9334 26 1 -0.3634 -1.0233 0.0942 27 1 -0.3634 0.5932 0.8391 28 1 3.0797 1.3445 0.1082 29 1 1.5610 1.9273 0.8309 30 1 2.9418 3.5673 0.2212 31 1 1.9548 -0.1532 2.0381 32 1 1.3935 -1.6633 1.2812 33 1 2.9854 -2.8372 -0.1877 34 1 3.8992 -1.2851 2.9592 35 1 3.4799 -2.8427 2.2067 36 1 5.9487 -1.3303 1.6539 37 1 5.9207 -2.2803 3.8912 38 1 5.5013 -3.8376 3.1380 39 1 7.1851 -5.3906 2.7454 40 1 8.7437 -4.8579 1.9156 41 1 9.8260 -2.2872 4.1804 42 1 10.2366 -3.8889 4.8387 43 1 10.3237 -3.5986 3.0846 44 1 6.7816 -4.8094 4.9694 45 1 8.2941 -4.5537 5.8722 46 1 7.1876 -3.1891 5.5844 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567691036.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:23 Heat of formation + Delta-G solvation = -60.496743 kcal Electronic energy + Delta-G solvation = -20895.307985 eV Core-core repulsion = 17819.076675 eV Total energy + Delta-G solvation = -3076.231310 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.96445 -39.40867 -37.46953 -35.82489 -34.83347 -31.58946 -30.12439 -28.97987 -28.59054 -27.66787 -25.86837 -24.63701 -22.99759 -22.19992 -21.77079 -19.62121 -18.99333 -17.67640 -17.05236 -16.60557 -16.31040 -16.15836 -15.69024 -15.62042 -15.56062 -15.03211 -14.92255 -14.55889 -14.12671 -13.77360 -13.70320 -13.35168 -13.27104 -13.25065 -13.01455 -12.84633 -12.78804 -12.67095 -12.53103 -12.37535 -12.27904 -11.93391 -11.91188 -11.71162 -10.96212 -10.80289 -10.69695 -10.58216 -10.41171 -9.37343 -9.07783 -8.69543 -6.39195 1.51986 1.61476 1.79494 2.54563 2.65964 2.94189 3.13379 3.34056 3.63071 3.74321 3.83209 3.89798 3.94150 4.11447 4.18322 4.26003 4.35408 4.40560 4.46174 4.50269 4.54429 4.62755 4.65616 4.70709 4.76875 4.82805 4.84046 4.92559 4.94196 5.03287 5.05207 5.05623 5.09372 5.11929 5.26046 5.29372 5.45493 5.77093 5.97266 6.01758 6.28077 6.36968 6.41113 6.63393 7.06292 7.40537 8.69298 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.024945 B = 0.003093 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.192874 B = 9049.723819 C = 9628.289071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.539 5.539 3 C 0.196 3.804 4 C -0.598 4.598 5 H 0.052 0.948 6 C -0.039 4.039 7 N -0.938 5.938 8 Si 1.123 2.877 9 H -0.274 1.274 10 H -0.269 1.269 11 H -0.281 1.281 12 C 0.024 3.976 13 C 0.127 3.873 14 H 0.057 0.943 15 O -0.553 6.553 16 C 0.043 3.957 17 N -0.689 5.689 18 C 0.098 3.902 19 C -0.154 4.154 20 H 0.094 0.906 21 C -0.164 4.164 22 C -0.126 4.126 23 C -0.116 4.116 24 C -0.115 4.115 25 H 0.053 0.947 26 H 0.086 0.914 27 H 0.007 0.993 28 H -0.001 1.001 29 H -0.046 1.046 30 H 0.252 0.748 31 H 0.028 0.972 32 H 0.100 0.900 33 H 0.379 0.621 34 H 0.039 0.961 35 H 0.094 0.906 36 H 0.337 0.663 37 H 0.032 0.968 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.453 -18.360 11.508 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.262 5.262 3 C 0.069 3.931 4 C -0.636 4.636 5 H 0.070 0.930 6 C -0.236 4.236 7 N -0.576 5.576 8 Si 0.944 3.056 9 H -0.200 1.200 10 H -0.194 1.194 11 H -0.206 1.206 12 C -0.105 4.105 13 C 0.067 3.933 14 H 0.075 0.925 15 O -0.359 6.359 16 C -0.087 4.087 17 N -0.320 5.320 18 C -0.030 4.030 19 C -0.172 4.172 20 H 0.112 0.888 21 C -0.201 4.201 22 C -0.127 4.127 23 C -0.173 4.173 24 C -0.172 4.172 25 H 0.071 0.929 26 H 0.105 0.895 27 H 0.026 0.974 28 H 0.017 0.983 29 H -0.028 1.028 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.118 0.882 33 H 0.227 0.773 34 H 0.057 0.943 35 H 0.112 0.888 36 H 0.155 0.845 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.989 -17.299 9.665 21.366 hybrid contribution -0.576 -0.286 2.559 2.639 sum 7.414 -17.585 12.224 22.663 Atomic orbital electron populations 1.22218 0.87156 1.01090 1.00018 1.61841 1.08112 1.14398 1.41885 1.19554 0.93347 0.85211 0.94972 1.22319 1.38222 1.00022 1.03001 0.92961 1.27433 0.93657 0.95902 1.06619 1.70903 1.38490 1.40175 1.07998 0.82860 0.77025 0.75019 0.70698 1.20000 1.19365 1.20618 1.22860 0.97289 0.98722 0.91587 1.21635 0.93790 0.92096 0.85798 0.92533 1.86638 1.75044 1.34806 1.39367 1.22526 0.89797 1.00529 0.95882 1.60364 1.02363 1.28696 1.40529 1.21457 0.92594 0.98417 0.90573 1.22351 0.94861 0.97309 1.02722 0.88781 1.23321 1.03352 0.93438 0.99940 1.21768 0.96274 1.03547 0.91070 1.21375 0.92341 1.01193 1.02384 1.21357 0.99924 1.01326 0.94591 0.92854 0.89519 0.97398 0.98341 1.02822 0.93877 0.95411 0.88159 0.77327 0.94315 0.88760 0.84505 0.95006 0.90538 0.88472 0.88766 0.92524 0.91002 0.92417 0.92170 0.91114 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.68 9.31 127.69 1.19 2.87 16 2 N -0.54 -23.76 4.60 -927.04 -4.26 -28.02 16 3 C 0.20 10.70 3.86 85.56 0.33 11.03 16 4 C -0.60 -35.49 8.58 25.60 0.22 -35.27 16 5 H 0.05 3.10 7.10 -2.91 -0.02 3.08 16 6 C -0.04 -2.33 5.46 84.66 0.46 -1.87 16 7 N -0.94 -59.36 13.65 21.45 0.29 -59.07 16 8 Si 1.12 52.05 29.90 68.60 2.05 54.10 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 C 0.02 0.83 4.65 86.30 0.40 1.23 16 13 C 0.13 4.19 3.22 30.60 0.10 4.29 16 14 H 0.06 2.33 6.72 -2.39 -0.02 2.31 16 15 O -0.55 -19.11 13.20 -148.98 -1.97 -21.07 16 16 C 0.04 1.05 5.32 86.30 0.46 1.51 16 17 N -0.69 -17.15 6.45 -513.88 -3.31 -20.46 16 18 C 0.10 1.97 5.05 86.31 0.44 2.40 16 19 C -0.15 -2.96 5.67 -10.79 -0.06 -3.02 16 20 H 0.09 2.03 8.13 -2.39 -0.02 2.01 16 21 C -0.16 -2.75 9.47 30.62 0.29 -2.46 16 22 C -0.13 -1.98 2.70 -52.16 -0.14 -2.12 16 23 C -0.12 -1.61 9.85 71.98 0.71 -0.91 16 24 C -0.11 -1.53 8.86 71.98 0.64 -0.89 16 25 H 0.05 2.26 7.01 -2.39 -0.02 2.24 16 26 H 0.09 2.61 7.85 -2.39 -0.02 2.59 16 27 H 0.01 0.29 8.07 -2.39 -0.02 0.27 16 28 H 0.00 -0.08 6.46 -2.39 -0.02 -0.09 16 29 H -0.05 -2.65 7.94 -2.39 -0.02 -2.67 16 30 H 0.25 16.17 7.22 -92.71 -0.67 15.50 16 31 H 0.03 0.96 8.00 -2.39 -0.02 0.94 16 32 H 0.10 2.65 7.75 -2.39 -0.02 2.63 16 33 H 0.38 9.62 9.05 -74.06 -0.67 8.95 16 34 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.34 9.04 8.72 -89.70 -0.78 8.25 16 37 H 0.03 0.63 7.77 -2.39 -0.02 0.61 16 38 H 0.08 1.43 7.87 -2.38 -0.02 1.41 16 39 H 0.10 1.54 7.94 -2.39 -0.02 1.52 16 40 H 0.09 1.53 8.05 -2.39 -0.02 1.51 16 41 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.07 0.82 7.92 -2.39 -0.02 0.80 16 43 H 0.06 0.79 7.90 -2.39 -0.02 0.77 16 44 H 0.06 0.76 7.90 -2.38 -0.02 0.74 16 45 H 0.07 0.78 7.92 -2.39 -0.02 0.76 16 46 H 0.06 0.78 7.84 -2.39 -0.02 0.77 16 Total: -1.00 -70.85 366.68 -2.58 -73.43 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -0.41 Total: 24.31 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: 5.03 Total: -23.22 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -7.28 Total: -107.55 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -1.97 Total: -21.07 kcal Atomic # 14 Polarization: 52.05 SS G_CDS: 2.05 Total: 54.10 kcal Total: -70.85 -2.58 -73.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567691036.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.934 kcal (2) G-P(sol) polarization free energy of solvation -70.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds