Wall clock time and date at job start Mon Mar 30 2020 01:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47176 * 2 1 4 4 C 1.53000 * 109.47064 * 240.00504 * 2 1 3 5 5 O 1.42898 * 109.47417 * 120.00071 * 2 1 3 6 6 C 1.42898 * 113.99746 * 59.99967 * 5 2 1 7 7 C 1.52995 * 109.47258 * 180.02562 * 6 5 2 8 8 N 1.46900 * 109.47180 * 64.64759 * 7 6 5 9 9 C 1.46958 * 110.99512 * 75.70779 * 8 7 6 10 10 C 1.53055 * 109.35811 * 183.19119 * 9 8 7 11 11 N 1.46961 * 109.36258 * 301.59611 * 10 9 8 12 12 C 1.46900 * 110.99845 * 183.19515 * 11 10 9 13 13 C 1.50701 * 109.47372 * 170.00270 * 12 11 10 14 14 H 1.07997 * 119.99730 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00206 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99975 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00024 * 179.72188 * 15 13 12 18 18 H 1.48497 * 109.47325 * 180.27501 * 17 15 13 19 19 H 1.48501 * 109.47112 * 300.27649 * 17 15 13 20 20 H 1.48505 * 109.46982 * 60.27614 * 17 15 13 21 21 C 1.46950 * 110.88236 * 59.32637 * 11 10 9 22 22 C 1.46961 * 110.99971 * 199.50625 * 8 7 6 23 23 H 1.09003 * 109.47649 * 299.99667 * 1 2 3 24 24 H 1.09005 * 109.47589 * 60.00051 * 1 2 3 25 25 H 1.08996 * 109.47405 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47145 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.46943 * 300.00689 * 3 2 1 28 28 H 1.09003 * 109.46560 * 59.99666 * 3 2 1 29 29 H 1.09000 * 109.47085 * 299.99709 * 4 2 1 30 30 H 1.09006 * 109.47288 * 59.99861 * 4 2 1 31 31 H 1.09003 * 109.47098 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.47130 * 59.99938 * 6 5 2 33 33 H 1.09003 * 109.47528 * 300.00683 * 6 5 2 34 34 H 1.09000 * 109.46991 * 304.64668 * 7 6 5 35 35 H 1.09001 * 109.47391 * 184.65453 * 7 6 5 36 36 H 1.08993 * 109.49115 * 63.22902 * 9 8 7 37 37 H 1.08994 * 109.48964 * 303.14894 * 9 8 7 38 38 H 1.09007 * 109.48497 * 181.63669 * 10 9 8 39 39 H 1.08999 * 109.49410 * 61.56500 * 10 9 8 40 40 H 1.09003 * 109.47494 * 49.99601 * 12 11 10 41 41 H 1.09006 * 109.47144 * 289.99722 * 12 11 10 42 42 H 0.97006 * 119.99786 * 359.73041 * 16 15 13 43 43 H 1.08997 * 109.49263 * 60.64428 * 21 11 10 44 44 H 1.08997 * 109.49386 * 180.71378 * 21 11 10 45 45 H 1.08999 * 109.48868 * 296.78101 * 22 8 7 46 46 H 1.08998 * 109.48527 * 56.84701 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 8 2.0063 -0.6736 1.1667 6 6 1.5847 -2.0355 1.2644 7 6 2.1495 -2.6537 2.5448 8 7 1.5711 -1.9755 3.7125 9 6 0.1862 -2.4105 3.9416 10 6 -0.4049 -1.6247 5.1145 11 7 0.4180 -1.8442 6.3121 12 6 -0.1605 -1.1661 7.4798 13 6 0.5616 -1.6083 8.7264 14 1 1.3692 -2.3221 8.6581 15 6 0.1913 -1.1017 9.9541 16 7 -0.7918 -0.2321 10.0372 17 14 1.0813 -1.6558 11.5002 18 1 0.4935 -0.9739 12.6811 19 1 0.9369 -3.1257 11.6546 20 1 2.5212 -1.3083 11.3939 21 6 1.8028 -1.4093 6.0830 22 6 2.3940 -2.1950 4.9102 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1299 1.4425 0.0005 27 1 1.6765 1.9564 -0.8899 28 1 1.6765 1.9563 0.8900 29 1 1.6766 -1.7488 -1.2494 30 1 1.6766 -0.2072 -2.1393 31 1 3.1300 -0.7207 -1.2495 32 1 1.9491 -2.5915 0.4006 33 1 0.4958 -2.0778 1.2905 34 1 3.2332 -2.5375 2.5570 35 1 1.8975 -3.7136 2.5784 36 1 0.1732 -3.4753 4.1739 37 1 -0.4058 -2.2261 3.0452 38 1 -1.4225 -1.9662 5.3049 39 1 -0.4170 -0.5623 4.8713 40 1 -1.2170 -1.4215 7.5619 41 1 -0.0555 -0.0875 7.3625 42 1 -1.2538 0.0558 9.2343 43 1 1.8159 -0.3444 5.8508 44 1 2.3949 -1.5936 6.9794 45 1 2.4061 -3.2575 5.1534 46 1 3.4115 -1.8536 4.7198 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611173972.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:55 Heat of formation + Delta-G solvation = -46.272417 kcal Electronic energy + Delta-G solvation = -21837.809647 eV Core-core repulsion = 18762.195150 eV Total energy + Delta-G solvation = -3075.614497 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.35648 -38.46416 -35.41961 -33.50790 -32.54067 -30.47937 -29.68796 -27.71340 -27.59882 -26.60085 -24.54875 -22.96787 -22.12700 -21.27683 -20.02736 -19.18328 -16.77169 -16.68670 -16.14383 -15.46036 -14.98229 -14.65138 -14.32711 -14.17209 -13.88055 -13.75087 -13.63260 -13.52138 -13.20856 -12.60167 -12.29135 -12.16741 -12.09215 -11.93471 -11.86351 -11.62685 -11.46781 -11.31650 -11.09128 -10.90255 -10.76221 -10.64331 -10.57034 -10.19368 -10.09024 -9.89839 -9.49064 -8.63014 -8.34212 -8.04694 -7.26830 -6.33446 -4.01898 3.46592 3.49127 3.61211 3.67594 4.08132 4.55147 4.62154 4.67319 4.83987 4.89160 5.03449 5.12195 5.24092 5.29115 5.36497 5.40106 5.42725 5.43631 5.51321 5.56605 5.60586 5.65693 5.68831 5.77749 5.79378 5.83355 5.89790 5.91957 6.05882 6.10094 6.11188 6.20297 6.39955 6.58141 6.68856 7.02954 7.13198 7.21369 7.34216 7.39977 7.84891 8.04866 8.36956 8.62172 8.90837 9.68941 11.05768 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.034532 B = 0.003521 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.636836 B = 7949.887814 C = 8141.379008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.104 3.896 3 C -0.136 4.136 4 C -0.177 4.177 5 O -0.357 6.357 6 C 0.066 3.934 7 C 0.056 3.944 8 N -0.529 5.529 9 C 0.061 3.939 10 C 0.056 3.944 11 N -0.532 5.532 12 C 0.183 3.817 13 C -0.587 4.587 14 H 0.056 0.944 15 C 0.013 3.987 16 N -0.915 5.915 17 Si 1.073 2.927 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.288 1.288 21 C 0.069 3.931 22 C 0.060 3.940 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.037 0.963 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.019 0.981 41 H -0.019 1.019 42 H 0.267 0.733 43 H 0.028 0.972 44 H 0.086 0.914 45 H 0.036 0.964 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.919 -2.173 -22.268 22.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.065 3.935 3 C -0.193 4.193 4 C -0.235 4.235 5 O -0.276 6.276 6 C -0.011 4.011 7 C -0.072 4.072 8 N -0.254 5.254 9 C -0.067 4.067 10 C -0.073 4.073 11 N -0.257 5.257 12 C 0.058 3.942 13 C -0.626 4.626 14 H 0.074 0.926 15 C -0.190 4.190 16 N -0.552 5.552 17 Si 0.901 3.099 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.215 1.215 21 C -0.059 4.059 22 C -0.068 4.068 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.037 0.963 41 H -0.002 1.002 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.105 0.895 45 H 0.055 0.945 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.081 -1.887 -20.470 21.175 hybrid contribution -0.348 -0.366 -1.977 2.040 sum 4.732 -2.253 -22.447 23.050 Atomic orbital electron populations 1.22409 0.95958 1.02314 1.02717 1.21451 0.93083 0.93312 0.85667 1.21727 1.01770 0.93510 1.02341 1.22437 1.02053 1.00896 0.98106 1.88106 1.73749 1.23654 1.42063 1.22524 0.98647 0.83498 0.96472 1.22097 1.00096 0.94990 0.90044 1.62101 1.02256 1.57376 1.03679 1.22172 0.89319 0.97513 0.97673 1.22067 0.96998 0.97732 0.90493 1.62193 1.01389 1.58849 1.03293 1.19798 0.95158 0.91232 0.88034 1.21966 1.20236 1.28318 0.92076 0.92555 1.25855 0.96763 0.94710 1.01696 1.70793 1.21344 1.30421 1.32592 0.83492 0.75298 0.75845 0.75296 1.20859 1.21420 1.21465 1.21977 0.91104 0.96241 0.96625 1.22237 0.96157 0.98804 0.89573 0.91448 0.91961 0.92443 0.91977 0.91546 0.91620 0.92391 0.91816 0.91858 0.93418 0.93210 0.90360 0.93500 0.94504 0.91448 0.91308 0.95185 0.96318 1.00154 0.92329 0.95341 0.89544 0.94541 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 8.25 37.15 0.31 -1.37 16 2 C 0.10 1.06 1.14 -90.62 -0.10 0.96 16 3 C -0.14 -1.29 8.84 37.16 0.33 -0.96 16 4 C -0.18 -1.45 8.25 37.16 0.31 -1.15 16 5 O -0.36 -4.65 9.93 -35.23 -0.35 -5.00 16 6 C 0.07 0.74 5.33 37.16 0.20 0.94 16 7 C 0.06 0.70 5.39 -3.83 -0.02 0.68 16 8 N -0.53 -8.33 4.58 -234.47 -1.07 -9.40 16 9 C 0.06 0.98 5.43 -3.76 -0.02 0.96 16 10 C 0.06 1.08 5.61 -3.76 -0.02 1.06 16 11 N -0.53 -12.11 4.70 -235.90 -1.11 -13.22 16 12 C 0.18 4.93 4.03 -4.98 -0.02 4.91 16 13 C -0.59 -17.03 8.47 -34.44 -0.29 -17.32 16 14 H 0.06 1.63 7.13 -52.49 -0.37 1.25 16 15 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 16 N -0.91 -28.41 13.65 55.43 0.76 -27.65 16 17 Si 1.07 25.69 29.90 -169.99 -5.08 20.60 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.07 1.44 5.43 -3.77 -0.02 1.42 16 22 C 0.06 1.02 5.57 -3.76 -0.02 1.00 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.53 6.54 -51.93 -0.34 0.19 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.45 6.54 -51.93 -0.34 0.11 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.45 6.42 -51.93 -0.33 0.12 16 33 H 0.05 0.56 5.02 -51.93 -0.26 0.30 16 34 H 0.08 0.95 7.85 -51.93 -0.41 0.55 16 35 H 0.05 0.54 8.00 -51.93 -0.42 0.12 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.94 6.72 -51.93 -0.35 0.59 16 38 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.02 0.53 7.90 -51.93 -0.41 0.12 16 41 H -0.02 -0.55 7.98 -51.93 -0.41 -0.96 16 42 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 1.92 6.79 -51.93 -0.35 1.57 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 1.09 8.00 -51.93 -0.42 0.67 16 LS Contribution 351.01 15.07 5.29 5.29 Total: -1.00 -31.89 351.01 -9.62 -41.50 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -8.57 Total: -3.53 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 0.52 Total: -8.59 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -1.43 Total: -50.27 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.35 Total: -5.00 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.08 Total: 20.60 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.89 -9.62 -41.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611173972.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.768 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds