Wall clock time and date at job start Mon Mar 30 2020 01:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46885 * 2 1 4 4 N 1.46903 * 109.47002 * 179.97438 * 3 2 1 5 5 C 1.46904 * 111.00190 * 293.95803 * 4 3 2 6 6 C 1.46897 * 110.99867 * 170.00434 * 4 3 2 7 7 C 1.52999 * 109.47045 * 287.87869 * 6 4 3 8 8 H 1.08995 * 110.63200 * 54.15142 * 7 6 4 9 9 C 1.55140 * 110.85772 * 290.94348 * 7 6 4 10 10 C 1.54900 * 101.65683 * 205.89447 * 9 7 6 11 11 N 1.47845 * 104.79719 * 37.06721 * 10 9 7 12 12 C 1.46896 * 111.00246 * 213.63754 * 11 10 9 13 13 C 1.53003 * 109.47246 * 290.84229 * 12 11 10 14 14 H 1.08992 * 109.46848 * 60.00379 * 13 12 11 15 15 O 1.42894 * 109.47255 * 300.00155 * 13 12 11 16 16 C 1.50705 * 109.46973 * 179.97438 * 13 12 11 17 17 H 1.08004 * 119.99908 * 359.73085 * 16 13 12 18 18 C 1.37874 * 119.99907 * 180.02562 * 16 13 12 19 19 N 1.31513 * 120.00397 * 179.72474 * 18 16 13 20 20 Si 1.86803 * 119.99943 * 359.72573 * 18 16 13 21 21 H 1.48501 * 109.46905 * 89.99820 * 20 18 16 22 22 H 1.48503 * 109.47172 * 210.00201 * 20 18 16 23 23 H 1.48499 * 109.47216 * 330.00102 * 20 18 16 24 24 C 1.47441 * 108.56570 * 335.90826 * 11 10 9 25 25 H 1.09000 * 109.46957 * 299.99682 * 1 2 3 26 26 H 1.09004 * 109.46914 * 59.99807 * 1 2 3 27 27 H 1.09002 * 109.47190 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47342 * 240.00547 * 2 1 3 29 29 H 1.08997 * 109.47470 * 119.99794 * 2 1 3 30 30 H 1.09000 * 109.47063 * 60.00383 * 3 2 1 31 31 H 1.08996 * 109.47414 * 300.00154 * 3 2 1 32 32 H 1.09002 * 109.46996 * 302.03238 * 5 4 3 33 33 H 1.08997 * 109.46963 * 62.03063 * 5 4 3 34 34 H 1.08996 * 109.47042 * 182.03231 * 5 4 3 35 35 H 1.08999 * 109.47099 * 167.88155 * 6 4 3 36 36 H 1.08992 * 109.47409 * 47.88025 * 6 4 3 37 37 H 1.08999 * 110.99348 * 323.98493 * 9 7 6 38 38 H 1.09001 * 110.99309 * 87.76266 * 9 7 6 39 39 H 1.09003 * 110.37475 * 278.24487 * 10 9 7 40 40 H 1.09005 * 110.37949 * 155.89837 * 10 9 7 41 41 H 1.09006 * 109.47057 * 170.84586 * 12 11 10 42 42 H 1.09000 * 109.47227 * 50.84968 * 12 11 10 43 43 H 0.96702 * 114.00250 * 299.99763 * 15 13 12 44 44 H 0.96991 * 120.00613 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.89161 * 120.39316 * 24 11 10 46 46 H 1.09001 * 109.88981 * 241.57610 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0349 0.8859 1.2542 6 6 4.0354 2.7932 -0.2374 7 6 3.8053 3.1798 -1.6997 8 1 2.7540 3.0695 -1.9653 9 6 4.7009 2.3335 -2.6424 10 6 4.8403 3.2714 -3.8672 11 7 4.9263 4.6313 -3.2935 12 6 4.2897 5.6168 -4.1774 13 6 5.1263 5.7778 -5.4483 14 1 5.1942 4.8191 -5.9623 15 8 6.4380 6.2263 -5.1014 16 6 4.4727 6.7884 -6.3553 17 1 3.5504 7.2647 -6.0572 18 6 5.0491 7.1005 -7.5683 19 7 4.4760 7.9784 -8.3622 20 14 6.6441 6.2763 -8.0840 21 1 6.3381 5.0300 -8.8313 22 1 7.4187 7.1976 -8.9539 23 1 7.4435 5.9460 -6.8770 24 6 4.2867 4.6218 -1.9651 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.6559 1.4651 2.0962 33 1 3.7152 -0.1514 1.3535 34 1 5.1239 0.9309 1.2431 35 1 5.1036 2.8101 -0.0209 36 1 3.5219 3.5028 0.4112 37 1 5.6720 2.1385 -2.1874 38 1 4.2069 1.4016 -2.9177 39 1 3.9655 3.1863 -4.5119 40 1 5.7474 3.0364 -4.4240 41 1 4.2218 6.5756 -3.6633 42 1 3.2891 5.2748 -4.4419 43 1 6.4540 7.0759 -4.6398 44 1 4.8816 8.1982 -9.2154 45 1 5.0084 4.9178 -1.2038 46 1 3.4364 5.3038 -1.9581 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809577704.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:16 Heat of formation + Delta-G solvation = -48.644632 kcal Electronic energy + Delta-G solvation = -21521.408087 eV Core-core repulsion = 18445.690723 eV Total energy + Delta-G solvation = -3075.717364 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.30016 -37.72881 -35.78590 -33.63288 -32.17842 -31.81321 -29.31622 -28.31283 -27.22204 -26.07082 -24.24853 -22.64851 -21.42391 -20.98656 -19.91810 -19.82341 -17.25714 -16.21273 -15.75817 -15.69654 -14.92630 -14.69648 -14.59590 -14.30585 -14.21887 -13.78658 -13.32721 -13.27540 -12.95041 -12.75240 -12.48398 -12.37591 -12.06872 -12.00407 -11.87139 -11.53049 -11.34268 -11.13333 -10.98101 -10.86361 -10.78382 -10.69021 -10.59466 -10.31179 -10.26922 -9.80205 -8.96198 -8.57117 -8.52147 -8.16372 -7.69780 -6.08883 -4.19821 3.43526 3.52792 3.65813 3.81823 4.47547 4.59152 4.59542 4.73557 4.74861 4.82773 4.98409 5.10585 5.15179 5.21061 5.26881 5.27429 5.40273 5.41491 5.49465 5.56568 5.62038 5.63982 5.70210 5.76675 5.80022 5.91525 5.94672 5.98107 6.01731 6.02831 6.16692 6.22550 6.34985 6.47390 6.48202 6.67142 6.86059 6.86878 7.32569 7.47345 7.58827 7.77742 8.34082 8.88027 9.18427 9.56821 11.01867 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.033060 B = 0.003478 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.739783 B = 8047.872301 C = 8316.507205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.052 3.948 4 N -0.541 5.541 5 C 0.023 3.977 6 C 0.068 3.932 7 C -0.105 4.105 8 H 0.072 0.928 9 C -0.106 4.106 10 C 0.041 3.959 11 N -0.519 5.519 12 C 0.036 3.964 13 C 0.203 3.797 14 H 0.051 0.949 15 O -0.570 6.570 16 C -0.565 4.565 17 H 0.070 0.930 18 C 0.083 3.917 19 N -0.896 5.896 20 Si 0.871 3.129 21 H -0.288 1.288 22 H -0.297 1.297 23 H -0.214 1.214 24 C 0.047 3.953 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.030 0.970 31 H 0.076 0.924 32 H 0.022 0.978 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.031 0.969 43 H 0.353 0.647 44 H 0.264 0.736 45 H 0.070 0.930 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.764 -14.628 19.187 24.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.076 4.076 4 N -0.264 5.264 5 C -0.125 4.125 6 C -0.060 4.060 7 C -0.125 4.125 8 H 0.090 0.910 9 C -0.145 4.145 10 C -0.087 4.087 11 N -0.243 5.243 12 C -0.092 4.092 13 C 0.145 3.855 14 H 0.069 0.931 15 O -0.375 6.375 16 C -0.603 4.603 17 H 0.088 0.912 18 C -0.121 4.121 19 N -0.533 5.533 20 Si 0.697 3.303 21 H -0.215 1.215 22 H -0.223 1.223 23 H -0.136 1.136 24 C -0.082 4.082 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.041 0.959 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.049 0.951 43 H 0.199 0.801 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.903 -15.241 18.411 24.077 hybrid contribution -0.843 0.606 0.335 1.091 sum -3.746 -14.634 18.746 24.075 Atomic orbital electron populations 1.21746 0.95714 1.01719 1.01828 1.21527 0.95315 0.96446 1.02550 1.22235 0.87314 0.97194 1.00857 1.61953 1.07551 1.22539 1.34395 1.22412 1.00451 0.99954 0.89659 1.22103 1.00113 0.88058 0.95725 1.22393 0.99896 0.95662 0.94511 0.91016 1.22586 0.99438 0.97471 0.94961 1.23074 1.00996 0.88228 0.96375 1.63611 1.53658 1.05208 1.01846 1.23032 0.96185 0.94442 0.95538 1.19665 0.80660 0.95458 0.89712 0.93149 1.86658 1.30726 1.40985 1.79118 1.21545 1.10915 1.25084 1.02770 0.91210 1.24989 0.97556 0.93907 0.95675 1.69959 1.39932 1.32702 1.10697 0.87029 0.84818 0.78765 0.79667 1.21512 1.22338 1.13631 1.22835 0.97278 0.94956 0.93130 0.92981 0.92538 0.92577 0.91103 0.92175 0.95153 0.90551 0.95946 0.91304 0.91433 0.90450 0.94882 0.91112 0.91144 0.93904 0.90442 0.91514 0.95054 0.80115 0.92639 0.91137 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -0.95 5.86 -26.73 -0.16 -1.11 16 3 C 0.05 0.47 4.81 -3.82 -0.02 0.45 16 4 N -0.54 -5.28 4.59 -242.92 -1.12 -6.39 16 5 C 0.02 0.19 9.27 60.07 0.56 0.75 16 6 C 0.07 0.71 4.27 -3.83 -0.02 0.69 16 7 C -0.10 -1.28 2.95 -88.80 -0.26 -1.54 16 8 H 0.07 0.90 6.52 -51.93 -0.34 0.56 16 9 C -0.11 -1.39 6.41 -24.60 -0.16 -1.55 16 10 C 0.04 0.67 5.78 -2.30 -0.01 0.66 16 11 N -0.52 -9.13 5.03 -231.25 -1.16 -10.29 16 12 C 0.04 0.73 4.17 -3.82 -0.02 0.71 16 13 C 0.20 4.86 2.30 -27.88 -0.06 4.79 16 14 H 0.05 1.26 6.93 -51.93 -0.36 0.90 16 15 O -0.57 -13.44 9.99 -35.23 -0.35 -13.79 16 16 C -0.57 -15.95 9.34 -34.44 -0.32 -16.27 16 17 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 18 C 0.08 2.43 5.47 -17.82 -0.10 2.33 16 19 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 20 Si 0.87 22.28 26.99 -169.99 -4.59 17.69 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 23 H -0.21 -5.39 5.30 56.52 0.30 -5.09 16 24 C 0.05 0.67 6.46 -2.84 -0.02 0.65 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.45 6.59 -51.93 -0.34 0.10 16 30 H 0.03 0.27 8.11 -51.93 -0.42 -0.15 16 31 H 0.08 0.75 6.37 -51.93 -0.33 0.42 16 32 H 0.02 0.17 8.12 -51.93 -0.42 -0.25 16 33 H 0.07 0.50 6.57 -51.93 -0.34 0.16 16 34 H 0.07 0.52 7.95 -51.93 -0.41 0.11 16 35 H 0.08 0.80 7.78 -51.93 -0.40 0.40 16 36 H 0.03 0.33 8.05 -51.93 -0.42 -0.08 16 37 H 0.07 0.92 7.99 -51.93 -0.41 0.51 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.04 0.72 7.62 -51.93 -0.40 0.33 16 40 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.07 1.34 8.03 -51.93 -0.42 0.92 16 42 H 0.03 0.64 7.85 -51.93 -0.41 0.24 16 43 H 0.35 7.50 9.04 45.56 0.41 7.91 16 44 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 45 H 0.07 0.96 7.82 -51.93 -0.41 0.55 16 46 H 0.05 0.69 7.55 -51.93 -0.39 0.30 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -31.09 351.12 -9.38 -40.47 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -8.00 Total: 4.12 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -0.22 Total: -10.15 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: -1.51 Total: -43.63 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.35 Total: -13.79 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.59 Total: 17.69 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.09 -9.38 -40.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809577704.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.177 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds