Wall clock time and date at job start Mon Mar 30 2020 01:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46883 * 2 1 4 4 C 1.53000 * 109.47459 * 119.99375 * 2 1 3 5 5 N 1.46900 * 109.47365 * 295.00563 * 4 2 1 6 6 C 1.46900 * 111.00139 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46763 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47636 * 60.00423 * 7 6 5 9 9 O 1.42898 * 109.47520 * 299.99544 * 7 6 5 10 10 C 1.53002 * 109.46913 * 179.97438 * 7 6 5 11 11 N 1.46900 * 109.47530 * 180.46134 * 10 7 6 12 12 C 1.46894 * 111.00342 * 199.85549 * 11 10 7 13 13 C 1.46901 * 110.99906 * 75.89719 * 11 10 7 14 14 C 1.50693 * 109.47136 * 190.00524 * 13 11 10 15 15 H 1.07997 * 120.00350 * 359.97438 * 14 13 11 16 16 C 1.37884 * 119.99670 * 180.02562 * 14 13 11 17 17 N 1.31512 * 120.00169 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99647 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47382 * 89.99510 * 18 16 14 20 20 H 1.48505 * 109.46936 * 209.99382 * 18 16 14 21 21 H 1.48508 * 109.47291 * 329.99376 * 18 16 14 22 22 C 1.52998 * 109.47342 * 239.99634 * 2 1 3 23 23 C 1.53007 * 117.50039 * 128.61945 * 22 2 1 24 24 C 1.53000 * 117.49902 * 59.99801 * 22 2 1 25 25 H 1.09000 * 109.46281 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47020 * 299.99982 * 1 2 3 27 27 H 1.08995 * 109.47177 * 60.00563 * 1 2 3 28 28 H 1.09001 * 109.46956 * 54.99977 * 4 2 1 29 29 H 1.08995 * 109.47676 * 175.00032 * 4 2 1 30 30 H 1.00900 * 110.99842 * 56.03928 * 5 4 2 31 31 H 1.09000 * 109.46906 * 299.99545 * 6 5 4 32 32 H 1.08995 * 109.47361 * 59.99510 * 6 5 4 33 33 H 0.96697 * 113.99713 * 300.00747 * 9 7 6 34 34 H 1.09000 * 109.47541 * 300.46712 * 10 7 6 35 35 H 1.09005 * 109.46782 * 60.46512 * 10 7 6 36 36 H 1.08996 * 109.47487 * 64.82026 * 12 11 10 37 37 H 1.09000 * 109.47273 * 184.82491 * 12 11 10 38 38 H 1.09001 * 109.46952 * 304.82204 * 12 11 10 39 39 H 1.09004 * 109.46899 * 310.00317 * 13 11 10 40 40 H 1.09003 * 109.46673 * 70.00092 * 13 11 10 41 41 H 0.96997 * 119.99596 * 179.97438 * 17 16 14 42 42 H 1.08997 * 115.55977 * 274.31033 * 22 2 1 43 43 H 1.09003 * 117.49225 * 0.02562 * 23 22 2 44 44 H 1.09000 * 117.49898 * 145.02155 * 23 22 2 45 45 H 1.09001 * 117.50015 * 214.97964 * 24 22 2 46 46 H 1.09010 * 117.49939 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 1.6514 0.0376 2.4457 6 6 2.1249 -0.6269 3.6673 7 6 1.7025 0.1913 4.8892 8 1 0.6156 0.2696 4.9161 9 8 2.2723 1.4992 4.8070 10 6 2.1950 -0.5010 6.1616 11 7 1.7800 0.2787 7.3354 12 6 2.5972 -0.0599 8.5081 13 6 0.3509 0.0868 7.6164 14 6 -0.0931 1.0780 8.6610 15 1 0.6154 1.7800 9.0751 16 6 -1.4039 1.0879 9.0888 17 7 -2.2666 0.2328 8.5849 18 14 -1.9541 2.3162 10.3842 19 1 -2.4216 3.5596 9.7206 20 1 -3.0639 1.7325 11.1799 21 1 -0.8144 2.6327 11.2821 22 6 2.0401 -0.7213 -1.2492 23 6 3.0742 0.0051 -2.1117 24 6 1.6358 -0.1497 -2.6096 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.6055 -1.7197 1.2953 29 1 3.1264 -0.7993 1.2057 30 1 0.6529 0.1794 2.4753 31 1 1.6905 -1.6246 3.7298 32 1 3.2117 -0.7048 3.6406 33 1 3.2389 1.5060 4.7792 34 1 1.7666 -1.5016 6.2200 35 1 3.2825 -0.5722 6.1387 36 1 3.6306 0.2366 8.3287 37 1 2.2145 0.4671 9.3821 38 1 2.5529 -1.1348 8.6837 39 1 -0.2229 0.2405 6.7024 40 1 0.1856 -0.9263 7.9831 41 1 -3.1885 0.2396 8.8862 42 1 2.1272 -1.8045 -1.1641 43 1 3.3915 0.9967 -1.7889 44 1 3.8417 -0.6002 -2.5941 45 1 1.4569 -0.8568 -3.4196 46 1 1.0060 0.7401 -2.6146 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591240786.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:40 Heat of formation + Delta-G solvation = -33.348453 kcal Electronic energy + Delta-G solvation = -20915.358557 eV Core-core repulsion = 17840.304485 eV Total energy + Delta-G solvation = -3075.054072 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.76319 -37.90843 -35.96911 -34.94771 -32.45987 -32.06445 -29.39047 -27.30041 -26.60539 -25.07745 -23.42981 -22.51904 -22.07293 -21.49266 -20.02164 -19.86740 -16.69798 -16.47787 -15.72623 -15.66317 -15.15827 -14.85798 -14.63059 -14.53290 -13.99265 -13.71960 -13.48368 -13.23995 -13.06258 -12.53417 -12.47526 -11.97383 -11.86917 -11.75722 -11.49501 -11.35075 -11.26343 -11.09668 -10.88164 -10.85099 -10.64856 -10.59028 -10.43666 -10.31695 -10.12131 -9.73011 -9.43693 -9.08557 -8.39633 -8.34807 -7.16337 -5.99375 -3.99523 3.35629 3.41100 3.44866 3.54093 3.98862 4.45608 4.52901 4.65328 4.68071 4.85292 4.87893 5.00045 5.11789 5.20395 5.34196 5.36129 5.36693 5.40724 5.45896 5.59094 5.62855 5.67115 5.69633 5.76276 5.77401 5.81523 5.87395 5.94177 6.07093 6.12765 6.17006 6.23904 6.35032 6.54080 6.75668 7.02101 7.31049 7.34404 7.40120 7.84028 8.12199 8.21994 8.32168 8.59653 9.07871 9.64201 11.11831 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.026532 B = 0.003097 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.078558 B = 9040.296846 C = 9666.017457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.060 4.060 3 H 0.081 0.919 4 C 0.066 3.934 5 N -0.679 5.679 6 C 0.028 3.972 7 C 0.119 3.881 8 H 0.098 0.902 9 O -0.530 6.530 10 C 0.026 3.974 11 N -0.531 5.531 12 C 0.038 3.962 13 C 0.192 3.808 14 C -0.503 4.503 15 H 0.063 0.937 16 C 0.054 3.946 17 N -0.901 5.901 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.288 1.288 21 H -0.274 1.274 22 C -0.146 4.146 23 C -0.181 4.181 24 C -0.180 4.180 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.343 0.657 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.360 0.640 34 H 0.030 0.970 35 H 0.060 0.940 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.007 0.993 39 H 0.030 0.970 40 H -0.012 1.012 41 H 0.260 0.740 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.809 -3.998 -18.289 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 H 0.099 0.901 4 C -0.063 4.063 5 N -0.311 5.311 6 C -0.102 4.102 7 C 0.059 3.941 8 H 0.116 0.884 9 O -0.332 6.332 10 C -0.104 4.104 11 N -0.255 5.255 12 C -0.111 4.111 13 C 0.067 3.933 14 C -0.542 4.542 15 H 0.082 0.918 16 C -0.147 4.147 17 N -0.541 5.541 18 Si 0.726 3.274 19 H -0.206 1.206 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.165 4.165 23 C -0.217 4.217 24 C -0.217 4.217 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.163 0.837 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.205 0.795 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.025 0.975 39 H 0.048 0.952 40 H 0.005 0.995 41 H 0.070 0.930 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.589 -2.955 -18.388 20.947 hybrid contribution -0.596 -1.433 0.872 1.780 sum 8.993 -4.388 -17.516 20.173 Atomic orbital electron populations 1.21846 0.94993 1.01722 1.02071 1.20727 0.95650 0.99702 0.91758 0.90107 1.21954 1.00429 0.94335 0.89572 1.60386 1.20256 1.49650 1.00845 1.22705 1.00592 0.95945 0.90988 1.21841 0.99129 0.83102 0.90069 0.88403 1.86675 1.23603 1.26563 1.96405 1.22677 0.99118 0.95233 0.93363 1.62014 1.06897 1.54124 1.02424 1.22226 0.96234 0.97435 0.95200 1.19764 0.81474 0.95197 0.96833 1.21162 0.94660 1.17138 1.21191 0.91839 1.24990 0.96652 0.96037 0.97037 1.69956 1.03904 1.36581 1.43654 0.86495 0.78182 0.81288 0.81419 1.20577 1.21404 1.19882 1.22299 1.03612 0.99028 0.91555 1.23021 0.92397 1.02169 1.04161 1.22925 0.98189 1.03353 0.97220 0.92918 0.92022 0.92529 0.95607 0.91197 0.83727 0.94796 0.91095 0.79464 0.95196 0.92194 0.93736 0.90465 0.97483 0.95194 0.99466 0.93008 0.88098 0.88670 0.89106 0.89080 0.88737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.81 37.16 0.33 -1.06 16 2 C -0.06 -0.56 2.75 -90.62 -0.25 -0.81 16 3 H 0.08 0.85 7.90 -51.93 -0.41 0.44 16 4 C 0.07 0.69 5.13 -3.82 -0.02 0.67 16 5 N -0.68 -8.53 6.37 -113.78 -0.72 -9.25 16 6 C 0.03 0.36 5.35 -3.82 -0.02 0.34 16 7 C 0.12 1.98 3.24 -26.73 -0.09 1.89 16 8 H 0.10 1.92 6.78 -51.93 -0.35 1.56 16 9 O -0.53 -9.36 13.08 -35.23 -0.46 -9.82 16 10 C 0.03 0.46 4.66 -3.82 -0.02 0.44 16 11 N -0.53 -11.68 4.56 -244.37 -1.11 -12.79 16 12 C 0.04 0.75 9.37 60.06 0.56 1.31 16 13 C 0.19 5.10 4.55 -4.98 -0.02 5.08 16 14 C -0.50 -14.46 8.39 -34.44 -0.29 -14.75 16 15 H 0.06 1.82 7.16 -52.49 -0.38 1.44 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 18 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.15 -1.21 5.15 -90.62 -0.47 -1.68 16 23 C -0.18 -1.38 10.18 -26.73 -0.27 -1.65 16 24 C -0.18 -1.35 9.73 -26.73 -0.26 -1.61 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.62 6.68 -51.93 -0.35 0.28 16 27 H 0.06 0.49 7.29 -51.93 -0.38 0.11 16 28 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.34 4.46 6.98 -39.29 -0.27 4.18 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.36 5.02 9.05 45.56 0.41 5.44 16 34 H 0.03 0.54 8.00 -51.93 -0.42 0.12 16 35 H 0.06 0.91 7.94 -51.93 -0.41 0.49 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.66 6.66 -51.93 -0.35 1.31 16 38 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 39 H 0.03 0.85 6.63 -51.93 -0.34 0.50 16 40 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.10 0.81 8.11 -51.93 -0.42 0.39 16 43 H 0.09 0.74 8.05 -51.93 -0.42 0.32 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.71 7.61 -51.92 -0.39 0.31 16 LS Contribution 365.42 15.07 5.51 5.51 Total: -1.00 -31.19 365.42 -9.83 -41.02 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.84 Total: 5.03 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -0.91 Total: -10.37 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -1.10 Total: -48.42 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -0.46 Total: -9.82 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.19 -9.83 -41.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591240786.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.667 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds