Wall clock time and date at job start Mon Mar 30 2020 00:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.41601 * 113.99670 * 2 1 4 4 C 1.46503 * 119.99710 * 275.12556 * 3 2 1 5 5 C 1.34774 * 120.00299 * 95.13019 * 3 2 1 6 6 O 1.21280 * 119.99828 * 5.14254 * 5 3 2 7 7 C 1.50692 * 120.00172 * 185.13864 * 5 3 2 8 8 C 1.53117 * 109.52718 * 156.28832 * 7 5 3 9 9 C 1.53031 * 109.28412 * 177.62376 * 8 7 5 10 10 N 1.46843 * 109.52464 * 300.81919 * 9 8 7 11 11 C 1.46896 * 111.00362 * 185.83626 * 10 9 8 12 12 C 1.52998 * 109.47359 * 170.00227 * 11 10 9 13 13 C 1.50702 * 109.47083 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00109 * 359.97438 * 13 12 11 15 15 C 1.37886 * 119.99813 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99740 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 119.99809 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47768 * 89.99957 * 17 15 13 19 19 H 1.48510 * 109.46695 * 209.99708 * 17 15 13 20 20 H 1.48505 * 109.47232 * 329.99094 * 17 15 13 21 21 C 1.46855 * 111.19625 * 61.74057 * 10 9 8 22 22 C 1.53038 * 109.52368 * 298.26038 * 21 10 9 23 23 H 1.09002 * 109.46983 * 177.82626 * 1 2 3 24 24 H 1.09000 * 109.47181 * 297.82972 * 1 2 3 25 25 H 1.09006 * 109.47111 * 57.83218 * 1 2 3 26 26 H 1.09000 * 109.47319 * 270.00060 * 4 3 2 27 27 H 1.08996 * 109.47180 * 30.00776 * 4 3 2 28 28 H 1.09002 * 109.47146 * 150.00299 * 4 3 2 29 29 H 1.09007 * 109.52548 * 36.16168 * 7 5 3 30 30 H 1.09007 * 109.50259 * 57.68194 * 8 7 5 31 31 H 1.09000 * 109.49947 * 297.56961 * 8 7 5 32 32 H 1.09000 * 109.46399 * 180.80678 * 9 8 7 33 33 H 1.09001 * 109.45378 * 60.83196 * 9 8 7 34 34 H 1.09001 * 109.47132 * 50.00153 * 11 10 9 35 35 H 1.08996 * 109.47542 * 290.00767 * 11 10 9 36 36 H 1.09007 * 109.47271 * 300.00206 * 12 11 10 37 37 H 1.08993 * 109.47305 * 60.00154 * 12 11 10 38 38 H 0.97006 * 119.99953 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.45960 * 58.27360 * 21 10 9 40 40 H 1.09001 * 109.45967 * 178.23847 * 21 10 9 41 41 H 1.09002 * 109.49999 * 299.23628 * 22 21 10 42 42 H 1.08998 * 109.50018 * 179.11944 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.1992 2.0089 -1.2637 5 6 2.3743 1.8669 1.1625 6 8 2.3005 1.2400 2.1981 7 6 2.8792 3.2866 1.1755 8 6 2.6712 3.8910 2.5669 9 6 3.2392 5.3118 2.5908 10 7 4.6701 5.2738 2.2631 11 6 5.2797 6.6021 2.4114 12 6 6.8012 6.4795 2.3075 13 6 7.4266 7.8421 2.4603 14 1 6.8013 8.7088 2.6156 15 6 8.7970 7.9821 2.4019 16 7 9.3427 9.1713 2.5347 17 14 9.8784 6.4830 2.1326 18 1 10.0864 6.2776 0.6767 19 1 11.1907 6.6939 2.7951 20 1 9.2180 5.2857 2.7121 21 6 4.8916 4.7410 0.9126 22 6 4.3728 3.3032 0.8386 23 1 -0.3633 -1.0269 -0.0390 24 1 -0.3633 0.4798 0.9088 25 1 -0.3634 0.5472 -0.8700 26 1 3.1825 1.7700 -1.6690 27 1 1.4301 1.7065 -1.9743 28 1 2.1297 3.0824 -1.0880 29 1 2.3329 3.8744 0.4377 30 1 3.1856 3.2809 3.3093 31 1 1.6057 3.9212 2.7949 32 1 3.1055 5.7398 3.5843 33 1 2.7149 5.9248 1.8577 34 1 5.0142 7.0171 3.3837 35 1 4.9135 7.2600 1.6234 36 1 7.1675 5.8215 3.0956 37 1 7.0667 6.0645 1.3352 38 1 10.3069 9.2699 2.4933 39 1 4.3595 5.3569 0.1875 40 1 5.9579 4.7545 0.6872 41 1 4.9140 2.6838 1.5538 42 1 4.5231 2.9135 -0.1682 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812870081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:54 Heat of formation + Delta-G solvation = -28.919033 kcal Electronic energy + Delta-G solvation = -21354.062866 eV Core-core repulsion = 18143.367774 eV Total energy + Delta-G solvation = -3210.695093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.44487 -38.46439 -37.20675 -34.67626 -33.66690 -32.39463 -30.82802 -29.74763 -27.69285 -26.73053 -25.42961 -23.32705 -23.07019 -20.82712 -19.90898 -19.38007 -17.84349 -17.32825 -16.89894 -16.34154 -15.56020 -14.90353 -14.87314 -14.49034 -14.35297 -14.23977 -13.81723 -13.54634 -13.52735 -13.08093 -12.97308 -12.69512 -12.54026 -12.39715 -12.00610 -11.51169 -11.42021 -11.09867 -10.96194 -10.83088 -10.72974 -10.52893 -9.92139 -9.88322 -9.82836 -9.61266 -9.24258 -9.19329 -8.52006 -7.85871 -6.03894 -4.02021 1.52721 2.33627 3.32450 3.40828 3.47172 4.06154 4.22156 4.29709 4.47163 4.61388 4.67092 4.75427 4.81402 4.92002 4.95776 5.13701 5.19158 5.25658 5.28155 5.30748 5.45118 5.50832 5.64276 5.68981 5.76439 5.97465 6.06252 6.16819 6.21891 6.31784 6.40120 6.46767 6.76096 6.88508 7.15201 7.30817 7.59646 7.63765 7.85229 7.92503 8.53403 9.00280 9.58749 11.09460 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.035847 B = 0.003637 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.917254 B = 7697.214618 C = 8008.657756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.141 6.141 3 N -0.490 5.490 4 C 0.075 3.925 5 C 0.524 3.476 6 O -0.515 6.515 7 C -0.097 4.097 8 C -0.098 4.098 9 C 0.057 3.943 10 N -0.542 5.542 11 C 0.072 3.928 12 C -0.008 4.008 13 C -0.521 4.521 14 H 0.070 0.930 15 C 0.067 3.933 16 N -0.904 5.904 17 Si 0.879 3.121 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.262 1.262 21 C 0.056 3.944 22 C -0.107 4.107 23 H 0.104 0.896 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.029 0.971 34 H 0.068 0.932 35 H 0.026 0.974 36 H 0.025 0.975 37 H 0.011 0.989 38 H 0.263 0.737 39 H 0.031 0.969 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.293 -14.493 -8.810 24.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.144 6.144 3 N -0.272 5.272 4 C -0.066 4.066 5 C 0.313 3.687 6 O -0.388 6.388 7 C -0.119 4.119 8 C -0.136 4.136 9 C -0.071 4.071 10 N -0.267 5.267 11 C -0.055 4.055 12 C -0.045 4.045 13 C -0.560 4.560 14 H 0.088 0.912 15 C -0.134 4.134 16 N -0.543 5.543 17 Si 0.706 3.294 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.186 1.186 21 C -0.072 4.072 22 C -0.145 4.145 23 H 0.122 0.878 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.029 0.971 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.827 -15.239 -7.895 24.746 hybrid contribution -0.133 -0.137 -0.966 0.985 sum -17.960 -15.376 -8.862 25.249 Atomic orbital electron populations 1.23301 0.82003 1.03680 1.01046 1.90683 1.19777 1.07205 1.96714 1.50070 1.59492 1.10053 1.07554 1.22159 1.02902 0.96681 0.84814 1.21315 0.76822 0.88527 0.82016 1.90715 1.52605 1.63728 1.31754 1.21521 0.98813 0.90420 1.01138 1.21499 1.00824 0.96510 0.94812 1.22049 0.88783 0.95200 1.01089 1.62011 1.12044 1.26907 1.25750 1.22115 0.97218 0.85984 1.00165 1.19584 0.90622 0.97768 0.96575 1.21087 0.92224 0.92912 1.49768 0.91155 1.25001 0.98079 0.95740 0.94571 1.69916 1.11233 1.22405 1.50783 0.86777 0.79895 0.84149 0.78530 1.20390 1.21440 1.18639 1.22090 1.02131 0.93264 0.89747 1.21625 0.92112 0.98745 1.02009 0.87758 0.92994 0.93092 0.91126 0.90527 0.89380 0.88974 0.89560 0.91590 0.90284 0.95318 0.91346 0.95560 0.95636 0.97087 0.92740 0.95040 0.89300 0.90068 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 11.45 101.05 1.16 1.14 16 2 O -0.14 -1.67 11.19 -29.60 -0.33 -2.00 16 3 N -0.49 -5.34 3.36 -67.08 -0.23 -5.56 16 4 C 0.08 0.49 10.01 59.85 0.60 1.09 16 5 C 0.52 6.82 6.95 -10.99 -0.08 6.74 16 6 O -0.52 -8.81 16.45 -12.57 -0.21 -9.01 16 7 C -0.10 -1.08 1.83 -91.65 -0.17 -1.25 16 8 C -0.10 -1.22 4.94 -26.65 -0.13 -1.35 16 9 C 0.06 0.77 5.46 -3.84 -0.02 0.75 16 10 N -0.54 -8.93 4.66 -234.68 -1.09 -10.02 16 11 C 0.07 1.41 4.90 -3.83 -0.02 1.39 16 12 C -0.01 -0.18 3.97 -27.88 -0.11 -0.30 16 13 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 14 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 17 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 21 C 0.06 0.80 5.29 -3.83 -0.02 0.78 16 22 C -0.11 -1.28 5.30 -26.65 -0.14 -1.42 16 23 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.42 7.93 -51.93 -0.41 0.01 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.44 5.84 -51.93 -0.30 0.14 16 29 H 0.09 0.79 6.27 -51.92 -0.33 0.47 16 30 H 0.09 1.26 7.80 -51.92 -0.40 0.85 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.05 8.02 -51.93 -0.42 0.63 16 33 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 1.35 7.99 -51.93 -0.41 0.94 16 35 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 36 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 37 H 0.01 0.25 5.86 -51.93 -0.30 -0.05 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 1.42 6.21 -51.93 -0.32 1.09 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.07 0.67 7.27 -51.93 -0.38 0.29 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -34.39 332.98 -7.14 -41.53 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -7.04 Total: -4.30 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 0.64 Total: -5.65 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: -0.54 Total: -42.68 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -0.54 Total: -11.01 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.39 -7.14 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812870081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.614 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds