Wall clock time and date at job start Mon Mar 30 2020 01:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 113.99913 * 2 1 4 4 C 1.53007 * 109.47058 * 299.99856 * 3 2 1 5 5 C 1.53000 * 109.47457 * 59.99935 * 3 2 1 6 6 C 1.53004 * 109.47028 * 180.02562 * 3 2 1 7 7 H 1.09001 * 109.47103 * 179.97438 * 6 3 2 8 8 C 1.52988 * 109.47147 * 59.99649 * 6 3 2 9 9 N 1.46897 * 109.46614 * 299.99334 * 6 3 2 10 10 C 1.46905 * 111.00065 * 226.61032 * 9 6 3 11 11 C 1.53040 * 109.46262 * 272.76527 * 10 9 6 12 12 C 1.53188 * 109.31077 * 178.61368 * 11 10 9 13 13 N 1.46920 * 108.77752 * 54.63668 * 12 11 10 14 14 C 1.36934 * 120.63383 * 126.36888 * 13 12 11 15 15 H 1.08001 * 120.00152 * 209.49938 * 14 13 12 16 16 C 1.38811 * 119.99798 * 29.49247 * 14 13 12 17 17 N 1.31620 * 120.00284 * 14.44325 * 16 14 13 18 18 Si 1.86805 * 119.99833 * 194.43753 * 16 14 13 19 19 H 1.48505 * 109.47043 * 90.00455 * 18 16 14 20 20 H 1.48502 * 109.47156 * 210.00095 * 18 16 14 21 21 H 1.48495 * 109.47458 * 330.00264 * 18 16 14 22 22 C 1.46924 * 118.73731 * 306.38866 * 13 12 11 23 23 C 1.53038 * 109.45669 * 152.69545 * 10 9 6 24 24 H 1.08995 * 109.46876 * 60.00075 * 1 2 3 25 25 H 1.08996 * 109.47176 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46981 * 300.00220 * 1 2 3 27 27 H 1.09005 * 109.46951 * 59.99995 * 4 3 2 28 28 H 1.09001 * 109.47182 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.47299 * 300.00491 * 4 3 2 30 30 H 1.08998 * 109.46898 * 59.99930 * 5 3 2 31 31 H 1.09001 * 109.47258 * 180.02562 * 5 3 2 32 32 H 1.09005 * 109.46972 * 300.00261 * 5 3 2 33 33 H 1.08997 * 109.47427 * 306.83168 * 8 6 3 34 34 H 1.09005 * 109.47736 * 66.83421 * 8 6 3 35 35 H 1.09001 * 109.47339 * 186.82755 * 8 6 3 36 36 H 1.00907 * 110.99726 * 102.66124 * 9 6 3 37 37 H 1.08995 * 109.45477 * 32.72530 * 10 9 6 38 38 H 1.09002 * 109.49655 * 298.56506 * 11 10 9 39 39 H 1.09000 * 109.49665 * 58.66429 * 11 10 9 40 40 H 1.08997 * 109.58603 * 294.84450 * 12 11 10 41 41 H 1.09001 * 109.58198 * 174.42252 * 12 11 10 42 42 H 0.96997 * 120.00396 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.58998 * 293.82536 * 22 13 12 44 44 H 1.09005 * 109.70329 * 173.46553 * 22 13 12 45 45 H 1.08996 * 109.50026 * 301.33603 * 23 10 9 46 46 H 1.09002 * 109.50070 * 61.43917 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5588 2.0647 -1.2493 5 6 1.5588 2.0648 1.2492 6 6 3.5355 1.1846 -0.0006 7 1 3.9789 2.1804 -0.0011 8 6 3.9864 0.4256 -1.2501 9 7 3.9693 0.4555 1.1986 10 6 5.0910 1.1410 1.8544 11 6 6.4089 0.6697 1.2354 12 6 7.5737 1.4119 1.8978 13 7 7.4888 1.2232 3.3524 14 6 8.5597 0.7422 4.0573 15 1 8.3996 0.1699 4.9591 16 6 9.8511 0.9900 3.6126 17 7 10.0663 1.9084 2.6947 18 14 11.2837 0.0200 4.3171 19 1 11.5034 -1.2014 3.5015 20 1 12.5091 0.8586 4.2925 21 1 10.9778 -0.3683 5.7174 22 6 6.2328 1.5599 4.0362 23 6 5.0828 0.8160 3.3499 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.4721 2.1507 -1.2493 28 1 2.0025 3.0603 -1.2496 29 1 1.8804 1.5237 -2.1393 30 1 1.8805 1.5239 2.1392 31 1 2.0018 3.0607 1.2489 32 1 0.4722 2.1508 1.2492 33 1 3.4503 -0.5213 -1.3132 34 1 3.7726 1.0239 -2.1358 35 1 5.0578 0.2333 -1.1916 36 1 4.2099 -0.4985 0.9745 37 1 4.9895 2.2174 1.7162 38 1 6.5228 -0.4025 1.3950 39 1 6.4043 0.8804 0.1660 40 1 7.5108 2.4744 1.6629 41 1 8.5185 1.0100 1.5317 42 1 10.9687 2.0818 2.3842 43 1 6.0604 2.6345 3.9757 44 1 6.2911 1.2575 5.0819 45 1 4.1346 1.1308 3.7855 46 1 5.2093 -0.2576 3.4896 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585725402.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:54 Heat of formation + Delta-G solvation = -31.437697 kcal Electronic energy + Delta-G solvation = -22447.055885 eV Core-core repulsion = 19372.084669 eV Total energy + Delta-G solvation = -3074.971215 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.49164 -37.78674 -35.44254 -33.15394 -31.63229 -30.03942 -29.76928 -28.33068 -27.08319 -26.68338 -24.53778 -22.68037 -22.00424 -21.29024 -19.90819 -18.90229 -16.80140 -16.19373 -15.80486 -15.16940 -14.93527 -14.56565 -14.53645 -13.77931 -13.56991 -13.40955 -13.13717 -12.95286 -12.75629 -12.56693 -12.42661 -12.17609 -11.97757 -11.87849 -11.50679 -11.25289 -11.22000 -11.07034 -10.84553 -10.69603 -10.63667 -10.47569 -10.27508 -10.09066 -9.94729 -9.59046 -9.50206 -9.35693 -8.46342 -7.88434 -6.59560 -5.74578 -3.19113 3.39851 3.46474 3.47831 3.83843 4.36530 4.52767 4.77429 4.95328 5.13054 5.24981 5.29770 5.33592 5.40312 5.45386 5.48291 5.52614 5.57091 5.63412 5.68782 5.74045 5.77043 5.81649 5.93505 6.01484 6.06938 6.14500 6.23241 6.29997 6.41895 6.45640 6.59193 6.63773 6.71242 6.75695 6.90036 7.08394 7.30176 7.40393 7.55937 7.69288 7.81264 7.84507 8.50860 9.26420 9.89526 10.47152 11.33601 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.038878 B = 0.004045 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.021169 B = 6919.778110 C = 7138.380955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.125 3.875 4 C -0.182 4.182 5 C -0.168 4.168 6 C 0.101 3.899 7 H 0.078 0.922 8 C -0.175 4.175 9 N -0.675 5.675 10 C 0.096 3.904 11 C -0.168 4.168 12 C 0.176 3.824 13 N -0.592 5.592 14 C -0.250 4.250 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.905 5.905 18 Si 0.903 3.097 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.145 3.855 23 C -0.116 4.116 24 H 0.036 0.964 25 H 0.078 0.922 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.343 0.657 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.015 0.985 41 H 0.085 0.915 42 H 0.253 0.747 43 H 0.015 0.985 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.456 -0.729 -7.605 19.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.285 6.285 3 C 0.085 3.915 4 C -0.240 4.240 5 C -0.226 4.226 6 C -0.010 4.010 7 H 0.096 0.904 8 C -0.234 4.234 9 N -0.304 5.304 10 C -0.014 4.014 11 C -0.208 4.208 12 C 0.049 3.951 13 N -0.315 5.315 14 C -0.380 4.380 15 H 0.082 0.918 16 C -0.197 4.197 17 N -0.550 5.550 18 Si 0.733 3.267 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.204 1.204 22 C 0.018 3.982 23 C -0.156 4.156 24 H 0.055 0.945 25 H 0.097 0.903 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.161 0.839 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.033 0.967 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.654 -0.552 -7.235 19.087 hybrid contribution 1.282 -0.368 -0.416 1.397 sum -16.372 -0.920 -7.651 18.095 Atomic orbital electron populations 1.22715 0.82684 1.02017 0.99655 1.87999 1.18321 1.27301 1.94857 1.21540 0.93491 0.83051 0.93419 1.22505 1.01466 1.01066 0.98951 1.22271 1.00020 1.00535 0.99756 1.21518 0.91853 0.97967 0.89657 0.90373 1.22447 1.01463 1.01457 0.97998 1.60590 1.38668 1.05741 1.25446 1.21637 0.87934 0.97120 0.94665 1.22918 0.98282 1.01300 0.98327 1.20686 0.95708 0.95599 0.83100 1.44033 1.09706 1.75448 1.02337 1.19215 0.84558 1.26082 1.08124 0.91775 1.25084 0.97604 0.97389 0.99580 1.70009 1.20143 1.31796 1.33078 0.86280 0.82170 0.79441 0.78825 1.21501 1.21778 1.20420 1.20932 0.86431 0.95479 0.95376 1.21969 0.98421 1.00947 0.94247 0.94505 0.90312 0.94059 0.92430 0.91667 0.91682 0.90079 0.92368 0.93402 0.91482 0.92549 0.92307 0.83865 0.91672 0.92636 0.93701 0.96697 0.89661 0.93720 0.96733 0.92852 0.92798 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.21 101.05 1.03 1.28 16 2 O -0.37 -4.56 9.42 -35.23 -0.33 -4.89 16 3 C 0.13 1.45 0.58 -90.61 -0.05 1.40 16 4 C -0.18 -1.76 7.90 37.16 0.29 -1.46 16 5 C -0.17 -1.94 8.10 37.16 0.30 -1.64 16 6 C 0.10 1.29 2.05 -67.72 -0.14 1.15 16 7 H 0.08 1.05 7.13 -51.93 -0.37 0.68 16 8 C -0.18 -2.10 8.44 37.15 0.31 -1.79 16 9 N -0.68 -9.83 5.24 -99.70 -0.52 -10.36 16 10 C 0.10 1.62 2.39 -67.67 -0.16 1.46 16 11 C -0.17 -3.20 5.31 -26.61 -0.14 -3.34 16 12 C 0.18 4.23 5.28 -3.72 -0.02 4.21 16 13 N -0.59 -15.07 2.99 -172.32 -0.52 -15.58 16 14 C -0.25 -6.97 9.59 -15.06 -0.14 -7.12 16 15 H 0.06 1.76 7.87 -52.49 -0.41 1.35 16 16 C 0.00 0.05 4.97 -17.43 -0.09 -0.04 16 17 N -0.91 -26.56 11.14 55.49 0.62 -25.94 16 18 Si 0.90 21.96 29.58 -169.99 -5.03 16.93 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.14 3.11 6.51 -3.71 -0.02 3.08 16 23 C -0.12 -2.10 5.69 -26.61 -0.15 -2.25 16 24 H 0.04 0.31 6.42 -51.93 -0.33 -0.03 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.38 6.42 -51.93 -0.33 0.04 16 27 H 0.06 0.50 6.54 -51.93 -0.34 0.16 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.62 6.59 -51.93 -0.34 0.28 16 30 H 0.08 1.09 7.61 -51.93 -0.39 0.69 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.48 6.54 -51.93 -0.34 0.14 16 33 H 0.07 0.82 7.49 -51.93 -0.39 0.44 16 34 H 0.06 0.60 6.81 -51.93 -0.35 0.25 16 35 H 0.06 0.75 6.69 -51.93 -0.35 0.40 16 36 H 0.34 5.13 7.90 -39.29 -0.31 4.82 16 37 H 0.07 1.15 7.31 -51.93 -0.38 0.77 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.04 0.79 6.70 -51.93 -0.35 0.44 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 2.31 6.08 -51.93 -0.32 2.00 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 342.15 15.07 5.16 5.16 Total: -1.00 -29.19 342.15 -7.84 -37.03 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.24 Total: 2.70 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 1.02 Total: -5.05 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.42 Total: -51.87 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.33 Total: -4.89 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.19 -7.84 -37.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585725402.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.597 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds