Wall clock time and date at job start Mon Mar 30 2020 00:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00217 * 2 1 4 4 H 1.08992 * 108.44930 * 332.32064 * 3 2 1 5 5 C 1.52559 * 108.51491 * 214.76770 * 3 2 1 6 6 C 1.50884 * 109.35640 * 153.72896 * 5 3 2 7 7 C 1.53950 * 110.09116 * 91.89118 * 6 5 3 8 8 N 1.47604 * 112.14213 * 319.43975 * 7 6 5 9 9 C 1.34778 * 118.64027 * 137.86657 * 8 7 6 10 10 O 1.21579 * 120.00660 * 355.15843 * 9 8 7 11 11 N 1.34779 * 119.99670 * 175.15221 * 9 8 7 12 12 C 1.46504 * 120.00093 * 185.11828 * 11 9 8 13 13 C 1.52996 * 109.46947 * 180.02562 * 12 11 9 14 14 C 1.50695 * 109.47178 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99981 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00536 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99732 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00486 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47015 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47587 * 120.00120 * 18 16 14 21 21 H 1.48508 * 109.47074 * 240.00290 * 18 16 14 22 22 C 1.44662 * 122.54152 * 317.85521 * 8 7 6 23 23 C 1.47099 * 108.50694 * 90.00451 * 3 2 1 24 24 H 1.09010 * 109.46970 * 299.99845 * 1 2 3 25 25 H 1.08997 * 109.47462 * 59.99146 * 1 2 3 26 26 H 1.08997 * 109.47609 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.49515 * 273.69803 * 5 3 2 28 28 H 1.09002 * 109.49270 * 33.77145 * 5 3 2 29 29 H 1.08990 * 109.37133 * 212.08269 * 6 5 3 30 30 H 1.09001 * 109.36644 * 331.70930 * 6 5 3 31 31 H 1.09004 * 108.94646 * 80.12230 * 7 6 5 32 32 H 1.09001 * 108.95037 * 198.83883 * 7 6 5 33 33 H 0.96999 * 119.99839 * 5.13036 * 11 9 8 34 34 H 1.08993 * 109.46671 * 300.00323 * 12 11 9 35 35 H 1.09000 * 109.46486 * 60.00772 * 12 11 9 36 36 H 1.09005 * 109.47298 * 299.99915 * 13 12 11 37 37 H 1.09001 * 109.47377 * 60.00041 * 13 12 11 38 38 H 0.97001 * 120.00005 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.61550 * 330.83931 * 22 8 7 40 40 H 1.09006 * 109.31947 * 210.89767 * 22 8 7 41 41 H 1.08997 * 109.33099 * 304.31120 * 23 3 2 42 42 H 1.09000 * 109.32957 * 63.96672 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3141 1.9930 -0.4803 5 6 3.2929 1.2646 -0.8249 6 6 3.5733 2.6386 -1.3818 7 6 4.4803 3.4249 -0.4179 8 7 4.1082 3.2120 0.9945 9 6 5.0894 3.0358 1.9016 10 8 6.2476 2.9661 1.5386 11 7 4.7865 2.9369 3.2112 12 6 5.8583 2.8581 4.2069 13 6 5.2478 2.7526 5.6059 14 6 6.3501 2.6722 6.6302 15 1 7.3829 2.6946 6.3150 16 6 6.0404 2.5711 7.9699 17 7 4.7828 2.5444 8.3538 18 14 7.4069 2.4722 9.2397 19 1 8.7236 2.5210 8.5547 20 1 7.2940 3.6170 10.1787 21 1 7.2894 1.1990 9.9951 22 6 2.7325 3.1855 1.4413 23 6 2.2003 1.7320 1.3949 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 4.1231 0.9526 -0.1913 28 1 3.1752 0.5568 -1.6455 29 1 4.0692 2.5430 -2.3476 30 1 2.6332 3.1748 -1.5117 31 1 5.5124 3.1063 -0.5638 32 1 4.4027 4.4879 -0.6466 33 1 3.8590 2.9177 3.4944 34 1 6.4719 1.9788 4.0114 35 1 6.4767 3.7536 4.1466 36 1 4.6338 3.6317 5.8017 37 1 4.6295 1.8569 5.6659 38 1 4.5648 2.4729 9.2963 39 1 2.1247 3.8156 0.7920 40 1 2.6782 3.5595 2.4638 41 1 1.2472 1.6799 1.9212 42 1 2.9170 1.0696 1.8803 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612380232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:05 Heat of formation + Delta-G solvation = -82.332780 kcal Electronic energy + Delta-G solvation = -21489.459616 eV Core-core repulsion = 18276.448329 eV Total energy + Delta-G solvation = -3213.011286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.50617 -38.79932 -36.50890 -34.90525 -33.54198 -32.62656 -32.11578 -29.47418 -27.49634 -26.19234 -25.04247 -24.54177 -22.00130 -20.91356 -20.76312 -19.22309 -17.93373 -17.16604 -16.36232 -15.97113 -15.53883 -15.51576 -15.38222 -14.50139 -14.33669 -14.12240 -14.00969 -13.43979 -13.18454 -12.98157 -12.69481 -12.51470 -12.24759 -11.99850 -11.69537 -11.43493 -11.13356 -11.11250 -11.01699 -10.88470 -10.71382 -10.59130 -10.30050 -9.83230 -9.79412 -9.51541 -9.21896 -8.68272 -8.44196 -8.16340 -6.07393 -4.09691 2.93609 3.30080 3.37652 3.43221 3.47256 3.61910 4.26515 4.43106 4.51320 4.65687 4.77854 4.91609 4.94009 5.08459 5.11436 5.12666 5.25947 5.29936 5.34681 5.46005 5.51245 5.53688 5.70142 5.80978 5.90708 5.95486 6.09708 6.16364 6.31722 6.43294 6.70165 6.80809 7.02753 7.04091 7.17966 7.58447 7.65724 7.92094 8.27396 8.40872 8.94924 9.01310 9.55060 11.04381 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024522 B = 0.003903 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.564480 B = 7172.818335 C = 7961.130088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.099 3.901 4 H 0.052 0.948 5 C -0.115 4.115 6 C -0.128 4.128 7 C 0.127 3.873 8 N -0.629 5.629 9 C 0.698 3.302 10 O -0.596 6.596 11 N -0.738 5.738 12 C 0.139 3.861 13 C 0.013 3.987 14 C -0.519 4.519 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.117 3.883 23 C -0.167 4.167 24 H 0.041 0.959 25 H 0.038 0.962 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.393 0.607 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.021 0.979 37 H 0.022 0.978 38 H 0.261 0.739 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.729 0.078 -19.050 21.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.309 6.309 3 C 0.042 3.958 4 H 0.070 0.930 5 C -0.153 4.153 6 C -0.166 4.166 7 C 0.004 3.996 8 N -0.367 5.367 9 C 0.399 3.601 10 O -0.475 6.475 11 N -0.393 5.393 12 C 0.016 3.984 13 C -0.025 4.025 14 C -0.558 4.558 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.008 4.008 23 C -0.206 4.206 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.228 0.772 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.856 -0.119 -19.142 21.531 hybrid contribution -0.225 0.112 1.016 1.047 sum -10.081 -0.006 -18.126 20.741 Atomic orbital electron populations 1.22774 0.81467 1.02607 0.99744 1.87985 1.19311 1.28361 1.95263 1.21069 0.94995 0.84282 0.95431 0.92989 1.21156 0.97124 0.97255 0.99779 1.21723 1.00335 0.95686 0.98904 1.21661 1.00422 0.98780 0.78689 1.46919 1.05006 1.77342 1.07444 1.16069 0.84642 0.77921 0.81440 1.90863 1.18378 1.58712 1.79550 1.45717 1.11140 1.77889 1.04577 1.21593 0.88389 1.00555 0.87884 1.19323 0.96934 0.97688 0.88516 1.21095 0.92963 1.50673 0.91044 0.92163 1.24992 0.95599 0.95051 0.98656 1.69970 1.16872 1.50435 1.16115 0.86462 0.82252 0.77605 0.81283 1.19558 1.20966 1.20952 1.21357 0.82953 0.95569 1.00908 1.21859 1.02877 0.98023 0.97856 0.94038 0.94310 0.89831 0.90541 0.90861 0.90153 0.91764 0.88900 0.92361 0.77195 0.92717 0.92884 0.96060 0.95986 0.92952 0.90383 0.90060 0.90450 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.74 101.05 1.09 1.34 16 2 O -0.39 -4.50 10.17 -35.23 -0.36 -4.85 16 3 C 0.10 1.01 2.09 -29.79 -0.06 0.95 16 4 H 0.05 0.44 6.89 -51.93 -0.36 0.08 16 5 C -0.12 -1.21 5.16 -28.02 -0.14 -1.35 16 6 C -0.13 -1.09 5.70 -27.30 -0.16 -1.25 16 7 C 0.13 1.44 6.13 -2.94 -0.02 1.42 16 8 N -0.63 -8.44 2.24 -178.20 -0.40 -8.84 16 9 C 0.70 12.65 8.21 -86.91 -0.71 11.93 16 10 O -0.60 -13.04 15.62 5.30 0.08 -12.96 16 11 N -0.74 -13.58 5.39 -65.23 -0.35 -13.93 16 12 C 0.14 3.05 5.62 -4.04 -0.02 3.03 16 13 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 14 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 15 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 18 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.12 1.23 5.21 -4.04 -0.02 1.21 16 23 C -0.17 -1.80 5.25 -28.58 -0.15 -1.95 16 24 H 0.04 0.31 7.57 -51.92 -0.39 -0.08 16 25 H 0.04 0.26 8.07 -51.93 -0.42 -0.16 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 1.01 7.48 -51.93 -0.39 0.62 16 28 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.46 7.31 -51.93 -0.38 0.08 16 31 H 0.09 1.25 6.91 -51.93 -0.36 0.89 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.39 6.37 6.08 -40.82 -0.25 6.12 16 34 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.08 0.64 8.05 -51.93 -0.42 0.22 16 40 H 0.08 0.87 6.13 -51.93 -0.32 0.55 16 41 H 0.08 0.73 7.53 -51.93 -0.39 0.34 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 332.62 15.07 5.01 5.01 Total: -1.00 -32.82 332.62 -8.07 -40.89 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.02 Total: 1.49 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -0.76 Total: 2.20 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: -0.01 Total: -48.30 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.28 Total: -17.81 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.82 -8.07 -40.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612380232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.440 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds