Wall clock time and date at job start Mon Mar 30 2020 01:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46957 * 2 1 4 4 H 1.08997 * 109.46650 * 177.96369 * 3 2 1 5 5 C 1.50705 * 109.46865 * 57.96570 * 3 2 1 6 6 H 1.07999 * 119.99695 * 239.99711 * 5 3 2 7 7 C 1.37874 * 119.99875 * 60.00488 * 5 3 2 8 8 N 1.31515 * 120.00085 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99777 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47061 * 89.99812 * 9 7 5 11 11 H 1.48503 * 109.46906 * 209.99571 * 9 7 5 12 12 H 1.48494 * 109.47257 * 329.99606 * 9 7 5 13 13 N 1.46898 * 109.47086 * 297.96747 * 3 2 1 14 14 C 1.46894 * 110.99938 * 273.75021 * 13 3 2 15 15 C 1.53005 * 109.47193 * 174.95517 * 14 13 3 16 16 N 1.46898 * 109.46919 * 179.97438 * 15 14 13 17 17 C 1.47015 * 111.00513 * 293.63611 * 16 15 14 18 18 C 1.53092 * 109.26036 * 177.61234 * 17 16 15 19 19 H 1.09002 * 109.54095 * 296.88734 * 18 17 16 20 20 C 1.53007 * 109.50721 * 176.78404 * 18 17 16 21 21 O 1.43014 * 109.26055 * 56.84469 * 18 17 16 22 22 C 1.43009 * 113.73927 * 301.33311 * 21 18 17 23 23 H 1.09005 * 109.53909 * 178.63064 * 22 21 18 24 24 C 1.53004 * 109.50860 * 298.73221 * 22 21 18 25 25 C 1.47013 * 110.99803 * 169.99883 * 16 15 14 26 26 H 1.08997 * 109.47253 * 54.44605 * 1 2 3 27 27 H 1.09000 * 109.46877 * 174.45243 * 1 2 3 28 28 H 1.09000 * 109.47302 * 294.44893 * 1 2 3 29 29 H 1.09002 * 109.46787 * 120.00169 * 2 1 3 30 30 H 1.09001 * 109.46710 * 240.00207 * 2 1 3 31 31 H 0.97005 * 119.99559 * 180.02562 * 8 7 5 32 32 H 1.00896 * 111.00098 * 149.79365 * 13 3 2 33 33 H 1.08998 * 109.47040 * 294.95609 * 14 13 3 34 34 H 1.08999 * 109.47490 * 54.95355 * 14 13 3 35 35 H 1.08998 * 109.47202 * 299.99992 * 15 14 13 36 36 H 1.08999 * 109.46747 * 60.00025 * 15 14 13 37 37 H 1.08997 * 109.50234 * 297.54661 * 17 16 15 38 38 H 1.08996 * 109.50347 * 57.67109 * 17 16 15 39 39 H 1.08995 * 109.46594 * 300.21262 * 20 18 17 40 40 H 1.08997 * 109.46703 * 60.21453 * 20 18 17 41 41 H 1.09000 * 109.47105 * 180.21402 * 20 18 17 42 42 H 1.09001 * 109.47518 * 179.78375 * 24 22 21 43 43 H 1.09001 * 109.46972 * 299.78678 * 24 22 21 44 44 H 1.09003 * 109.46933 * 59.78415 * 24 22 21 45 45 H 1.08994 * 109.51002 * 302.33332 * 25 16 15 46 46 H 1.09004 * 109.50760 * 62.46354 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1294 1.4427 0.0365 5 6 1.4968 2.1673 1.2045 6 1 0.8798 3.0441 1.0743 7 6 1.7878 1.7112 2.4727 8 7 2.5390 0.6434 2.6312 9 14 1.1152 2.6100 3.9657 10 1 -0.2060 2.0400 4.3329 11 1 2.0559 2.4522 5.1039 12 1 0.9609 4.0522 3.6473 13 7 1.5908 2.1207 -1.2232 14 6 2.5280 1.8858 -2.3297 15 6 1.9655 2.4995 -3.6135 16 7 2.9030 2.2651 -4.7199 17 6 4.1594 2.9992 -4.5104 18 6 5.1271 2.6803 -5.6531 19 1 5.3725 1.6184 -5.6374 20 6 6.4062 3.5028 -5.4839 21 8 4.5092 3.0093 -6.9002 22 6 3.2835 2.3118 -7.1371 23 1 2.8610 2.6305 -8.0901 24 6 3.5516 0.8059 -7.1752 25 6 2.2970 2.6270 -6.0095 26 1 -0.3633 0.5975 -0.8360 27 1 -0.3633 -1.0229 -0.0993 28 1 -0.3634 0.4253 0.9355 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 2.7434 0.3223 3.5234 32 1 1.4614 3.1083 -1.0624 33 1 3.4879 2.3467 -2.0969 34 1 2.6643 0.8134 -2.4691 35 1 1.0056 2.0386 -3.8463 36 1 1.8294 3.5719 -3.4741 37 1 3.9567 4.0700 -4.4933 38 1 4.6037 2.6971 -3.5621 39 1 6.1600 4.5644 -5.4981 40 1 6.8766 3.2515 -4.5333 41 1 7.0932 3.2781 -6.2998 42 1 2.6163 0.2747 -7.3520 43 1 4.2539 0.5822 -7.9782 44 1 3.9755 0.4881 -6.2227 45 1 1.3819 2.0532 -6.1554 46 1 2.0646 3.6919 -6.0164 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595529098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:47 Heat of formation + Delta-G solvation = -50.533646 kcal Electronic energy + Delta-G solvation = -21862.167597 eV Core-core repulsion = 18786.368319 eV Total energy + Delta-G solvation = -3075.799278 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.05806 -36.84787 -35.49176 -33.50069 -32.64837 -30.96236 -30.16797 -27.99722 -26.97517 -25.83495 -23.94432 -23.08400 -22.54763 -20.94464 -19.51858 -18.98652 -16.62111 -16.50188 -16.26374 -15.60205 -14.92373 -14.88538 -14.60541 -14.30409 -14.08541 -13.40880 -13.16374 -12.91714 -12.73908 -12.54292 -12.37715 -12.08516 -11.99705 -11.80396 -11.75914 -11.60964 -11.21656 -11.00166 -10.89023 -10.79459 -10.66267 -10.36264 -10.33968 -10.00722 -9.74567 -9.54696 -9.33170 -8.76681 -8.47189 -8.31818 -7.23083 -6.01851 -4.07288 3.29043 3.35860 3.38262 3.59851 3.80680 4.40406 4.68280 4.76964 4.88901 4.96422 5.09126 5.24212 5.27958 5.29327 5.37232 5.41996 5.49795 5.52416 5.62297 5.69629 5.77371 5.83255 5.84116 5.96023 5.98303 6.04034 6.23905 6.38265 6.44256 6.57326 6.73853 6.87168 7.00353 7.07545 7.14779 7.26105 7.33658 7.51807 7.74907 7.80295 7.85994 8.26564 8.39189 8.67584 9.02001 9.57482 11.04157 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.028800 B = 0.003739 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.973123 B = 7486.164881 C = 7884.211706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C 0.218 3.782 4 H -0.001 1.001 5 C -0.513 4.513 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.686 5.686 14 C 0.067 3.933 15 C 0.061 3.939 16 N -0.533 5.533 17 C 0.021 3.979 18 C 0.086 3.914 19 H 0.070 0.930 20 C -0.145 4.145 21 O -0.381 6.381 22 C 0.091 3.909 23 H 0.101 0.899 24 C -0.175 4.175 25 C 0.024 3.976 26 H 0.046 0.954 27 H 0.012 0.988 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.010 0.990 31 H 0.260 0.740 32 H 0.328 0.672 33 H 0.016 0.984 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.029 0.971 37 H 0.039 0.961 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.289 2.930 -17.243 17.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.111 3.889 4 H 0.017 0.983 5 C -0.552 4.552 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.317 5.317 14 C -0.063 4.063 15 C -0.066 4.066 16 N -0.258 5.258 17 C -0.107 4.107 18 C 0.029 3.971 19 H 0.088 0.912 20 C -0.202 4.202 21 O -0.300 6.300 22 C 0.033 3.967 23 H 0.119 0.881 24 C -0.233 4.233 25 C -0.104 4.104 26 H 0.065 0.935 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.029 0.971 31 H 0.070 0.930 32 H 0.145 0.855 33 H 0.034 0.966 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.134 1.925 -17.405 17.790 hybrid contribution 0.011 1.654 1.398 2.166 sum 3.145 3.580 -16.007 16.702 Atomic orbital electron populations 1.21431 0.97541 0.97096 1.01492 1.21419 0.95065 0.98205 0.99302 1.19093 0.93218 0.91626 0.85007 0.98303 1.21189 1.31623 1.11969 0.90404 0.92375 1.24879 0.95068 0.95030 0.98831 1.69894 1.37361 1.23109 1.22356 0.86586 0.78806 0.80065 0.82474 1.20628 1.21325 1.20017 1.60583 1.47661 1.15948 1.07552 1.21826 0.93399 1.00701 0.90402 1.22126 0.95582 0.98404 0.90524 1.62135 1.04923 1.56748 1.01990 1.22877 0.91449 0.96511 0.99873 1.22167 0.92358 0.99454 0.83168 0.91244 1.21751 0.95662 1.00438 1.02364 1.88002 1.37390 1.66721 1.37932 1.22232 0.84493 0.92585 0.97406 0.88078 1.22281 1.02327 0.95664 1.03003 1.22760 0.98104 0.99407 0.90133 0.93489 0.96889 0.93024 0.89728 0.97098 0.92974 0.85536 0.96626 0.91080 0.90065 0.95291 0.94247 0.89197 0.92013 0.90810 0.91739 0.91716 0.92622 0.90785 0.89649 0.94296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.46 37.16 0.35 -2.33 16 2 C -0.10 -2.47 5.58 -26.73 -0.15 -2.62 16 3 C 0.22 5.40 2.30 -68.86 -0.16 5.24 16 4 H 0.00 -0.02 7.84 -51.93 -0.41 -0.43 16 5 C -0.51 -13.70 7.34 -34.44 -0.25 -13.95 16 6 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -25.07 11.34 55.43 0.63 -24.44 16 9 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.69 -14.25 5.51 -107.95 -0.59 -14.84 16 14 C 0.07 1.20 5.39 -3.82 -0.02 1.18 16 15 C 0.06 0.91 5.26 -3.82 -0.02 0.89 16 16 N -0.53 -7.07 4.10 -234.32 -0.96 -8.03 16 17 C 0.02 0.27 4.72 -3.71 -0.02 0.25 16 18 C 0.09 1.00 3.02 -26.68 -0.08 0.92 16 19 H 0.07 0.81 6.49 -51.93 -0.34 0.48 16 20 C -0.14 -1.39 9.57 37.16 0.36 -1.04 16 21 O -0.38 -4.71 10.28 -35.23 -0.36 -5.07 16 22 C 0.09 0.96 3.92 -26.68 -0.10 0.86 16 23 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 24 C -0.18 -1.75 8.89 37.16 0.33 -1.42 16 25 C 0.02 0.28 5.06 -3.71 -0.02 0.26 16 26 H 0.05 1.02 7.50 -51.93 -0.39 0.64 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 29 H 0.08 2.29 6.13 -51.93 -0.32 1.97 16 30 H 0.01 0.24 7.43 -51.93 -0.39 -0.14 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.33 6.70 8.25 -39.29 -0.32 6.38 16 33 H 0.02 0.29 6.51 -51.93 -0.34 -0.05 16 34 H 0.07 1.36 7.40 -51.93 -0.38 0.98 16 35 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 36 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 1.20 6.38 -51.93 -0.33 0.87 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.86 6.12 -51.93 -0.32 0.54 16 45 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 46 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 348.74 15.07 5.26 5.26 Total: -1.00 -27.89 348.74 -9.45 -37.34 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -8.51 Total: 3.87 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 0.12 Total: -10.13 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.93 Total: -47.31 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.36 Total: -5.07 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.89 -9.45 -37.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595529098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.194 kcal (2) G-P(sol) polarization free energy of solvation -27.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds