Wall clock time and date at job start Mon Mar 30 2020 00:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99755 * 2 1 4 4 C 1.53002 * 109.46649 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.87160 * 173.98976 * 4 3 2 6 6 C 1.54317 * 110.01817 * 52.88610 * 4 3 2 7 7 C 1.55149 * 102.94706 * 218.32033 * 6 4 3 8 8 C 1.54698 * 101.67789 * 35.32974 * 7 6 4 9 9 N 1.47026 * 109.88155 * 294.99743 * 4 3 2 10 10 C 1.34777 * 125.64950 * 298.48287 * 9 4 3 11 11 O 1.21284 * 120.00069 * 359.97438 * 10 9 4 12 12 C 1.50699 * 120.00049 * 179.97438 * 10 9 4 13 13 H 1.09002 * 109.46959 * 319.99772 * 12 10 9 14 14 N 1.46899 * 109.47244 * 199.99894 * 12 10 9 15 15 C 1.52997 * 109.47078 * 79.99684 * 12 10 9 16 16 C 1.53004 * 109.47236 * 184.99974 * 15 12 10 17 17 C 1.50703 * 109.47376 * 180.02562 * 16 15 12 18 18 H 1.07998 * 119.99776 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00099 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99813 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99955 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46904 * 90.00279 * 21 19 17 23 23 H 1.48501 * 109.47144 * 210.00274 * 21 19 17 24 24 H 1.48493 * 109.47125 * 330.00250 * 21 19 17 25 25 H 1.09008 * 109.46960 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46931 * 299.99100 * 1 2 3 27 27 H 1.08993 * 109.47467 * 59.99657 * 1 2 3 28 28 H 1.08997 * 109.46948 * 60.00642 * 3 2 1 29 29 H 1.08998 * 109.47449 * 300.00147 * 3 2 1 30 30 H 1.09008 * 110.71851 * 336.68231 * 6 4 3 31 31 H 1.09000 * 110.72006 * 99.77342 * 6 4 3 32 32 H 1.08997 * 111.00916 * 153.57247 * 7 6 4 33 33 H 1.09005 * 111.00048 * 277.38900 * 7 6 4 34 34 H 1.08995 * 110.38977 * 204.36487 * 8 7 6 35 35 H 1.08998 * 110.23478 * 82.11645 * 8 7 6 36 36 H 1.00903 * 110.99833 * 299.99603 * 14 12 10 37 37 H 1.00901 * 111.00152 * 63.94840 * 14 12 10 38 38 H 1.09001 * 109.47630 * 305.00104 * 15 12 10 39 39 H 1.09004 * 109.47346 * 65.00234 * 15 12 10 40 40 H 1.09001 * 109.46917 * 300.00567 * 16 15 12 41 41 H 1.09004 * 109.46741 * 59.99889 * 16 15 12 42 42 H 0.96995 * 119.99701 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9852 2.1717 -0.1080 6 6 3.9924 0.2709 -1.1572 7 6 5.1672 -0.5241 -0.5288 8 6 4.6829 -0.6973 0.9302 9 7 3.9882 0.5624 1.2522 10 6 3.8037 1.0636 2.4896 11 8 3.2199 2.1165 2.6366 12 6 4.3228 0.3158 3.6906 13 1 4.1553 -0.7525 3.5536 14 7 3.6157 0.7719 4.8947 15 6 5.8214 0.5811 3.8479 16 6 6.3736 -0.2743 4.9901 17 6 7.8495 -0.0125 5.1455 18 1 8.3441 0.6936 4.4951 19 6 8.5682 -0.6738 6.1188 20 7 7.9657 -1.5333 6.9112 21 14 10.3978 -0.3499 6.3110 22 1 10.6049 0.7671 7.2675 23 1 11.0656 -1.5724 6.8254 24 1 10.9773 0.0133 4.9929 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.6886 1.8463 0.8900 29 1 1.6885 1.8464 -0.8899 30 1 3.1889 -0.4015 -1.4580 31 1 4.3346 0.8642 -2.0052 32 1 5.2914 -1.4900 -1.0183 33 1 6.0920 0.0516 -0.5648 34 1 5.5324 -0.8434 1.5975 35 1 3.9944 -1.5392 1.0015 36 1 3.7555 1.7601 5.0436 37 1 2.6328 0.5496 4.8429 38 1 6.3350 0.3252 2.9212 39 1 5.9821 1.6354 4.0732 40 1 5.8599 -0.0184 5.9168 41 1 6.2129 -1.3286 4.7648 42 1 8.4714 -1.9987 7.5956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591625980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:13 Heat of formation + Delta-G solvation = -92.060058 kcal Electronic energy + Delta-G solvation = -21723.211719 eV Core-core repulsion = 18509.778626 eV Total energy + Delta-G solvation = -3213.433093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.33059 -38.19849 -36.97359 -35.17081 -32.77690 -31.62668 -30.80217 -30.04664 -26.90935 -26.39063 -25.17469 -23.92731 -22.27371 -21.03163 -20.07015 -18.84207 -17.31147 -16.80984 -16.21796 -16.07598 -15.75288 -15.39102 -15.34171 -14.47872 -14.30194 -14.10269 -13.57482 -13.48899 -13.10597 -12.91119 -12.44146 -12.25742 -12.18891 -11.91666 -11.68919 -11.50831 -11.27494 -10.90797 -10.88850 -10.80439 -10.61263 -10.50499 -10.09790 -9.77478 -9.71151 -9.33102 -8.97654 -8.54637 -8.31662 -8.16250 -5.91735 -3.93828 2.83650 3.09208 3.36264 3.42438 3.45284 3.60891 4.42397 4.51072 4.52109 4.76831 4.93622 5.02654 5.06238 5.13263 5.18165 5.20597 5.25241 5.39414 5.43796 5.46335 5.60145 5.62573 5.68137 5.77898 5.83148 5.86643 5.92381 6.16648 6.36708 6.52351 6.70428 6.96701 7.12243 7.45446 7.67868 7.78671 7.84016 7.98765 8.15815 8.35231 8.50830 9.14191 9.69204 11.19192 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027190 B = 0.004283 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.548878 B = 6536.589310 C = 7047.712317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.049 3.951 4 C 0.137 3.863 5 H 0.085 0.915 6 C -0.125 4.125 7 C -0.131 4.131 8 C 0.096 3.904 9 N -0.606 5.606 10 C 0.502 3.498 11 O -0.559 6.559 12 C 0.083 3.917 13 H 0.096 0.904 14 N -0.806 5.806 15 C -0.095 4.095 16 C 0.032 3.968 17 C -0.522 4.522 18 H 0.052 0.948 19 C 0.058 3.942 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.347 0.653 37 H 0.333 0.667 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.035 0.965 41 H 0.013 0.987 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.263 1.933 -17.326 21.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C -0.028 4.028 4 C 0.033 3.967 5 H 0.103 0.897 6 C -0.163 4.163 7 C -0.169 4.169 8 C -0.027 4.027 9 N -0.340 5.340 10 C 0.290 3.710 11 O -0.438 6.438 12 C -0.033 4.033 13 H 0.114 0.886 14 N -0.334 5.334 15 C -0.133 4.133 16 C -0.005 4.005 17 C -0.560 4.560 18 H 0.070 0.930 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.200 1.200 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.161 0.839 37 H 0.145 0.855 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.031 0.969 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.961 1.727 -16.586 20.522 hybrid contribution 0.198 1.011 -0.588 1.186 sum -11.763 2.738 -17.174 20.996 Atomic orbital electron populations 1.22705 0.81404 1.02530 0.99759 1.87871 1.19253 1.27643 1.95364 1.22893 0.93882 0.85045 1.01028 1.21638 0.92096 0.97839 0.85144 0.89723 1.22629 0.98802 0.98574 0.96324 1.22714 0.98148 1.01185 0.94876 1.22403 0.97087 0.86452 0.96723 1.48598 1.56688 1.23647 1.05052 1.22456 0.78358 0.85913 0.84266 1.90611 1.43736 1.23678 1.85748 1.21793 0.97840 0.99005 0.84676 0.88562 1.59023 1.15282 1.23570 1.35523 1.21669 0.88558 1.01627 1.01481 1.19013 0.94707 0.93830 0.92976 1.21278 0.94315 1.23930 1.16497 0.93018 1.24985 0.98121 0.95290 0.95892 1.69975 1.35810 1.27226 1.20158 0.86658 0.85817 0.77613 0.78260 1.20751 1.21294 1.20006 0.89732 0.94261 0.94366 0.91762 0.92933 0.89471 0.90480 0.89725 0.90542 0.89252 0.91079 0.83927 0.85543 0.92785 0.92933 0.94701 0.96878 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -4.60 9.47 -35.23 -0.33 -4.94 16 3 C 0.05 0.58 5.60 37.16 0.21 0.79 16 4 C 0.14 1.66 3.26 -66.95 -0.22 1.44 16 5 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 6 C -0.13 -1.17 6.37 -24.90 -0.16 -1.33 16 7 C -0.13 -1.27 7.07 -24.70 -0.17 -1.44 16 8 C 0.10 1.18 6.38 -2.65 -0.02 1.17 16 9 N -0.61 -8.66 3.02 -163.16 -0.49 -9.15 16 10 C 0.50 8.55 6.87 -10.99 -0.08 8.47 16 11 O -0.56 -10.69 15.21 5.55 0.08 -10.60 16 12 C 0.08 1.47 2.43 -68.87 -0.17 1.31 16 13 H 0.10 1.68 7.68 -51.93 -0.40 1.28 16 14 N -0.81 -14.29 8.44 -5.66 -0.05 -14.34 16 15 C -0.10 -1.98 4.64 -26.73 -0.12 -2.10 16 16 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 17 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 18 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 21 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.92 6.71 -51.93 -0.35 0.57 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.83 6.97 -51.92 -0.36 0.47 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.20 6.03 -51.93 -0.31 0.89 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.35 6.19 8.58 -39.29 -0.34 5.85 16 37 H 0.33 5.20 9.06 -39.29 -0.36 4.85 16 38 H 0.05 1.06 6.56 -51.93 -0.34 0.72 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.03 0.98 7.75 -51.93 -0.40 0.58 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 338.30 15.07 5.10 5.10 Total: -1.00 -32.76 338.30 -7.19 -39.95 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.05 Total: 6.65 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -0.16 Total: -3.16 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.20 Total: -49.78 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.25 Total: -15.54 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.76 -7.19 -39.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591625980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.111 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds