Wall clock time and date at job start Mon Mar 30 2020 00:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99954 * 2 1 4 4 H 1.08998 * 112.85154 * 341.19420 * 3 2 1 5 5 C 1.53783 * 113.61741 * 112.50197 * 3 2 1 6 6 C 1.53787 * 87.08023 * 89.11437 * 5 3 2 7 7 H 1.08996 * 113.69332 * 270.87590 * 6 5 3 8 8 C 1.53004 * 113.61355 * 139.98452 * 6 5 3 9 9 N 1.46499 * 109.47198 * 87.50373 * 8 6 5 10 10 C 1.34777 * 119.99665 * 180.27868 * 9 8 6 11 11 O 1.21283 * 119.99990 * 359.71991 * 10 9 8 12 12 C 1.50698 * 119.99538 * 179.72653 * 10 9 8 13 13 H 1.09004 * 109.47330 * 319.99391 * 12 10 9 14 14 N 1.46907 * 109.46627 * 199.99924 * 12 10 9 15 15 C 1.52998 * 109.47522 * 79.99747 * 12 10 9 16 16 C 1.52996 * 109.47058 * 184.99883 * 15 12 10 17 17 C 1.50700 * 109.46838 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00466 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00190 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99887 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00366 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47167 * 59.99689 * 21 19 17 23 23 H 1.48493 * 109.47173 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46789 * 299.99785 * 21 19 17 25 25 C 1.53782 * 87.08149 * 25.43612 * 6 5 3 26 26 H 1.08999 * 109.46878 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46895 * 299.99831 * 1 2 3 28 28 H 1.08998 * 109.47278 * 60.00112 * 1 2 3 29 29 H 1.08998 * 113.61533 * 334.56947 * 5 3 2 30 30 H 1.08998 * 113.62034 * 203.66215 * 5 3 2 31 31 H 1.09009 * 109.46730 * 327.50161 * 8 6 5 32 32 H 1.08998 * 109.46846 * 207.50705 * 8 6 5 33 33 H 0.97001 * 119.99790 * 359.97438 * 9 8 6 34 34 H 1.00909 * 110.99503 * 176.04883 * 14 12 10 35 35 H 1.00903 * 110.99748 * 299.99524 * 14 12 10 36 36 H 1.08993 * 109.46811 * 304.99874 * 15 12 10 37 37 H 1.09003 * 109.47236 * 64.99934 * 15 12 10 38 38 H 1.09006 * 109.47191 * 299.99406 * 16 15 12 39 39 H 1.08996 * 109.47643 * 60.00177 * 16 15 12 40 40 H 0.96997 * 119.99981 * 179.97438 * 20 19 17 41 41 H 1.09001 * 113.61616 * 89.11044 * 25 6 5 42 42 H 1.09000 * 113.61435 * 219.93527 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0788 -0.3238 5 6 2.7534 1.6489 1.3017 6 6 4.0062 1.0330 0.6565 7 1 4.1098 -0.0372 0.8354 8 6 5.2910 1.8112 0.9475 9 7 5.8764 1.3353 2.2033 10 6 7.0173 1.8840 2.6655 11 8 7.5621 2.7682 2.0391 12 6 7.6161 1.3987 3.9604 13 1 6.8205 1.2163 4.6828 14 7 8.5326 2.4182 4.4884 15 6 8.3863 0.1004 3.7113 16 6 8.8887 -0.4583 5.0441 17 6 9.6478 -1.7367 4.7987 18 1 9.7604 -2.1134 3.7927 19 6 10.1987 -2.4257 5.8583 20 7 10.0622 -1.9669 7.0833 21 14 11.1392 -4.0108 5.5542 22 1 12.2958 -3.7372 4.6639 23 1 11.6268 -4.5530 6.8477 24 1 10.2418 -5.0027 4.9091 25 6 3.3756 1.3719 -0.7046 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 2.3927 1.0964 2.1693 30 1 2.8390 2.7198 1.4863 31 1 5.0610 2.8733 1.0332 32 1 6.0007 1.6576 0.1346 33 1 5.4404 0.6284 2.7044 34 1 8.8980 2.1446 5.3884 35 1 9.2797 2.6052 3.8365 36 1 7.7278 -0.6274 3.2374 37 1 9.2357 0.3013 3.0584 38 1 9.5473 0.2696 5.5181 39 1 8.0394 -0.6593 5.6971 40 1 10.4494 -2.4517 7.8288 41 1 3.6311 2.3670 -1.0685 42 1 3.5183 0.5964 -1.4571 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714736923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:11 Heat of formation + Delta-G solvation = -103.731606 kcal Electronic energy + Delta-G solvation = -20457.794164 eV Core-core repulsion = 17243.854955 eV Total energy + Delta-G solvation = -3213.939209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.11110 -40.31914 -37.44120 -36.95003 -35.15370 -34.83022 -31.68265 -29.74124 -27.91470 -27.25241 -26.60711 -25.48810 -23.44757 -22.33880 -21.27592 -20.32479 -18.87187 -18.09593 -17.59414 -17.03113 -16.59605 -16.54714 -16.33154 -15.94651 -15.84024 -15.56123 -15.09453 -14.73817 -14.54103 -14.28707 -13.95392 -13.76432 -13.44261 -13.31745 -12.94621 -12.82382 -12.65434 -12.54244 -12.44678 -11.83926 -11.78564 -11.72653 -11.56493 -11.32007 -11.15019 -10.69527 -10.55738 -10.43443 -10.05660 -9.63843 -8.21508 -6.32054 1.39874 1.41485 1.49513 1.63375 2.17719 2.40182 2.76630 3.11965 3.58532 3.63319 3.76483 3.80702 3.88779 3.92137 4.13560 4.25903 4.31397 4.38875 4.56642 4.58566 4.66154 4.69695 4.76943 4.81668 4.85824 4.87831 4.92003 5.08666 5.11649 5.22695 5.33502 5.46222 5.53567 5.65698 5.80536 6.07682 6.21269 6.32942 6.48017 6.55701 6.83265 7.25356 7.37012 8.89118 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019344 B = 0.003293 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.119722 B = 8500.675988 C = 9438.403332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.061 3.939 4 H 0.093 0.907 5 C -0.151 4.151 6 C -0.114 4.114 7 H 0.093 0.907 8 C 0.132 3.868 9 N -0.718 5.718 10 C 0.525 3.475 11 O -0.574 6.574 12 C 0.080 3.920 13 H 0.109 0.891 14 N -0.830 5.830 15 C -0.120 4.120 16 C 0.030 3.970 17 C -0.547 4.547 18 H 0.054 0.946 19 C 0.005 3.995 20 N -0.927 5.927 21 Si 0.959 3.041 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.267 1.267 25 C -0.127 4.127 26 H 0.092 0.908 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.412 0.588 34 H 0.352 0.648 35 H 0.343 0.657 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.264 0.736 41 H 0.110 0.890 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.271 6.205 -13.784 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C 0.003 3.997 4 H 0.111 0.889 5 C -0.189 4.189 6 C -0.132 4.132 7 H 0.111 0.889 8 C 0.009 3.991 9 N -0.370 5.370 10 C 0.312 3.688 11 O -0.453 6.453 12 C -0.035 4.035 13 H 0.127 0.873 14 N -0.361 5.361 15 C -0.160 4.160 16 C -0.007 4.007 17 C -0.585 4.585 18 H 0.073 0.927 19 C -0.193 4.193 20 N -0.567 5.567 21 Si 0.784 3.216 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.192 1.192 25 C -0.165 4.165 26 H 0.111 0.889 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.248 0.752 34 H 0.167 0.833 35 H 0.156 0.844 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.073 0.927 41 H 0.128 0.872 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.389 7.128 -14.072 24.995 hybrid contribution 1.080 -1.778 0.441 2.127 sum -18.308 5.351 -13.631 23.444 Atomic orbital electron populations 1.22973 0.79539 1.03659 1.00892 1.87859 1.21356 1.27511 1.94695 1.23121 0.94748 0.85191 0.96642 0.88945 1.23567 0.95555 1.01819 0.97916 1.22687 0.92221 1.00026 0.98305 0.88863 1.21415 0.94240 0.98362 0.85117 1.45930 1.25098 1.40529 1.25474 1.20707 0.80496 0.80996 0.86633 1.90613 1.62443 1.32147 1.60132 1.21420 0.97153 0.90738 0.94236 0.87321 1.58772 1.24268 1.44779 1.08297 1.22125 0.98967 0.95623 0.99315 1.18962 0.94995 0.94595 0.92123 1.21609 1.34595 1.08981 0.93330 0.92734 1.25873 0.97231 1.01301 0.94908 1.70055 1.46278 1.40974 0.99359 0.85588 0.79041 0.79499 0.77463 1.19625 1.20758 1.19214 1.23214 0.93867 1.03573 0.95880 0.88940 0.93292 0.92768 0.91114 0.88143 0.91495 0.92524 0.75219 0.83287 0.84360 0.91644 0.93783 0.97933 0.97947 0.92697 0.87155 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.85 113.37 1.23 1.51 16 2 O -0.40 -6.90 10.63 -148.98 -1.58 -8.48 16 3 C 0.06 0.84 4.37 31.12 0.14 0.98 16 4 H 0.09 0.93 7.87 -2.39 -0.02 0.91 16 5 C -0.15 -2.21 7.46 31.12 0.23 -1.98 16 6 C -0.11 -1.92 3.69 -10.26 -0.04 -1.95 16 7 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 8 C 0.13 2.84 5.51 86.38 0.48 3.31 16 9 N -0.72 -18.11 5.56 -463.05 -2.57 -20.69 16 10 C 0.53 17.38 7.08 87.66 0.62 18.00 16 11 O -0.57 -22.72 16.25 -3.04 -0.05 -22.77 16 12 C 0.08 2.73 3.21 44.17 0.14 2.87 16 13 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 14 N -0.83 -29.24 8.94 -171.79 -1.54 -30.78 16 15 C -0.12 -4.77 4.78 30.59 0.15 -4.63 16 16 C 0.03 1.51 4.74 29.85 0.14 1.65 16 17 C -0.55 -30.36 9.11 25.60 0.23 -30.13 16 18 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 19 C 0.01 0.30 5.46 84.65 0.46 0.77 16 20 N -0.93 -54.71 13.29 21.45 0.28 -54.42 16 21 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 C -0.13 -1.78 7.47 31.12 0.23 -1.55 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 1.30 7.90 -2.39 -0.02 1.28 16 31 H 0.07 1.46 7.84 -2.38 -0.02 1.44 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.41 8.81 8.47 -92.71 -0.79 8.02 16 34 H 0.35 12.53 7.55 -89.69 -0.68 11.85 16 35 H 0.34 12.36 8.58 -89.69 -0.77 11.59 16 36 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.00 0.12 6.87 -2.38 -0.02 0.11 16 39 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.11 1.21 8.10 -2.39 -0.02 1.19 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -68.02 348.04 -0.63 -68.65 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: -1.21 Total: 33.95 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 4.01 Total: -11.14 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -3.82 Total: -105.88 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -1.63 Total: -31.25 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -68.02 -0.63 -68.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714736923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.085 kcal (2) G-P(sol) polarization free energy of solvation -68.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds