Wall clock time and date at job start Mon Mar 30 2020 01:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46847 * 2 1 4 4 C 1.52999 * 109.47213 * 240.00263 * 2 1 3 5 5 C 1.50701 * 109.47074 * 64.99976 * 4 2 1 6 6 H 1.08000 * 120.00024 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99906 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99759 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99824 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47361 * 60.00156 * 9 7 5 11 11 H 1.48507 * 109.46888 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47679 * 299.99731 * 9 7 5 13 13 C 1.52993 * 109.47231 * 120.00033 * 2 1 3 14 14 N 1.46903 * 109.47310 * 295.00043 * 13 2 1 15 15 C 1.46900 * 111.00216 * 180.02562 * 14 13 2 16 16 C 1.52996 * 109.47010 * 180.02562 * 15 14 13 17 17 H 1.09001 * 109.47430 * 304.99933 * 16 15 14 18 18 O 1.42907 * 109.47374 * 65.00169 * 16 15 14 19 19 C 1.52999 * 109.46955 * 184.99655 * 16 15 14 20 20 N 1.46904 * 109.47093 * 180.02562 * 19 16 15 21 21 C 1.48566 * 110.99843 * 170.00382 * 20 19 16 22 22 C 1.54380 * 104.59262 * 200.95774 * 21 20 19 23 23 C 1.54264 * 105.06204 * 23.85280 * 22 21 20 24 24 C 1.48556 * 111.00162 * 54.58137 * 20 19 16 25 25 H 1.09000 * 109.47157 * 299.99871 * 1 2 3 26 26 H 1.09006 * 109.47285 * 59.99965 * 1 2 3 27 27 H 1.09001 * 109.47042 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47418 * 184.99593 * 4 2 1 29 29 H 1.09001 * 109.46993 * 304.99881 * 4 2 1 30 30 H 0.97002 * 119.99733 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47491 * 175.00504 * 13 2 1 32 32 H 1.09000 * 109.47151 * 54.99997 * 13 2 1 33 33 H 1.00904 * 110.99874 * 56.04150 * 14 13 2 34 34 H 1.08999 * 109.47335 * 59.99763 * 15 14 13 35 35 H 1.09005 * 109.46708 * 299.99768 * 15 14 13 36 36 H 0.96704 * 114.00097 * 59.99694 * 18 16 15 37 37 H 1.09001 * 109.47259 * 59.99955 * 19 16 15 38 38 H 1.08998 * 109.47275 * 299.99831 * 19 16 15 39 39 H 1.08999 * 110.41049 * 319.73313 * 21 20 19 40 40 H 1.08999 * 110.41330 * 82.18261 * 21 20 19 41 41 H 1.09005 * 110.32530 * 142.74561 * 22 21 20 42 42 H 1.08995 * 110.32857 * 264.95872 * 22 21 20 43 43 H 1.08995 * 110.32483 * 241.10627 * 23 22 21 44 44 H 1.09000 * 110.32872 * 118.89474 * 23 22 21 45 45 H 1.08997 * 110.41166 * 277.81957 * 24 20 19 46 46 H 1.09001 * 110.40893 * 40.14601 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9924 -0.4021 -3.7284 8 7 2.6755 -1.5191 -3.8512 9 14 1.4976 0.5624 -5.2497 10 1 2.0897 1.9228 -5.1876 11 1 1.9927 -0.1376 -6.4622 12 1 0.0176 0.6688 -5.3087 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1258 -0.6265 3.6671 16 6 1.7024 0.1909 4.8892 17 1 2.0612 1.2147 4.7836 18 8 0.2768 0.1937 4.9898 19 6 2.3014 -0.4319 6.1518 20 7 1.8943 0.3526 7.3252 21 6 2.2523 -0.3490 8.5849 22 6 1.3278 0.2736 9.6531 23 6 0.1199 0.8233 8.8666 24 6 0.4162 0.4866 7.3894 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1263 -0.7994 -1.2057 29 1 1.6054 -1.7197 -1.2952 30 1 2.9228 -1.8420 -4.7319 31 1 3.1263 -0.7994 1.2056 32 1 1.6054 -1.7198 1.2951 33 1 0.6528 0.1793 2.4753 34 1 3.2127 -0.7037 3.6400 35 1 1.6921 -1.6246 3.7300 36 1 -0.1124 -0.6862 5.0862 37 1 3.3887 -0.4341 6.0751 38 1 1.9425 -1.4557 6.2573 39 1 2.0603 -1.4180 8.4924 40 1 3.2977 -0.1699 8.8360 41 1 1.0029 -0.4874 10.3627 42 1 1.8409 1.0826 10.1729 43 1 0.0403 1.9021 9.0004 44 1 -0.7978 0.3321 9.1901 45 1 0.0793 1.2949 6.7403 46 1 -0.0631 -0.4510 7.1078 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602524009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:42 Heat of formation + Delta-G solvation = -87.528518 kcal Electronic energy + Delta-G solvation = -20910.479283 eV Core-core repulsion = 17833.075787 eV Total energy + Delta-G solvation = -3077.403496 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.42782 -38.70447 -37.55807 -35.35501 -33.85678 -33.20628 -30.17087 -29.62618 -28.70932 -27.08207 -25.38619 -23.75581 -22.69715 -21.93372 -21.48912 -20.63967 -18.55055 -17.80712 -17.44065 -16.70724 -16.59444 -16.44702 -16.12466 -15.50066 -15.41560 -14.86878 -14.64522 -14.36989 -14.05879 -13.88153 -13.64598 -13.27940 -13.22186 -13.17157 -12.88800 -12.74153 -12.55668 -12.41856 -12.23290 -12.14351 -11.98879 -11.90946 -11.75352 -11.49581 -11.31843 -11.09891 -11.04128 -10.56221 -10.52825 -9.41281 -9.33611 -8.17434 -6.26504 1.40268 1.43178 1.50788 2.42208 2.86707 3.15779 3.30740 3.51205 3.78757 3.82915 4.04221 4.10557 4.16587 4.22898 4.24032 4.27050 4.41310 4.45410 4.46928 4.66928 4.70909 4.74357 4.77540 4.83923 4.86799 4.93164 5.02760 5.03464 5.14625 5.20534 5.23654 5.29499 5.36426 5.38171 5.47619 5.55143 5.79367 5.88963 5.96432 6.03362 6.12269 6.31513 6.51400 6.77821 6.89038 7.41533 8.94405 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.059307 B = 0.002550 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.004507 B =10977.076861 C =11252.080603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.054 0.946 4 C 0.033 3.967 5 C -0.530 4.530 6 H 0.060 0.940 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.962 3.038 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.078 3.922 14 N -0.689 5.689 15 C 0.032 3.968 16 C 0.124 3.876 17 H 0.095 0.905 18 O -0.562 6.562 19 C 0.021 3.979 20 N -0.525 5.525 21 C 0.028 3.972 22 C -0.123 4.123 23 C -0.133 4.133 24 C 0.045 3.955 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.041 0.959 28 H -0.013 1.013 29 H -0.010 1.010 30 H 0.262 0.738 31 H 0.057 0.943 32 H 0.023 0.977 33 H 0.347 0.653 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.379 0.621 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.210 0.705 26.943 27.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.095 4.095 3 H 0.073 0.927 4 C -0.005 4.005 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.051 4.051 14 N -0.322 5.322 15 C -0.098 4.098 16 C 0.064 3.936 17 H 0.113 0.887 18 O -0.369 6.369 19 C -0.109 4.109 20 N -0.250 5.250 21 C -0.100 4.100 22 C -0.161 4.161 23 C -0.171 4.171 24 C -0.082 4.082 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.005 0.995 29 H 0.009 0.991 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.167 0.833 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.228 0.772 37 H 0.106 0.894 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.241 2.168 26.681 26.965 hybrid contribution -0.805 -2.021 -1.114 2.444 sum -4.046 0.147 25.568 25.886 Atomic orbital electron populations 1.21637 0.95005 1.00634 1.01011 1.21017 0.96210 0.98939 0.93337 0.92722 1.19003 0.94220 0.94582 0.92657 1.21613 1.34519 1.08572 0.92098 0.92167 1.25964 0.95280 0.96130 1.02673 1.70094 1.40240 1.22920 1.24340 0.85551 0.78949 0.78744 0.78118 1.19349 1.20982 1.19167 1.21837 0.99558 0.94181 0.89555 1.60401 1.20671 1.50097 1.01026 1.22617 1.01470 0.95591 0.90132 1.21764 0.80601 1.00359 0.90855 0.88696 1.86716 1.19755 1.34671 1.95761 1.22856 1.01836 0.95282 0.90894 1.65390 1.13090 1.44835 1.01655 1.23207 1.00604 0.96308 0.89861 1.22295 0.95802 1.00682 0.97306 1.22433 0.98416 1.01474 0.94763 1.23189 0.87488 1.01247 0.96309 0.91702 0.93642 0.94010 0.99496 0.99130 0.92931 0.92446 0.95843 0.83252 0.90262 0.94372 0.77224 0.89355 0.93500 0.93548 0.90093 0.90243 0.91124 0.91659 0.90567 0.90036 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 8.77 71.98 0.63 -4.03 16 2 C -0.08 -3.17 2.54 -10.80 -0.03 -3.20 16 3 H 0.05 2.39 8.14 -2.38 -0.02 2.37 16 4 C 0.03 1.76 4.45 29.85 0.13 1.89 16 5 C -0.53 -30.38 8.41 25.60 0.22 -30.16 16 6 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 7 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 8 N -0.94 -57.64 13.29 21.45 0.28 -57.36 16 9 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 C 0.08 2.70 5.14 86.30 0.44 3.14 16 14 N -0.69 -19.53 6.50 -513.90 -3.34 -22.87 16 15 C 0.03 0.69 5.36 86.30 0.46 1.15 16 16 C 0.12 2.36 3.33 30.59 0.10 2.46 16 17 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 18 O -0.56 -10.26 9.19 -148.98 -1.37 -11.62 16 19 C 0.02 0.33 4.91 86.30 0.42 0.75 16 20 N -0.53 -9.12 5.49 -881.47 -4.84 -13.96 16 21 C 0.03 0.39 6.49 86.45 0.56 0.95 16 22 C -0.12 -1.48 7.00 31.49 0.22 -1.26 16 23 C -0.13 -1.79 7.00 31.49 0.22 -1.57 16 24 C 0.05 0.73 4.64 86.45 0.40 1.13 16 25 H 0.06 1.99 6.68 -2.39 -0.02 1.98 16 26 H 0.04 1.83 6.95 -2.38 -0.02 1.81 16 27 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 28 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 29 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 30 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 31 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.35 9.50 6.54 -89.69 -0.59 8.91 16 34 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.38 4.69 8.34 -74.05 -0.62 4.07 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.05 0.66 7.88 -2.39 -0.02 0.64 16 39 H 0.05 0.59 7.82 -2.39 -0.02 0.57 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.08 1.63 6.79 -2.39 -0.02 1.61 16 46 H 0.05 0.67 6.86 -2.39 -0.02 0.65 16 Total: -1.00 -65.25 354.18 -3.25 -68.50 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -0.27 Total: 18.81 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 4.25 Total: -28.48 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -7.89 Total: -94.19 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -1.37 Total: -11.62 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -65.25 -3.25 -68.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602524009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.024 kcal (2) G-P(sol) polarization free energy of solvation -65.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds