Wall clock time and date at job start Mon Mar 30 2020 01:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 114.00202 * 2 1 4 4 C 1.53001 * 109.47235 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.46857 * 64.99986 * 4 3 2 6 6 C 1.48720 * 111.01831 * 54.49058 * 5 4 3 7 7 C 1.54381 * 104.51692 * 158.96284 * 6 5 4 8 8 C 1.54257 * 105.14978 * 336.27274 * 7 6 5 9 9 H 1.08995 * 110.32672 * 118.84838 * 8 7 6 10 10 N 1.46911 * 110.32143 * 241.05161 * 8 7 6 11 11 C 1.46897 * 110.99800 * 273.54778 * 10 8 7 12 12 C 1.52998 * 109.47156 * 180.02562 * 11 10 8 13 13 H 1.09007 * 109.47038 * 304.99993 * 12 11 10 14 14 C 1.53002 * 109.47517 * 64.99577 * 12 11 10 15 15 C 1.53002 * 109.47211 * 184.99674 * 12 11 10 16 16 C 1.50703 * 109.46769 * 174.99549 * 15 12 11 17 17 H 1.07999 * 120.00596 * 0.02562 * 16 15 12 18 18 C 1.37878 * 119.99575 * 179.97438 * 16 15 12 19 19 N 1.31508 * 120.00180 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99964 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46943 * 60.00477 * 20 18 16 22 22 H 1.48505 * 109.47344 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47590 * 300.00546 * 20 18 16 24 24 C 1.48567 * 110.99718 * 170.00040 * 5 4 3 25 25 H 1.09005 * 109.46797 * 300.00142 * 1 2 3 26 26 H 1.09000 * 109.47290 * 59.99901 * 1 2 3 27 27 H 1.08991 * 109.47038 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47323 * 59.99942 * 3 2 1 29 29 H 1.09006 * 109.46731 * 299.99917 * 3 2 1 30 30 H 1.09003 * 109.47184 * 304.99899 * 4 3 2 31 31 H 1.09000 * 109.46892 * 184.99807 * 4 3 2 32 32 H 1.09004 * 110.38960 * 40.24251 * 6 5 4 33 33 H 1.08996 * 110.50963 * 277.74694 * 6 5 4 34 34 H 1.09002 * 110.32526 * 217.32092 * 7 6 5 35 35 H 1.08998 * 110.32190 * 95.21733 * 7 6 5 36 36 H 1.00898 * 111.00011 * 149.59433 * 10 8 7 37 37 H 1.09002 * 109.46925 * 299.99414 * 11 10 8 38 38 H 1.08996 * 109.47634 * 59.99911 * 11 10 8 39 39 H 1.08998 * 109.46925 * 59.99654 * 14 12 11 40 40 H 1.08992 * 109.47634 * 180.02562 * 14 12 11 41 41 H 1.08999 * 109.47057 * 300.00802 * 14 12 11 42 42 H 1.08994 * 109.47033 * 294.99628 * 15 12 11 43 43 H 1.08997 * 109.46775 * 55.00072 * 15 12 11 44 44 H 0.97009 * 120.00071 * 179.97438 * 19 18 16 45 45 H 1.08999 * 110.41133 * 82.17552 * 24 5 4 46 46 H 1.09004 * 110.50861 * 319.79003 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9768 0.5627 -1.2562 6 6 3.4508 1.3048 -2.4328 7 6 4.3901 0.9082 -3.5920 8 6 5.7058 0.4735 -2.9141 9 1 5.9247 -0.5688 -3.1458 10 7 6.8125 1.3370 -3.3476 11 6 7.4112 0.8397 -4.5935 12 6 8.5578 1.7622 -5.0120 13 1 8.1921 2.7866 -5.0841 14 6 9.6755 1.6919 -3.9696 15 6 9.1000 1.3173 -6.3718 16 6 10.1448 2.2968 -6.8408 17 1 10.3972 3.1510 -6.2300 18 6 10.7792 2.1019 -8.0494 19 7 10.4722 1.0616 -8.7930 20 14 12.0748 3.3156 -8.6305 21 1 13.1855 3.3632 -7.6459 22 1 12.6010 2.8839 -9.9504 23 1 11.4678 4.6649 -8.7575 24 6 5.4531 0.6450 -1.4008 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6887 1.8464 0.8899 29 1 1.6886 1.8464 -0.8901 30 1 3.8515 0.5682 0.8410 31 1 3.9785 2.1765 0.0889 32 1 3.4979 2.3794 -2.2561 33 1 2.4276 0.9990 -2.6509 34 1 4.5654 1.7621 -4.2464 35 1 3.9641 0.0796 -4.1578 36 1 7.5081 1.4248 -2.6220 37 1 7.7955 -0.1679 -4.4350 38 1 6.6547 0.8209 -5.3780 39 1 10.0411 0.6676 -3.8974 40 1 10.4921 2.3495 -4.2675 41 1 9.2893 2.0088 -3.0008 42 1 9.5459 0.3271 -6.2788 43 1 8.2845 1.2823 -7.0942 44 1 10.9183 0.9247 -9.6434 45 1 5.9352 -0.1569 -0.8416 46 1 5.8166 1.6152 -1.0621 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602546809.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:02 Heat of formation + Delta-G solvation = -75.061746 kcal Electronic energy + Delta-G solvation = -20905.348248 eV Core-core repulsion = 17828.485352 eV Total energy + Delta-G solvation = -3076.862896 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.39292 -38.74561 -37.82489 -35.51803 -34.06118 -32.12714 -30.06219 -29.10636 -28.20562 -26.95565 -26.35752 -24.25937 -23.96093 -21.87028 -20.86155 -20.58226 -18.50729 -17.61273 -17.45732 -17.10800 -16.58337 -16.44274 -16.05975 -15.76138 -15.28747 -15.09455 -14.78675 -14.44545 -14.31409 -13.79480 -13.59487 -13.36050 -13.27526 -13.21871 -12.76920 -12.64570 -12.40104 -12.37392 -12.28539 -12.19242 -12.16752 -11.88008 -11.85911 -11.61705 -11.45157 -11.06096 -10.90551 -10.54153 -10.52430 -9.42716 -9.37204 -8.16593 -6.25912 1.40516 1.43440 1.51060 2.42537 2.82383 2.96204 3.16604 3.42944 3.59798 3.78397 4.11783 4.16545 4.19897 4.25439 4.29835 4.34972 4.46120 4.47543 4.51327 4.56417 4.60881 4.64408 4.68291 4.77251 4.87734 4.88817 4.90596 4.96292 4.98088 5.04625 5.13015 5.18330 5.25954 5.39356 5.49486 5.55640 5.76734 5.81995 5.90117 6.01898 6.14403 6.31875 6.34833 6.52077 6.90010 7.42211 8.95274 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.052009 B = 0.002638 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.239785 B =10609.698351 C =10802.793038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.061 3.939 4 C 0.044 3.956 5 N -0.514 5.514 6 C 0.044 3.956 7 C -0.116 4.116 8 C 0.080 3.920 9 H 0.043 0.957 10 N -0.678 5.678 11 C 0.079 3.921 12 C -0.074 4.074 13 H 0.057 0.943 14 C -0.127 4.127 15 C 0.032 3.968 16 C -0.529 4.529 17 H 0.062 0.938 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.962 3.038 21 H -0.266 1.266 22 H -0.285 1.285 23 H -0.268 1.268 24 C 0.039 3.961 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.345 0.655 37 H 0.021 0.979 38 H 0.055 0.945 39 H 0.039 0.961 40 H 0.045 0.955 41 H 0.068 0.932 42 H -0.011 1.011 43 H -0.015 1.015 44 H 0.262 0.738 45 H 0.085 0.915 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.364 0.934 19.904 26.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C -0.016 4.016 4 C -0.085 4.085 5 N -0.239 5.239 6 C -0.084 4.084 7 C -0.155 4.155 8 C -0.030 4.030 9 H 0.061 0.939 10 N -0.311 5.311 11 C -0.050 4.050 12 C -0.093 4.093 13 H 0.075 0.925 14 C -0.184 4.184 15 C -0.005 4.005 16 C -0.567 4.567 17 H 0.080 0.920 18 C -0.201 4.201 19 N -0.577 5.577 20 Si 0.787 3.213 21 H -0.191 1.191 22 H -0.211 1.211 23 H -0.193 1.193 24 C -0.090 4.090 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.166 0.834 37 H 0.040 0.960 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.007 0.993 43 H 0.004 0.996 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.827 0.578 19.474 26.408 hybrid contribution 1.264 0.508 -0.614 1.494 sum -16.564 1.086 18.860 25.124 Atomic orbital electron populations 1.22869 0.80215 1.03418 1.00545 1.87966 1.20661 1.28280 1.95470 1.22685 0.92851 0.84923 1.01107 1.22386 0.94238 0.98754 0.93072 1.65461 1.06061 1.50255 1.02112 1.23040 0.98960 0.96250 0.90122 1.22345 0.94182 1.01340 0.97643 1.22240 0.91892 0.94487 0.94397 0.93876 1.60687 1.13204 1.51010 1.06241 1.21845 0.95617 0.95547 0.91984 1.21008 0.94340 0.98558 0.95401 0.92454 1.21650 0.98181 1.00776 0.97785 1.19004 0.94325 0.95046 0.92142 1.21612 1.21262 1.09833 1.03980 0.92007 1.25977 0.99622 0.97420 0.97118 1.70100 1.44183 1.30248 1.13129 0.85548 0.79205 0.79178 0.77400 1.19134 1.21102 1.19276 1.23207 0.89402 1.01560 0.94781 0.93041 0.93753 0.89184 0.91197 0.92894 0.89746 0.91779 0.93260 0.90134 0.91126 0.91750 0.83441 0.96032 0.92680 0.94150 0.93569 0.91342 0.99298 0.99636 0.92964 0.89661 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.57 16 2 O -0.40 -7.84 10.65 -148.98 -1.59 -9.42 16 3 C 0.06 0.92 5.81 71.98 0.42 1.34 16 4 C 0.04 0.72 5.45 86.30 0.47 1.19 16 5 N -0.51 -10.73 5.43 -881.02 -4.79 -15.52 16 6 C 0.04 0.90 5.11 86.42 0.44 1.35 16 7 C -0.12 -2.83 6.69 31.49 0.21 -2.62 16 8 C 0.08 2.00 3.37 45.81 0.15 2.16 16 9 H 0.04 1.17 7.86 -2.39 -0.02 1.15 16 10 N -0.68 -18.97 6.18 -486.96 -3.01 -21.98 16 11 C 0.08 2.77 4.98 86.30 0.43 3.20 16 12 C -0.07 -3.04 2.54 -10.79 -0.03 -3.07 16 13 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 14 C -0.13 -4.57 8.77 71.98 0.63 -3.94 16 15 C 0.03 1.72 4.45 29.85 0.13 1.86 16 16 C -0.53 -30.11 8.41 25.60 0.22 -29.90 16 17 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 18 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 19 N -0.94 -57.82 13.29 21.45 0.28 -57.54 16 20 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 C 0.04 0.80 5.95 86.45 0.51 1.32 16 25 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 26 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.76 6.56 -2.38 -0.02 0.75 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 0.89 7.88 -2.39 -0.02 0.88 16 32 H 0.05 0.95 8.00 -2.38 -0.02 0.93 16 33 H 0.08 1.60 7.57 -2.39 -0.02 1.58 16 34 H 0.07 1.89 7.95 -2.39 -0.02 1.87 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.35 8.72 6.66 -89.70 -0.60 8.12 16 37 H 0.02 0.76 8.08 -2.39 -0.02 0.74 16 38 H 0.05 2.05 8.11 -2.39 -0.02 2.03 16 39 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.05 1.81 6.95 -2.39 -0.02 1.79 16 41 H 0.07 1.96 6.68 -2.39 -0.02 1.94 16 42 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 43 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 44 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 45 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.06 1.17 7.69 -2.39 -0.02 1.15 16 Total: -1.00 -66.01 359.31 -1.45 -67.46 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.32 Total: 15.55 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 5.30 Total: -25.33 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -7.51 Total: -95.04 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -1.59 Total: -9.42 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -66.01 -1.45 -67.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602546809.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.599 kcal (2) G-P(sol) polarization free energy of solvation -66.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds