Wall clock time and date at job start Mon Mar 30 2020 01:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53780 * 113.61566 * 2 1 4 4 C 1.53777 * 87.07980 * 219.93053 * 3 2 1 5 5 C 1.53005 * 113.61005 * 139.98132 * 4 3 2 6 6 N 1.46900 * 109.46765 * 176.53082 * 5 4 3 7 7 C 1.46903 * 111.00131 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47302 * 180.02562 * 7 6 5 9 9 H 1.08992 * 109.47135 * 59.99463 * 8 7 6 10 10 O 1.42897 * 109.46674 * 299.99470 * 8 7 6 11 11 C 1.53004 * 109.46799 * 179.97438 * 8 7 6 12 12 N 1.46898 * 109.46619 * 184.99872 * 11 8 7 13 13 C 1.46901 * 111.00443 * 66.04574 * 12 11 8 14 14 C 1.46906 * 110.99820 * 189.99887 * 12 11 8 15 15 C 1.50696 * 109.47351 * 169.99890 * 14 12 11 16 16 H 1.08007 * 119.99780 * 0.02562 * 15 14 12 17 17 C 1.37878 * 120.00506 * 180.02562 * 15 14 12 18 18 N 1.31515 * 119.99253 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00341 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47279 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47075 * 119.99817 * 19 17 15 22 22 H 1.48496 * 109.46942 * 240.00005 * 19 17 15 23 23 C 1.53782 * 87.17197 * 25.39138 * 4 3 2 24 24 H 1.09002 * 109.46447 * 59.99933 * 1 2 3 25 25 H 1.09001 * 109.47017 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46863 * 300.00299 * 1 2 3 27 27 H 1.09000 * 112.84596 * 131.19324 * 2 1 3 28 28 H 1.09009 * 113.61462 * 105.38112 * 3 2 1 29 29 H 1.08998 * 113.61165 * 334.48247 * 3 2 1 30 30 H 1.08999 * 113.61516 * 270.79460 * 4 3 2 31 31 H 1.09000 * 109.47142 * 56.53093 * 5 4 3 32 32 H 1.08998 * 109.47307 * 296.52634 * 5 4 3 33 33 H 1.00904 * 111.00509 * 56.04125 * 6 5 4 34 34 H 1.08996 * 109.47237 * 59.99345 * 7 6 5 35 35 H 1.09009 * 109.46499 * 299.99967 * 7 6 5 36 36 H 0.96701 * 114.00549 * 300.00026 * 10 8 7 37 37 H 1.08994 * 109.47270 * 64.99737 * 11 8 7 38 38 H 1.08999 * 109.47017 * 304.99614 * 11 8 7 39 39 H 1.09002 * 109.47401 * 183.95136 * 13 12 11 40 40 H 1.09001 * 109.46874 * 63.95149 * 13 12 11 41 41 H 1.09004 * 109.46970 * 303.95282 * 13 12 11 42 42 H 1.08997 * 109.46995 * 289.99871 * 14 12 11 43 43 H 1.09001 * 109.46848 * 49.99877 * 14 12 11 44 44 H 0.96999 * 119.99606 * 179.97438 * 18 17 15 45 45 H 1.09000 * 113.61255 * 89.15863 * 23 4 3 46 46 H 1.09000 * 113.60777 * 220.06004 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1461 1.4090 0.0000 4 6 3.1938 0.8655 -0.9857 5 6 3.5491 1.8463 -2.1050 6 7 4.6116 1.2715 -2.9408 7 6 4.9799 2.1879 -4.0282 8 6 6.0861 1.5557 -4.8753 9 1 5.7287 0.6164 -5.2971 10 8 7.2295 1.3054 -4.0556 11 6 6.4692 2.5101 -6.0082 12 7 7.4443 1.8557 -6.8908 13 6 6.8400 0.7118 -7.5868 14 6 8.0135 2.8136 -7.8483 15 6 9.1751 2.1762 -8.5661 16 1 9.4617 1.1609 -8.3346 17 6 9.8722 2.8891 -9.5184 18 7 9.5229 4.1252 -9.8007 19 14 11.3117 2.0988 -10.4087 20 1 11.4992 0.7116 -9.9128 21 1 11.0361 2.0704 -11.8676 22 1 12.5444 2.8862 -10.1530 23 6 2.1499 -0.1864 -1.3968 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9533 -0.6616 0.7559 28 1 2.5638 1.7030 0.9630 29 1 1.4952 2.1701 -0.4302 30 1 4.0725 0.4419 -0.4994 31 1 3.8959 2.7837 -1.6701 32 1 2.6670 2.0342 -2.7171 33 1 4.3386 0.3704 -3.3037 34 1 5.3368 3.1274 -3.6064 35 1 4.1077 2.3786 -4.6537 36 1 7.6015 2.0987 -3.6465 37 1 6.9089 3.4146 -5.5883 38 1 5.5788 2.7707 -6.5804 39 1 7.6009 0.2036 -8.1791 40 1 6.0444 1.0648 -8.2429 41 1 6.4263 0.0183 -6.8546 42 1 7.2512 3.0994 -8.5730 43 1 8.3579 3.6995 -7.3147 44 1 10.0135 4.6269 -10.4704 45 1 1.5002 0.1378 -2.2097 46 1 2.5708 -1.1785 -1.5598 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598728575.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:00 Heat of formation + Delta-G solvation = -39.062772 kcal Electronic energy + Delta-G solvation = -20661.652662 eV Core-core repulsion = 17586.350798 eV Total energy + Delta-G solvation = -3075.301864 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.63935 -38.13655 -35.86562 -34.75204 -32.49814 -30.96881 -29.37065 -27.22729 -26.59287 -25.97848 -24.89805 -23.10614 -21.47817 -20.92422 -20.11099 -19.66142 -16.62935 -16.43640 -15.94481 -15.67015 -15.15955 -14.83338 -14.61192 -14.46820 -14.16023 -13.85124 -13.57518 -13.21092 -13.08031 -12.78785 -12.71265 -12.53291 -11.97312 -11.87388 -11.66557 -11.33558 -11.18648 -11.06098 -10.89172 -10.86462 -10.73525 -10.63769 -10.43436 -10.29490 -10.24061 -9.94099 -9.51172 -9.05955 -8.46665 -8.42147 -7.17209 -6.01094 -4.01788 3.32791 3.39979 3.45894 3.88544 4.26821 4.35589 4.43362 4.46363 4.58180 4.80742 4.88838 5.04072 5.14913 5.18748 5.27873 5.30851 5.34761 5.40466 5.40828 5.45137 5.50507 5.56460 5.61542 5.64845 5.68728 5.73818 5.80629 5.84035 6.06073 6.06902 6.20232 6.27847 6.32718 6.44643 6.77524 6.91606 7.28647 7.29339 7.34396 7.82910 8.07557 8.17753 8.23925 8.57735 9.06632 9.62376 11.09982 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.056992 B = 0.002492 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.176780 B =11234.102870 C =11302.492839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.132 4.132 4 C -0.107 4.107 5 C 0.069 3.931 6 N -0.677 5.677 7 C 0.026 3.974 8 C 0.117 3.883 9 H 0.092 0.908 10 O -0.536 6.536 11 C 0.025 3.975 12 N -0.530 5.530 13 C 0.037 3.963 14 C 0.192 3.808 15 C -0.504 4.504 16 H 0.065 0.935 17 C 0.052 3.948 18 N -0.901 5.901 19 Si 0.899 3.101 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.137 4.137 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.026 0.974 33 H 0.340 0.660 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.368 0.632 37 H 0.070 0.930 38 H 0.026 0.974 39 H 0.074 0.926 40 H 0.008 0.992 41 H 0.046 0.954 42 H -0.011 1.011 43 H 0.028 0.972 44 H 0.260 0.740 45 H 0.077 0.923 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.129 -5.376 17.909 25.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 C -0.170 4.170 4 C -0.126 4.126 5 C -0.061 4.061 6 N -0.308 5.308 7 C -0.104 4.104 8 C 0.056 3.944 9 H 0.110 0.890 10 O -0.339 6.339 11 C -0.105 4.105 12 N -0.254 5.254 13 C -0.112 4.112 14 C 0.067 3.933 15 C -0.542 4.542 16 H 0.083 0.917 17 C -0.148 4.148 18 N -0.541 5.541 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.210 1.210 23 C -0.174 4.174 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.158 0.842 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.214 0.786 37 H 0.089 0.911 38 H 0.044 0.956 39 H 0.092 0.908 40 H 0.027 0.973 41 H 0.064 0.936 42 H 0.007 0.993 43 H 0.046 0.954 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.296 -5.801 18.299 25.181 hybrid contribution -0.664 0.663 -1.602 1.856 sum -16.961 -5.139 16.698 24.349 Atomic orbital electron populations 1.21724 0.95006 1.01572 1.01639 1.22472 0.95399 0.97628 0.97949 1.23012 0.97871 0.96626 0.99468 1.22534 0.97139 0.96535 0.96367 1.21958 0.92293 0.97791 0.94032 1.60348 1.41554 1.05768 1.23135 1.22731 0.98238 0.96849 0.92614 1.21880 0.85038 0.98544 0.88931 0.89045 1.86584 1.45170 1.36247 1.65938 1.22724 0.95137 0.97210 0.95441 1.62027 1.30616 1.10190 1.22551 1.22250 0.98005 0.94257 0.96655 1.19754 0.93981 0.90701 0.88839 1.21216 1.13479 1.00089 1.19437 0.91727 1.25009 0.97789 0.94933 0.97099 1.69973 1.41017 1.09626 1.33442 0.86424 0.82199 0.79553 0.79163 1.19601 1.21176 1.21016 1.23156 0.97977 0.99546 0.96720 0.92723 0.92760 0.92658 0.89404 0.91507 0.90238 0.88297 0.91151 0.95588 0.84189 0.90739 0.94851 0.78580 0.91126 0.95618 0.90772 0.97309 0.93559 0.99347 0.95351 0.93039 0.90406 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.72 37.16 0.36 -0.51 16 2 C -0.12 -0.79 4.35 -89.72 -0.39 -1.18 16 3 C -0.13 -0.93 7.20 -25.92 -0.19 -1.12 16 4 C -0.11 -0.87 3.89 -89.81 -0.35 -1.22 16 5 C 0.07 0.64 5.51 -3.82 -0.02 0.62 16 6 N -0.68 -7.48 6.37 -113.77 -0.72 -8.20 16 7 C 0.03 0.31 5.35 -3.82 -0.02 0.29 16 8 C 0.12 1.71 3.13 -26.73 -0.08 1.63 16 9 H 0.09 1.39 6.26 -51.93 -0.33 1.06 16 10 O -0.54 -8.74 13.15 -35.23 -0.46 -9.21 16 11 C 0.02 0.44 4.60 -3.82 -0.02 0.42 16 12 N -0.53 -11.71 4.70 -244.37 -1.15 -12.86 16 13 C 0.04 0.74 9.17 60.07 0.55 1.29 16 14 C 0.19 5.11 4.72 -4.97 -0.02 5.09 16 15 C -0.50 -14.46 8.52 -34.44 -0.29 -14.75 16 16 H 0.06 1.85 7.10 -52.48 -0.37 1.48 16 17 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 18 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 19 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 23 C -0.14 -1.03 7.20 -25.83 -0.19 -1.21 16 24 H 0.05 0.34 7.96 -51.93 -0.41 -0.08 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.03 0.24 7.87 -51.93 -0.41 -0.17 16 33 H 0.34 3.67 8.73 -39.29 -0.34 3.32 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.03 0.38 8.14 -51.92 -0.42 -0.04 16 36 H 0.37 5.05 9.05 45.56 0.41 5.47 16 37 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 38 H 0.03 0.45 8.12 -51.93 -0.42 0.02 16 39 H 0.07 1.60 6.86 -51.93 -0.36 1.24 16 40 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 41 H 0.05 0.80 6.21 -51.93 -0.32 0.48 16 42 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 43 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 45 H 0.08 0.59 7.75 -51.93 -0.40 0.19 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 364.87 15.07 5.50 5.50 Total: -1.00 -31.06 364.87 -9.86 -40.92 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.98 Total: 2.48 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -0.76 Total: -9.25 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -1.14 Total: -47.42 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.46 Total: -9.21 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.06 -9.86 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598728575.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.858 kcal (2) G-P(sol) polarization free energy of solvation -31.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds