Wall clock time and date at job start Mon Mar 30 2020 01:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46848 * 2 1 4 4 C 1.53003 * 109.47209 * 119.99480 * 2 1 3 5 5 C 1.53507 * 114.16847 * 60.00429 * 4 2 1 6 6 N 1.47482 * 87.93563 * 139.66762 * 5 4 2 7 7 C 1.46894 * 111.00155 * 221.29619 * 6 5 4 8 8 C 1.53001 * 109.46989 * 169.99779 * 7 6 5 9 9 H 1.08991 * 109.47469 * 304.99731 * 8 7 6 10 10 O 1.42899 * 109.46965 * 65.00290 * 8 7 6 11 11 C 1.53006 * 109.47006 * 185.00023 * 8 7 6 12 12 N 1.46902 * 109.46878 * 178.51161 * 11 8 7 13 13 C 1.46903 * 110.99775 * 164.01143 * 12 11 8 14 14 C 1.46897 * 110.99870 * 287.96111 * 12 11 8 15 15 C 1.50698 * 109.47187 * 170.00071 * 14 12 11 16 16 H 1.08002 * 119.99974 * 0.02562 * 15 14 12 17 17 C 1.37876 * 120.00563 * 179.97438 * 15 14 12 18 18 N 1.31512 * 120.00374 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99335 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47173 * 90.00040 * 19 17 15 21 21 H 1.48507 * 109.46902 * 209.99826 * 19 17 15 22 22 H 1.48500 * 109.47482 * 329.99552 * 19 17 15 23 23 C 1.47481 * 87.83399 * 332.98663 * 6 5 4 24 24 H 1.09002 * 109.47010 * 300.00148 * 1 2 3 25 25 H 1.08995 * 109.47196 * 60.00416 * 1 2 3 26 26 H 1.08998 * 109.46988 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47333 * 239.99788 * 2 1 3 28 28 H 1.08995 * 109.46882 * 299.99776 * 3 2 1 29 29 H 1.08994 * 109.47327 * 59.99784 * 3 2 1 30 30 H 1.09003 * 109.46773 * 180.02562 * 3 2 1 31 31 H 1.08997 * 113.38641 * 286.92127 * 4 2 1 32 32 H 1.09004 * 113.47717 * 24.90182 * 5 4 2 33 33 H 1.08996 * 113.47836 * 254.43762 * 5 4 2 34 34 H 1.09000 * 109.47515 * 49.99914 * 7 6 5 35 35 H 1.09005 * 109.47405 * 289.99816 * 7 6 5 36 36 H 0.96696 * 114.00274 * 59.99701 * 10 8 7 37 37 H 1.09002 * 109.47115 * 298.50890 * 11 8 7 38 38 H 1.08996 * 109.47293 * 58.51285 * 11 8 7 39 39 H 1.08997 * 109.47125 * 65.47984 * 13 12 11 40 40 H 1.09000 * 109.46901 * 185.48257 * 13 12 11 41 41 H 1.09006 * 109.47036 * 305.47799 * 13 12 11 42 42 H 1.08994 * 109.47285 * 290.00430 * 14 12 11 43 43 H 1.09001 * 109.47312 * 50.00415 * 14 12 11 44 44 H 0.97002 * 119.99642 * 180.02562 * 18 17 15 45 45 H 1.09003 * 113.47301 * 141.76793 * 23 6 5 46 46 H 1.09000 * 113.47928 * 272.24154 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5894 -2.1845 1.3583 6 7 2.9424 -2.5090 1.8473 7 6 3.4290 -3.7630 1.2569 8 6 4.9130 -3.9391 1.5851 9 1 5.4652 -3.0598 1.2538 10 8 5.0730 -4.0986 2.9961 11 6 5.4503 -5.1791 0.8675 12 7 6.8834 -5.3280 1.1540 13 6 7.3510 -6.6781 0.8125 14 6 7.6697 -4.3052 0.4516 15 6 9.0902 -4.3305 0.9543 16 1 9.3799 -5.0361 1.7189 17 6 10.0202 -3.4535 0.4376 18 7 11.2599 -3.4760 0.8760 19 14 9.5192 -2.2335 -0.8853 20 1 9.0540 -0.9756 -0.2480 21 1 10.6847 -1.9442 -1.7589 22 1 8.4207 -2.8109 -1.7009 23 6 3.4348 -1.3427 1.0909 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4426 -0.0005 31 1 1.9097 -0.1447 2.1651 32 1 1.3549 -2.6395 0.3959 33 1 0.8089 -2.3443 2.1021 34 1 3.2975 -3.7305 0.1753 35 1 2.8644 -4.6006 1.6665 36 1 4.6074 -4.8635 3.3608 37 1 4.9160 -6.0620 1.2183 38 1 5.3042 -5.0689 -0.2070 39 1 7.2762 -6.8268 -0.2647 40 1 8.3892 -6.7926 1.1239 41 1 6.7344 -7.4166 1.3249 42 1 7.6594 -4.5105 -0.6188 43 1 7.2361 -3.3225 0.6372 44 1 11.9140 -2.8587 0.5126 45 1 4.2182 -0.7888 1.6083 46 1 3.6928 -1.5729 0.0571 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591241797.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:46 Heat of formation + Delta-G solvation = -18.138662 kcal Electronic energy + Delta-G solvation = -21664.030886 eV Core-core repulsion = 18589.636359 eV Total energy + Delta-G solvation = -3074.394526 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.56795 -37.82019 -35.68169 -34.92652 -32.41586 -30.95836 -28.38955 -27.74690 -27.62958 -25.73288 -24.95755 -23.22605 -21.80025 -20.60339 -19.94657 -19.74472 -16.95857 -16.23700 -15.93833 -15.83602 -15.06265 -14.93980 -14.65226 -14.39552 -14.11588 -13.65911 -13.35442 -13.19517 -12.99283 -12.85053 -12.66764 -12.41528 -12.31727 -11.91867 -11.58077 -11.52575 -11.31720 -11.26506 -11.07624 -10.87292 -10.77766 -10.61235 -10.48831 -10.37365 -10.13823 -9.87452 -9.50922 -9.17950 -8.87562 -8.53560 -7.32573 -6.01978 -3.98426 3.28832 3.35723 3.36262 3.85483 4.17220 4.43598 4.45068 4.55310 4.75992 4.81959 4.99680 5.07267 5.13578 5.15884 5.27418 5.29751 5.34938 5.39972 5.42180 5.51447 5.53741 5.59513 5.61582 5.63142 5.67412 5.78446 5.86736 5.91596 5.94192 6.01604 6.04107 6.17251 6.23642 6.25246 6.43885 6.67428 6.85522 6.96624 7.00301 7.61947 7.89923 8.05475 8.20854 8.69490 9.07506 9.59752 11.11443 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.017594 B = 0.004679 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.089480 B = 5983.252535 C = 7120.677387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.147 4.147 4 C -0.109 4.109 5 C 0.000 4.000 6 N -0.457 5.457 7 C -0.012 4.012 8 C 0.121 3.879 9 H 0.097 0.903 10 O -0.529 6.529 11 C 0.022 3.978 12 N -0.521 5.521 13 C 0.039 3.961 14 C 0.162 3.838 15 C -0.505 4.505 16 H 0.081 0.919 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.872 3.128 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.270 1.270 23 C 0.000 4.000 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.362 0.638 37 H 0.065 0.935 38 H 0.028 0.972 39 H 0.010 0.990 40 H 0.080 0.920 41 H 0.046 0.954 42 H -0.015 1.015 43 H 0.023 0.977 44 H 0.263 0.737 45 H 0.087 0.913 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.676 3.718 -2.727 23.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C -0.204 4.204 4 C -0.128 4.128 5 C -0.129 4.129 6 N -0.178 5.178 7 C -0.142 4.142 8 C 0.061 3.939 9 H 0.115 0.885 10 O -0.332 6.332 11 C -0.107 4.107 12 N -0.244 5.244 13 C -0.109 4.109 14 C 0.036 3.964 15 C -0.543 4.543 16 H 0.099 0.901 17 C -0.133 4.133 18 N -0.540 5.540 19 Si 0.700 3.300 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.195 1.195 23 C -0.129 4.129 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.207 0.793 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.029 0.971 40 H 0.098 0.902 41 H 0.065 0.935 42 H 0.003 0.997 43 H 0.041 0.959 44 H 0.073 0.927 45 H 0.105 0.895 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.893 4.296 -1.600 22.368 hybrid contribution -0.685 -0.029 -2.597 2.686 sum -22.578 4.267 -4.196 23.357 Atomic orbital electron populations 1.21800 0.95072 1.01697 1.01666 1.21104 0.95810 0.96508 0.97206 1.21810 1.01421 0.95554 1.01608 1.22814 0.95992 0.95015 0.98931 1.23871 0.94121 0.95449 0.99479 1.68965 1.03358 1.01099 1.44407 1.23443 0.98449 0.94558 0.97703 1.21799 0.91462 0.98182 0.82503 0.88506 1.86699 1.75547 1.50909 1.20004 1.22765 0.92342 0.98095 0.97536 1.61854 0.99998 1.03784 1.58802 1.22235 1.02099 0.89556 0.97033 1.20217 0.94559 0.90492 0.91130 1.21024 0.91089 1.19817 1.22401 0.90082 1.24888 0.94873 0.97037 0.96520 1.69892 1.02689 1.38065 1.43336 0.86907 0.78304 0.82330 0.82505 1.20049 1.21152 1.19472 1.23922 0.97911 0.93342 0.97761 0.92587 0.92845 0.92705 0.91346 0.92845 0.92588 0.92394 0.88058 0.91708 0.90022 0.93649 0.90416 0.79300 0.91649 0.95407 0.97145 0.90174 0.93519 0.99735 0.95889 0.92705 0.89477 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.00 37.16 0.33 -0.69 16 2 C -0.09 -0.73 2.73 -90.61 -0.25 -0.97 16 3 C -0.15 -1.19 9.19 37.16 0.34 -0.85 16 4 C -0.11 -1.05 3.45 -90.09 -0.31 -1.36 16 5 C 0.00 0.00 6.36 -7.55 -0.05 -0.05 16 6 N -0.46 -5.86 6.36 -244.63 -1.56 -7.41 16 7 C -0.01 -0.15 4.46 -3.83 -0.02 -0.17 16 8 C 0.12 1.97 3.07 -26.73 -0.08 1.89 16 9 H 0.10 1.85 5.96 -51.93 -0.31 1.54 16 10 O -0.53 -9.36 13.18 -35.23 -0.46 -9.82 16 11 C 0.02 0.38 4.63 -3.82 -0.02 0.36 16 12 N -0.52 -11.18 4.60 -244.37 -1.12 -12.31 16 13 C 0.04 0.76 9.32 60.07 0.56 1.32 16 14 C 0.16 4.05 3.64 -4.98 -0.02 4.03 16 15 C -0.51 -14.77 9.09 -34.44 -0.31 -15.09 16 16 H 0.08 2.58 7.34 -52.49 -0.39 2.20 16 17 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 18 N -0.90 -28.12 13.96 55.43 0.77 -27.34 16 19 Si 0.87 21.87 27.47 -169.99 -4.67 17.20 16 20 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 23 C 0.00 -0.01 6.51 -7.54 -0.05 -0.05 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.38 7.48 -51.93 -0.39 -0.01 16 27 H 0.07 0.60 7.90 -51.93 -0.41 0.19 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.60 7.73 -51.93 -0.40 0.20 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.54 7.56 -51.93 -0.39 0.15 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.36 4.94 9.05 45.56 0.41 5.35 16 37 H 0.07 0.94 7.88 -51.93 -0.41 0.53 16 38 H 0.03 0.46 8.05 -51.93 -0.42 0.04 16 39 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 40 H 0.08 1.73 6.90 -51.93 -0.36 1.37 16 41 H 0.05 0.76 7.97 -51.93 -0.41 0.35 16 42 H -0.01 -0.38 7.17 -51.93 -0.37 -0.75 16 43 H 0.02 0.58 5.81 -51.93 -0.30 0.28 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 45 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.07 0.81 7.49 -51.93 -0.39 0.43 16 LS Contribution 357.25 15.07 5.38 5.38 Total: -1.00 -32.57 357.25 -9.55 -42.12 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.93 Total: 1.89 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 0.03 Total: -9.71 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -1.91 Total: -47.07 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -0.46 Total: -9.82 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.57 -9.55 -42.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591241797.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.983 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds