Wall clock time and date at job start Mon Mar 30 2020 01:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 N 1.46300 * 113.99962 * 2 1 4 4 C 1.46841 * 111.00252 * 239.99887 * 3 2 1 5 5 C 1.53042 * 109.52629 * 174.16181 * 4 3 2 6 6 C 1.53117 * 109.27613 * 59.17734 * 5 4 3 7 7 N 1.46901 * 109.52200 * 182.38087 * 6 5 4 8 8 C 1.46900 * 111.00089 * 65.91482 * 7 6 5 9 9 C 1.46902 * 111.00332 * 189.87684 * 7 6 5 10 10 C 1.52994 * 109.47273 * 169.99831 * 9 7 6 11 11 H 1.08994 * 109.47697 * 54.99852 * 10 9 7 12 12 C 1.53006 * 109.47110 * 294.99763 * 10 9 7 13 13 C 1.52995 * 109.47102 * 174.99777 * 10 9 7 14 14 C 1.50704 * 109.47497 * 184.99657 * 13 10 9 15 15 H 1.08000 * 119.99598 * 0.02562 * 14 13 10 16 16 C 1.37872 * 120.00391 * 179.97438 * 14 13 10 17 17 N 1.31521 * 119.99850 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00353 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47060 * 89.99979 * 18 16 14 20 20 H 1.48495 * 109.47510 * 210.00150 * 18 16 14 21 21 H 1.48496 * 109.46863 * 330.00413 * 18 16 14 22 22 C 1.53120 * 109.16267 * 302.34396 * 6 5 4 23 23 C 1.46850 * 110.99997 * 115.78567 * 3 2 1 24 24 H 1.09001 * 109.47630 * 300.00366 * 1 2 3 25 25 H 1.09012 * 109.47025 * 60.00033 * 1 2 3 26 26 H 1.08999 * 109.47123 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46320 * 54.14118 * 4 3 2 28 28 H 1.08998 * 109.45620 * 294.17254 * 4 3 2 29 29 H 1.09003 * 109.49792 * 299.23877 * 5 4 3 30 30 H 1.08997 * 109.53473 * 179.13824 * 5 4 3 31 31 H 1.09002 * 109.52261 * 62.25263 * 6 5 4 32 32 H 1.09000 * 109.46806 * 60.00766 * 8 7 6 33 33 H 1.09004 * 109.46639 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.47514 * 300.00494 * 8 7 6 35 35 H 1.09003 * 109.46705 * 289.99820 * 9 7 6 36 36 H 1.08997 * 109.46622 * 49.99182 * 9 7 6 37 37 H 1.08997 * 109.47162 * 180.02562 * 12 10 9 38 38 H 1.09004 * 109.46624 * 300.00068 * 12 10 9 39 39 H 1.08998 * 109.46843 * 60.00110 * 12 10 9 40 40 H 1.09003 * 109.47226 * 305.00063 * 13 10 9 41 41 H 1.09004 * 109.47113 * 64.99821 * 13 10 9 42 42 H 0.97000 * 120.00057 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.50326 * 177.59202 * 22 6 5 44 44 H 1.08999 * 109.50267 * 297.71858 * 22 6 5 45 45 H 1.09002 * 109.46123 * 305.85888 * 23 3 2 46 46 H 1.08998 * 109.45942 * 65.83342 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.8643 1.5385 -1.1872 5 6 3.3509 2.9889 -1.2287 6 6 4.1496 3.2908 0.0423 7 7 4.5709 4.6980 0.0347 8 6 3.4114 5.5953 0.1268 9 6 5.5311 4.9660 1.1138 10 6 6.1335 6.3597 0.9260 11 1 5.3326 7.0965 0.8640 12 6 6.9556 6.3904 -0.3641 13 6 7.0381 6.6888 2.1151 14 6 7.5340 8.1065 1.9920 15 1 7.2336 8.7124 1.1500 16 6 8.3703 8.6305 2.9548 17 7 8.7358 7.8927 3.9805 18 14 8.9845 10.3880 2.8025 19 1 8.0348 11.3049 3.4830 20 1 10.3225 10.5016 3.4365 21 1 9.0841 10.7548 1.3671 22 6 3.2670 3.0262 1.2652 23 6 2.7829 1.5747 1.2345 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 2.2831 1.3245 -2.0841 28 1 3.7229 0.8686 -1.1425 29 1 2.4930 3.6589 -1.2872 30 1 3.9870 3.1351 -2.1016 31 1 5.0287 2.6475 0.0814 32 1 2.8714 5.3972 1.0526 33 1 3.7518 6.6307 0.1187 34 1 2.7508 5.4236 -0.7230 35 1 5.0198 4.9177 2.0752 36 1 6.3253 4.2201 1.0868 37 1 7.3851 7.3832 -0.4977 38 1 7.7565 5.6537 -0.3020 39 1 6.3111 6.1560 -1.2113 40 1 6.4742 6.5802 3.0416 41 1 7.8879 6.0062 2.1250 42 1 9.3245 8.2612 4.6577 43 1 3.8435 3.1983 2.1742 44 1 2.4079 3.6968 1.2459 45 1 2.1425 1.3870 2.0963 46 1 3.6420 0.9047 1.2676 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602690205.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:30 Heat of formation + Delta-G solvation = -6.892699 kcal Electronic energy + Delta-G solvation = -21667.822806 eV Core-core repulsion = 18593.915941 eV Total energy + Delta-G solvation = -3073.906864 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.62156 -37.38757 -35.71554 -33.95591 -32.02838 -31.11969 -29.81474 -27.19289 -26.66883 -26.28957 -24.75657 -23.36944 -22.86023 -21.31104 -19.38589 -18.78181 -17.45747 -16.38951 -15.69855 -15.66046 -15.46866 -14.67754 -14.48958 -14.41606 -14.26500 -13.83303 -13.59138 -13.24036 -13.03986 -12.74571 -12.32154 -12.30156 -12.04771 -11.64261 -11.50167 -11.40349 -11.18872 -11.06448 -10.85910 -10.84631 -10.70048 -10.46459 -10.26895 -10.20195 -10.15653 -9.57163 -9.10789 -8.93846 -8.91623 -8.31370 -7.94818 -5.96433 -3.97354 2.33370 3.33602 3.40016 3.43420 4.09943 4.45785 4.50007 4.71058 4.81362 4.96533 5.12268 5.13148 5.25384 5.28533 5.33027 5.39398 5.41593 5.45727 5.53314 5.58146 5.63218 5.64099 5.75794 5.82375 5.91401 5.94705 6.04290 6.16242 6.18213 6.30630 6.42682 6.55631 6.59092 6.72563 6.79995 7.04253 7.16176 7.23539 7.40301 7.45703 7.71164 7.87464 8.04094 8.48349 9.09130 9.65987 11.15146 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.045411 B = 0.003195 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.437966 B = 8762.188219 C = 9007.883940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.270 6.270 3 N -0.363 5.363 4 C 0.045 3.955 5 C -0.103 4.103 6 C 0.080 3.920 7 N -0.529 5.529 8 C 0.016 3.984 9 C 0.060 3.940 10 C -0.081 4.081 11 H 0.056 0.944 12 C -0.122 4.122 13 C 0.027 3.973 14 C -0.511 4.511 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.149 4.149 23 C 0.048 3.952 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.027 0.973 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.030 0.970 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.038 0.962 39 H 0.042 0.958 40 H 0.011 0.989 41 H 0.015 0.985 42 H 0.259 0.741 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.824 -13.389 -8.874 21.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.274 6.274 3 N -0.133 5.133 4 C -0.084 4.084 5 C -0.142 4.142 6 C -0.029 4.029 7 N -0.251 5.251 8 C -0.132 4.132 9 C -0.068 4.068 10 C -0.100 4.100 11 H 0.075 0.925 12 C -0.180 4.180 13 C -0.010 4.010 14 C -0.549 4.549 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.189 4.189 23 C -0.081 4.081 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.030 0.970 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.745 -13.153 -9.190 21.792 hybrid contribution 0.487 0.302 0.986 1.140 sum -14.259 -12.851 -8.204 20.875 Atomic orbital electron populations 1.22582 0.80845 1.01432 1.00540 1.90668 1.20682 1.19115 1.96908 1.67556 1.34752 1.07603 1.03423 1.22386 0.95775 0.97343 0.92880 1.21647 1.00062 0.93914 0.98546 1.21830 0.96785 0.90962 0.93371 1.62240 1.13776 1.01975 1.47152 1.22506 0.92696 0.98176 0.99794 1.22341 0.94061 0.99597 0.90751 1.21227 0.98053 0.92895 0.97805 0.92521 1.21578 0.98639 1.01150 0.96586 1.19125 0.93879 0.96453 0.91588 1.21235 1.28220 0.97965 1.07515 0.92593 1.25021 0.96525 0.97557 0.95477 1.69968 1.35757 1.36327 1.11688 0.86637 0.78130 0.85302 0.78197 1.20780 1.21321 1.19887 1.22349 1.00999 0.95025 1.00486 1.22320 0.96784 0.96952 0.92046 0.93858 0.93808 0.89632 0.89975 0.93713 0.90685 0.89722 0.90261 0.95453 0.90702 0.91901 0.95206 0.91505 0.92850 0.94299 0.93916 0.97022 0.96650 0.93127 0.90277 0.90246 0.90233 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.51 101.05 1.16 1.53 16 2 O -0.27 -3.17 10.96 -13.92 -0.15 -3.32 16 3 N -0.36 -4.11 5.00 -113.82 -0.57 -4.68 16 4 C 0.04 0.46 5.99 -3.83 -0.02 0.44 16 5 C -0.10 -1.07 5.35 -26.65 -0.14 -1.21 16 6 C 0.08 0.96 2.25 -67.59 -0.15 0.80 16 7 N -0.53 -7.48 4.17 -234.74 -0.98 -8.46 16 8 C 0.02 0.21 8.59 60.06 0.52 0.73 16 9 C 0.06 1.01 3.93 -3.83 -0.02 0.99 16 10 C -0.08 -1.64 2.26 -90.62 -0.20 -1.84 16 11 H 0.06 1.16 6.26 -51.93 -0.33 0.84 16 12 C -0.12 -2.36 8.89 37.16 0.33 -2.03 16 13 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 14 C -0.51 -14.30 8.41 -34.44 -0.29 -14.59 16 15 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 16 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 18 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.15 -1.70 4.66 -26.65 -0.12 -1.83 16 23 C 0.05 0.53 5.99 -3.83 -0.02 0.50 16 24 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.35 8.14 -51.92 -0.42 -0.08 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.79 6.45 -51.93 -0.34 0.45 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.99 7.93 -51.93 -0.41 0.58 16 32 H 0.03 0.35 6.17 -51.93 -0.32 0.03 16 33 H 0.07 1.08 6.21 -51.93 -0.32 0.76 16 34 H 0.06 0.72 6.42 -51.93 -0.33 0.39 16 35 H 0.03 0.52 7.13 -51.93 -0.37 0.15 16 36 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 37 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 40 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.08 0.96 7.04 -51.93 -0.37 0.59 16 44 H 0.08 0.93 6.20 -51.93 -0.32 0.61 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 349.38 15.07 5.27 5.27 Total: -1.00 -30.10 349.38 -8.34 -38.44 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -8.44 Total: -3.19 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 0.81 Total: -14.46 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: -0.81 Total: -39.46 kcal Atomic # 8 Polarization: -3.17 SS G_CDS: -0.15 Total: -3.32 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.10 -8.34 -38.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602690205.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.547 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds