Wall clock time and date at job start Mon Mar 30 2020 01:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47200 * 2 1 4 4 O 1.42899 * 109.47139 * 120.00566 * 2 1 3 5 5 C 1.42901 * 114.00077 * 89.99696 * 4 2 1 6 6 C 1.53004 * 109.47000 * 180.02562 * 5 4 2 7 7 H 1.08995 * 109.47036 * 185.00331 * 6 5 4 8 8 C 1.52999 * 109.47000 * 304.99885 * 6 5 4 9 9 N 1.46905 * 109.47234 * 64.99789 * 6 5 4 10 10 C 1.46901 * 110.99947 * 155.00084 * 9 6 5 11 11 C 1.53034 * 109.45880 * 155.00354 * 10 9 6 12 12 C 1.53192 * 109.31274 * 181.37069 * 11 10 9 13 13 N 1.46923 * 108.77570 * 305.36845 * 12 11 10 14 14 C 1.36943 * 120.62670 * 233.58733 * 13 12 11 15 15 H 1.08000 * 120.00118 * 152.46023 * 14 13 12 16 16 C 1.38809 * 119.99995 * 332.45308 * 14 13 12 17 17 N 1.31616 * 120.00088 * 342.38232 * 16 14 13 18 18 Si 1.86805 * 119.99918 * 162.64692 * 16 14 13 19 19 H 1.48500 * 109.46719 * 90.00633 * 18 16 14 20 20 H 1.48498 * 109.46980 * 210.00336 * 18 16 14 21 21 H 1.48494 * 109.47121 * 330.00807 * 18 16 14 22 22 C 1.46921 * 118.74387 * 53.85427 * 13 12 11 23 23 C 1.53045 * 109.44565 * 275.06389 * 10 9 6 24 24 H 1.09003 * 109.46852 * 299.99866 * 1 2 3 25 25 H 1.09000 * 109.47024 * 59.99456 * 1 2 3 26 26 H 1.09000 * 109.47015 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46852 * 240.00134 * 2 1 3 28 28 H 1.09003 * 109.46953 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47053 * 300.00159 * 3 2 1 30 30 H 1.08998 * 109.46678 * 60.00168 * 3 2 1 31 31 H 1.08993 * 109.46904 * 60.00040 * 5 4 2 32 32 H 1.09002 * 109.47117 * 299.99850 * 5 4 2 33 33 H 1.08997 * 109.47235 * 179.97438 * 8 6 5 34 34 H 1.08999 * 109.47537 * 300.00082 * 8 6 5 35 35 H 1.09003 * 109.47176 * 60.00358 * 8 6 5 36 36 H 1.00902 * 111.00129 * 278.95811 * 9 6 5 37 37 H 1.08997 * 109.45749 * 35.02747 * 10 9 6 38 38 H 1.09001 * 109.50018 * 61.41829 * 11 10 9 39 39 H 1.08995 * 109.52581 * 301.33797 * 11 10 9 40 40 H 1.08999 * 109.59072 * 185.57621 * 12 11 10 41 41 H 1.08998 * 109.70151 * 65.21737 * 12 11 10 42 42 H 0.97001 * 119.99936 * 180.02562 * 17 16 14 43 43 H 1.08995 * 109.58331 * 65.92809 * 22 13 12 44 44 H 1.09003 * 109.59217 * 186.35836 * 22 13 12 45 45 H 1.09002 * 109.49672 * 298.57298 * 23 10 9 46 46 H 1.09002 * 109.49925 * 58.63636 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2001 -2.0783 0.9884 6 6 2.7079 -2.6929 2.2944 7 1 2.9401 -3.7457 2.1343 8 6 3.9696 -1.9558 2.7481 9 7 1.6714 -2.5716 3.3283 10 6 1.8305 -3.6078 4.3573 11 6 1.2049 -3.1250 5.6679 12 6 1.4029 -4.1936 6.7476 13 7 0.8639 -5.4687 6.2554 14 6 -0.0561 -6.1676 6.9906 15 1 -0.7626 -6.8169 6.4951 16 6 -0.0804 -6.0414 8.3727 17 7 0.9617 -5.5472 9.0069 18 14 -1.5893 -6.5801 9.3334 19 1 -1.4493 -8.0084 9.7148 20 1 -1.7180 -5.7508 10.5585 21 1 -2.7997 -6.4092 8.4904 22 6 1.3351 -5.9828 4.9622 23 6 1.1338 -4.8914 3.8999 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 2.9319 -2.2467 0.1985 32 1 1.2538 -2.5434 0.7123 33 1 4.3311 -2.3933 3.6787 34 1 4.7387 -2.0457 1.9810 35 1 3.7375 -0.9029 2.9082 36 1 1.6766 -1.6500 3.7392 37 1 2.8911 -3.8057 4.5124 38 1 0.1392 -2.9505 5.5198 39 1 1.6852 -2.1981 5.9811 40 1 0.8744 -3.8992 7.6543 41 1 2.4653 -4.3052 6.9637 42 1 0.9448 -5.4594 9.9728 43 1 2.3927 -6.2365 5.0334 44 1 0.7620 -6.8692 4.6904 45 1 0.0688 -4.7002 3.7684 46 1 1.5636 -5.2214 2.9541 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619715267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:49 Heat of formation + Delta-G solvation = -41.696671 kcal Electronic energy + Delta-G solvation = -21797.023742 eV Core-core repulsion = 18721.607664 eV Total energy + Delta-G solvation = -3075.416078 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.89476 -37.83487 -35.69484 -33.20083 -32.10270 -30.66142 -29.65061 -27.98892 -27.45059 -26.32858 -24.46725 -22.27785 -21.50618 -21.40880 -20.25209 -18.99336 -16.82969 -16.73247 -15.67972 -15.47314 -14.91009 -14.70190 -14.11336 -13.96808 -13.63905 -13.44235 -13.38706 -13.03726 -12.70155 -12.52294 -12.39444 -12.31752 -12.07599 -11.95589 -11.48109 -11.43341 -11.26642 -11.10547 -10.85053 -10.70687 -10.64615 -10.56358 -10.28141 -10.14001 -9.87346 -9.56028 -9.52133 -9.35469 -8.41528 -8.01268 -6.61767 -5.74006 -3.15115 3.40842 3.47753 3.50976 3.64925 4.41224 4.54696 4.70940 4.89337 5.00197 5.03512 5.19422 5.35642 5.37802 5.41085 5.42600 5.51594 5.57072 5.61506 5.64541 5.67924 5.73623 5.76331 5.87108 5.96313 5.99994 6.07391 6.11079 6.23926 6.31285 6.40918 6.57984 6.64296 6.71383 6.75088 6.89248 7.10943 7.24136 7.43998 7.50152 7.72014 7.80042 7.85316 8.50473 9.26738 9.90873 10.47798 11.34594 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.032544 B = 0.003593 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.178980 B = 7791.381493 C = 8000.787972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.082 3.918 3 C -0.149 4.149 4 O -0.375 6.375 5 C 0.075 3.925 6 C 0.087 3.913 7 H 0.086 0.914 8 C -0.176 4.176 9 N -0.678 5.678 10 C 0.095 3.905 11 C -0.140 4.140 12 C 0.174 3.826 13 N -0.592 5.592 14 C -0.249 4.249 15 H 0.065 0.935 16 C 0.000 4.000 17 N -0.904 5.904 18 Si 0.901 3.099 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.145 3.855 23 C -0.116 4.116 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.342 0.658 37 H 0.035 0.965 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.088 0.912 41 H 0.015 0.985 42 H 0.253 0.747 43 H 0.014 0.986 44 H 0.053 0.947 45 H 0.063 0.937 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.727 10.682 -17.503 20.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.024 3.976 3 C -0.206 4.206 4 O -0.294 6.294 5 C -0.002 4.002 6 C -0.024 4.024 7 H 0.104 0.896 8 C -0.235 4.235 9 N -0.309 5.309 10 C -0.014 4.014 11 C -0.179 4.179 12 C 0.047 3.953 13 N -0.315 5.315 14 C -0.379 4.379 15 H 0.083 0.917 16 C -0.198 4.198 17 N -0.549 5.549 18 Si 0.731 3.269 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.018 3.982 23 C -0.156 4.156 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.161 0.839 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.033 0.967 42 H 0.063 0.937 43 H 0.032 0.968 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.303 10.430 -17.498 20.637 hybrid contribution 0.047 -0.065 0.756 0.760 sum 3.350 10.365 -16.743 19.974 Atomic orbital electron populations 1.22276 0.96071 1.02538 1.02210 1.22005 0.93688 0.93544 0.88372 1.21850 1.01515 0.94899 1.02326 1.87925 1.86335 1.20147 1.34984 1.22606 0.99313 0.81552 0.96701 1.21597 0.90127 0.98879 0.91793 0.89555 1.22391 0.98255 1.01663 1.01221 1.60667 1.47651 1.07519 1.15113 1.21473 0.97367 0.91913 0.90620 1.22372 1.00689 0.99085 0.95788 1.20731 0.96651 0.83297 0.94575 1.44067 1.48673 1.20132 1.18612 1.19188 1.07433 1.23142 0.88140 0.91744 1.25021 0.97212 1.00871 0.96694 1.70039 1.27427 1.49886 1.07552 0.86317 0.83129 0.77977 0.79502 1.21472 1.21593 1.20478 1.21010 0.96385 0.94258 0.86578 1.22091 1.00725 0.95214 0.97601 0.91696 0.92239 0.92301 0.92827 0.92267 0.91628 0.91788 0.93923 0.92729 0.92776 0.92811 0.91665 0.83902 0.94716 0.91918 0.93705 0.89399 0.96698 0.93718 0.96829 0.92819 0.91830 0.93807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.53 37.16 0.35 -1.25 16 2 C 0.08 0.78 3.34 -26.73 -0.09 0.69 16 3 C -0.15 -1.20 9.56 37.16 0.36 -0.85 16 4 O -0.37 -4.46 9.06 -35.23 -0.32 -4.78 16 5 C 0.08 0.86 5.58 37.16 0.21 1.07 16 6 C 0.09 1.10 2.80 -67.71 -0.19 0.91 16 7 H 0.09 1.11 7.10 -51.93 -0.37 0.74 16 8 C -0.18 -2.11 8.95 37.16 0.33 -1.77 16 9 N -0.68 -10.19 6.00 -99.69 -0.60 -10.79 16 10 C 0.10 1.67 2.27 -67.67 -0.15 1.51 16 11 C -0.14 -2.76 5.36 -26.61 -0.14 -2.90 16 12 C 0.17 4.25 5.31 -3.71 -0.02 4.23 16 13 N -0.59 -15.23 2.99 -172.06 -0.51 -15.75 16 14 C -0.25 -7.00 9.59 -15.06 -0.14 -7.14 16 15 H 0.06 1.78 7.89 -52.49 -0.41 1.36 16 16 C 0.00 0.00 4.90 -17.43 -0.09 -0.08 16 17 N -0.90 -26.65 11.19 55.49 0.62 -26.03 16 18 Si 0.90 22.02 29.59 -169.99 -5.03 16.99 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.14 3.14 6.54 -3.49 -0.02 3.11 16 23 C -0.12 -2.14 5.59 -26.38 -0.15 -2.29 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.59 7.87 -51.93 -0.41 0.18 16 27 H 0.05 0.46 7.79 -51.93 -0.40 0.05 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.05 0.65 7.87 -51.93 -0.41 0.24 16 33 H 0.05 0.69 7.42 -51.93 -0.39 0.31 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.81 7.55 -51.93 -0.39 0.41 16 36 H 0.34 5.17 8.07 -39.29 -0.32 4.85 16 37 H 0.03 0.63 7.11 -51.93 -0.37 0.26 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.04 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.09 2.40 6.03 -51.93 -0.31 2.08 16 41 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.04 0.71 7.41 -51.93 -0.38 0.33 16 LS Contribution 355.43 15.07 5.36 5.36 Total: -1.00 -29.47 355.43 -9.01 -38.48 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -8.78 Total: 1.30 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 0.25 Total: -4.77 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.49 Total: -52.57 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.32 Total: -4.78 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.47 -9.01 -38.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619715267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.216 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds