Wall clock time and date at job start Mon Mar 30 2020 01:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47176 * 2 1 4 4 C 1.53000 * 109.47064 * 240.00504 * 2 1 3 5 5 O 1.42898 * 109.47417 * 120.00071 * 2 1 3 6 6 C 1.42898 * 113.99746 * 59.99967 * 5 2 1 7 7 C 1.52995 * 109.47258 * 180.02562 * 6 5 2 8 8 N 1.46900 * 109.47180 * 64.64759 * 7 6 5 9 9 C 1.46958 * 110.99512 * 75.70779 * 8 7 6 10 10 C 1.53055 * 109.35811 * 183.19119 * 9 8 7 11 11 N 1.46961 * 109.36258 * 301.59611 * 10 9 8 12 12 C 1.46900 * 110.99845 * 183.19515 * 11 10 9 13 13 C 1.50701 * 109.47372 * 170.00270 * 12 11 10 14 14 H 1.07997 * 119.99730 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00206 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99975 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00024 * 179.72188 * 15 13 12 18 18 H 1.48497 * 109.47325 * 180.27501 * 17 15 13 19 19 H 1.48501 * 109.47112 * 300.27649 * 17 15 13 20 20 H 1.48505 * 109.46982 * 60.27614 * 17 15 13 21 21 C 1.46950 * 110.88236 * 59.32637 * 11 10 9 22 22 C 1.46961 * 110.99971 * 199.50625 * 8 7 6 23 23 H 1.09003 * 109.47649 * 299.99667 * 1 2 3 24 24 H 1.09005 * 109.47589 * 60.00051 * 1 2 3 25 25 H 1.08996 * 109.47405 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47145 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.46943 * 300.00689 * 3 2 1 28 28 H 1.09003 * 109.46560 * 59.99666 * 3 2 1 29 29 H 1.09000 * 109.47085 * 299.99709 * 4 2 1 30 30 H 1.09006 * 109.47288 * 59.99861 * 4 2 1 31 31 H 1.09003 * 109.47098 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.47130 * 59.99938 * 6 5 2 33 33 H 1.09003 * 109.47528 * 300.00683 * 6 5 2 34 34 H 1.09000 * 109.46991 * 304.64668 * 7 6 5 35 35 H 1.09001 * 109.47391 * 184.65453 * 7 6 5 36 36 H 1.08993 * 109.49115 * 63.22902 * 9 8 7 37 37 H 1.08994 * 109.48964 * 303.14894 * 9 8 7 38 38 H 1.09007 * 109.48497 * 181.63669 * 10 9 8 39 39 H 1.08999 * 109.49410 * 61.56500 * 10 9 8 40 40 H 1.09003 * 109.47494 * 49.99601 * 12 11 10 41 41 H 1.09006 * 109.47144 * 289.99722 * 12 11 10 42 42 H 0.97006 * 119.99786 * 359.73041 * 16 15 13 43 43 H 1.08997 * 109.49263 * 60.64428 * 21 11 10 44 44 H 1.08997 * 109.49386 * 180.71378 * 21 11 10 45 45 H 1.08999 * 109.48868 * 296.78101 * 22 8 7 46 46 H 1.08998 * 109.48527 * 56.84701 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 8 2.0063 -0.6736 1.1667 6 6 1.5847 -2.0355 1.2644 7 6 2.1495 -2.6537 2.5448 8 7 1.5711 -1.9755 3.7125 9 6 0.1862 -2.4105 3.9416 10 6 -0.4049 -1.6247 5.1145 11 7 0.4180 -1.8442 6.3121 12 6 -0.1605 -1.1661 7.4798 13 6 0.5616 -1.6083 8.7264 14 1 1.3692 -2.3221 8.6581 15 6 0.1913 -1.1017 9.9541 16 7 -0.7918 -0.2321 10.0372 17 14 1.0813 -1.6558 11.5002 18 1 0.4935 -0.9739 12.6811 19 1 0.9369 -3.1257 11.6546 20 1 2.5212 -1.3083 11.3939 21 6 1.8028 -1.4093 6.0830 22 6 2.3940 -2.1950 4.9102 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1299 1.4425 0.0005 27 1 1.6765 1.9564 -0.8899 28 1 1.6765 1.9563 0.8900 29 1 1.6766 -1.7488 -1.2494 30 1 1.6766 -0.2072 -2.1393 31 1 3.1300 -0.7207 -1.2495 32 1 1.9491 -2.5915 0.4006 33 1 0.4958 -2.0778 1.2905 34 1 3.2332 -2.5375 2.5570 35 1 1.8975 -3.7136 2.5784 36 1 0.1732 -3.4753 4.1739 37 1 -0.4058 -2.2261 3.0452 38 1 -1.4225 -1.9662 5.3049 39 1 -0.4170 -0.5623 4.8713 40 1 -1.2170 -1.4215 7.5619 41 1 -0.0555 -0.0875 7.3625 42 1 -1.2538 0.0558 9.2343 43 1 1.8159 -0.3444 5.8508 44 1 2.3949 -1.5936 6.9794 45 1 2.4061 -3.2575 5.1534 46 1 3.4115 -1.8536 4.7198 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611173972.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:54 Heat of formation + Delta-G solvation = -68.724835 kcal Electronic energy + Delta-G solvation = -21838.783257 eV Core-core repulsion = 18762.195150 eV Total energy + Delta-G solvation = -3076.588107 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.47744 -39.66196 -36.98501 -34.97828 -34.08541 -31.96644 -30.98804 -28.79574 -28.27701 -28.03164 -26.28221 -24.49383 -23.91220 -22.55499 -20.94231 -20.59155 -18.94581 -17.56362 -17.39636 -16.59046 -16.11542 -16.00485 -15.77556 -15.64891 -15.53924 -15.14989 -15.02985 -14.65212 -14.20247 -13.94647 -13.70573 -13.33104 -13.14397 -13.08005 -12.88331 -12.81644 -12.65287 -12.58294 -12.51717 -12.38285 -12.28467 -12.07677 -11.92658 -11.80804 -11.60675 -11.20191 -10.77696 -10.59281 -10.31797 -9.31509 -9.14782 -8.70663 -6.41265 1.52940 1.62026 1.81568 2.55394 2.79334 2.90834 3.09596 3.17346 3.88597 3.89237 3.95332 4.02186 4.11075 4.15406 4.27329 4.30768 4.38271 4.41988 4.46865 4.56086 4.57116 4.65953 4.69835 4.74637 4.77884 4.82136 4.85665 4.89313 4.91771 4.94926 4.96344 5.01216 5.05213 5.09535 5.17114 5.37217 5.39640 5.73057 5.91575 6.03566 6.13145 6.34039 6.38221 6.53706 6.60125 7.39941 8.68171 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.034532 B = 0.003521 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.636836 B = 7949.887814 C = 8141.379008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.096 3.904 3 C -0.136 4.136 4 C -0.171 4.171 5 O -0.386 6.386 6 C 0.067 3.933 7 C 0.056 3.944 8 N -0.543 5.543 9 C 0.073 3.927 10 C 0.054 3.946 11 N -0.537 5.537 12 C 0.195 3.805 13 C -0.599 4.599 14 H 0.056 0.944 15 C -0.038 4.038 16 N -0.937 5.937 17 Si 1.123 2.877 18 H -0.283 1.283 19 H -0.268 1.268 20 H -0.268 1.268 21 C 0.071 3.929 22 C 0.073 3.927 23 H 0.045 0.955 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.041 0.959 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.016 0.984 40 H -0.001 1.001 41 H -0.048 1.048 42 H 0.252 0.748 43 H 0.009 0.991 44 H 0.067 0.933 45 H 0.040 0.960 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.047 -3.690 -24.012 25.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.057 3.943 3 C -0.194 4.194 4 C -0.229 4.229 5 O -0.306 6.306 6 C -0.010 4.010 7 C -0.071 4.071 8 N -0.268 5.268 9 C -0.055 4.055 10 C -0.074 4.074 11 N -0.262 5.262 12 C 0.068 3.932 13 C -0.637 4.637 14 H 0.074 0.926 15 C -0.235 4.235 16 N -0.575 5.575 17 Si 0.944 3.056 18 H -0.208 1.208 19 H -0.193 1.193 20 H -0.193 1.193 21 C -0.057 4.057 22 C -0.055 4.055 23 H 0.064 0.936 24 H 0.098 0.902 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.034 0.966 40 H 0.017 0.983 41 H -0.031 1.031 42 H 0.061 0.939 43 H 0.028 0.972 44 H 0.086 0.914 45 H 0.058 0.942 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.213 -3.413 -22.268 23.369 hybrid contribution -0.723 0.155 -1.521 1.691 sum 5.490 -3.258 -23.789 24.631 Atomic orbital electron populations 1.22385 0.95651 1.02523 1.02552 1.21662 0.93403 0.93487 0.85786 1.21759 1.01618 0.93511 1.02466 1.22375 1.01887 1.01113 0.97505 1.88068 1.74311 1.24569 1.43637 1.22564 0.98601 0.83198 0.96625 1.22203 1.00290 0.95750 0.88856 1.62074 1.02036 1.58576 1.04123 1.22066 0.89822 0.96794 0.96814 1.22176 0.97093 0.97673 0.90503 1.62159 1.02615 1.57975 1.03457 1.19516 0.94170 0.89714 0.89801 1.22268 1.20240 1.28147 0.93069 0.92557 1.27505 0.96599 0.93897 1.05524 1.70929 1.22701 1.32007 1.31861 0.82866 0.75089 0.76472 0.71223 1.20843 1.19349 1.19296 1.21960 0.89979 0.95912 0.97881 1.22068 0.96841 0.98076 0.88507 0.93575 0.90164 0.92019 0.92224 0.89376 0.93545 0.91813 0.90233 0.92066 0.91037 0.93254 0.89876 0.91725 0.94093 0.88933 0.91118 0.96604 0.98258 1.03086 0.93886 0.97237 0.91413 0.94187 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 8.25 71.98 0.59 -2.42 16 2 C 0.10 1.77 1.14 -10.79 -0.01 1.76 16 3 C -0.14 -2.43 8.84 71.98 0.64 -1.79 16 4 C -0.17 -2.32 8.25 71.98 0.59 -1.73 16 5 O -0.39 -9.42 9.93 -148.98 -1.48 -10.90 16 6 C 0.07 1.33 5.33 71.98 0.38 1.71 16 7 C 0.06 1.25 5.39 86.30 0.46 1.71 16 8 N -0.54 -16.16 4.58 -895.71 -4.11 -20.26 16 9 C 0.07 2.21 5.43 86.31 0.47 2.67 16 10 C 0.05 2.11 5.61 86.31 0.48 2.59 16 11 N -0.54 -24.99 4.70 -900.26 -4.23 -29.22 16 12 C 0.19 10.93 4.03 85.56 0.34 11.28 16 13 C -0.60 -35.50 8.47 25.60 0.22 -35.28 16 14 H 0.06 3.28 7.13 -2.91 -0.02 3.26 16 15 C -0.04 -2.27 5.46 84.65 0.46 -1.81 16 16 N -0.94 -59.67 13.65 21.45 0.29 -59.38 16 17 Si 1.12 51.33 29.90 68.60 2.05 53.38 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 C 0.07 3.02 5.43 86.31 0.47 3.49 16 22 C 0.07 2.38 5.57 86.31 0.48 2.86 16 23 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.06 1.00 6.54 -2.39 -0.02 0.98 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.79 6.54 -2.39 -0.02 0.77 16 30 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 1.09 6.42 -2.39 -0.02 1.08 16 33 H 0.05 0.98 5.02 -2.39 -0.01 0.97 16 34 H 0.08 1.78 7.85 -2.39 -0.02 1.76 16 35 H 0.06 1.23 8.00 -2.39 -0.02 1.21 16 36 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.09 2.35 6.72 -2.39 -0.02 2.34 16 38 H 0.07 2.68 8.07 -2.38 -0.02 2.66 16 39 H 0.02 0.65 8.14 -2.39 -0.02 0.64 16 40 H 0.00 -0.03 7.90 -2.39 -0.02 -0.05 16 41 H -0.05 -2.94 7.98 -2.38 -0.02 -2.96 16 42 H 0.25 16.35 7.22 -92.70 -0.67 15.68 16 43 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.07 3.08 6.79 -2.39 -0.02 3.06 16 45 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.09 2.60 8.00 -2.39 -0.02 2.58 16 Total: -1.00 -70.28 351.01 -0.87 -71.15 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 1.01 Total: 10.18 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 5.59 Total: -14.96 kcal Atomic # 7 Polarization: -100.82 SS G_CDS: -8.04 Total: -108.86 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -1.48 Total: -10.90 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.05 Total: 53.38 kcal Total: -70.28 -0.87 -71.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611173972.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.430 kcal (2) G-P(sol) polarization free energy of solvation -70.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds