Wall clock time and date at job start Mon Mar 30 2020 01:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34629 * 117.00086 * 2 1 4 4 O 1.21510 * 120.00476 * 359.97438 * 3 2 1 5 5 N 1.34782 * 120.00136 * 180.02562 * 3 2 1 6 6 C 1.46498 * 120.00343 * 179.97438 * 5 3 2 7 7 C 1.53111 * 109.52307 * 204.99848 * 6 5 3 8 8 C 1.53040 * 109.27976 * 182.37685 * 7 6 5 9 9 N 1.46844 * 109.52213 * 59.17809 * 8 7 6 10 10 C 1.46901 * 111.00526 * 174.16367 * 9 8 7 11 11 C 1.52992 * 109.47859 * 170.00090 * 10 9 8 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 C 1.46848 * 111.20049 * 298.25822 * 9 8 7 22 22 C 1.53045 * 109.52212 * 61.74502 * 21 9 8 23 23 H 1.09005 * 109.46764 * 59.99869 * 1 2 3 24 24 H 1.08994 * 109.47516 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46889 * 300.00268 * 1 2 3 26 26 H 0.97003 * 119.99614 * 359.97438 * 5 3 2 27 27 H 1.09003 * 109.51897 * 325.12645 * 6 5 3 28 28 H 1.08993 * 109.50713 * 62.43648 * 7 6 5 29 29 H 1.09003 * 109.53982 * 302.33410 * 7 6 5 30 30 H 1.09001 * 109.46414 * 299.16653 * 8 7 6 31 31 H 1.08996 * 109.45780 * 179.18574 * 8 7 6 32 32 H 1.09002 * 109.46980 * 49.99749 * 10 9 8 33 33 H 1.09001 * 109.46628 * 290.00171 * 10 9 8 34 34 H 1.09002 * 109.47103 * 59.99734 * 11 10 9 35 35 H 1.08998 * 109.46862 * 300.00546 * 11 10 9 36 36 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 37 37 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 38 38 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 39 39 H 1.09000 * 109.46861 * 181.75554 * 21 9 8 40 40 H 1.08996 * 109.46450 * 301.72736 * 21 9 8 41 41 H 1.08996 * 109.50378 * 180.88718 * 22 21 9 42 42 H 1.08993 * 109.50521 * 60.75626 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1995 0.0000 4 8 1.4016 2.2187 -0.0005 5 7 3.4093 1.2701 -0.0005 6 6 4.0744 2.5754 -0.0011 7 6 5.4718 2.4373 -0.6114 8 6 6.1838 3.7908 -0.5551 9 7 6.2816 4.2362 0.8407 10 6 7.0806 5.4643 0.9468 11 6 6.9554 6.0337 2.3613 12 6 7.7881 7.3125 2.4719 13 6 7.6643 7.8737 3.8651 14 1 7.0531 7.3685 4.5984 15 6 8.3321 9.0314 4.2038 16 7 9.0766 9.6462 3.3110 17 14 8.1791 9.7266 5.9308 18 1 7.2899 8.8539 6.7388 19 1 9.5221 9.7841 6.5620 20 1 7.6042 11.0942 5.8648 21 6 4.9509 4.4214 1.4335 22 6 4.2021 3.0866 1.4366 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 3.9375 0.4565 -0.0005 27 1 3.4886 3.2824 -0.5885 28 1 5.3856 2.1144 -1.6488 29 1 6.0448 1.7011 -0.0476 30 1 5.6180 4.5231 -1.1311 31 1 7.1845 3.6924 -0.9758 32 1 6.7174 6.1974 0.2266 33 1 8.1259 5.2368 0.7380 34 1 7.3186 5.3006 3.0816 35 1 5.9101 6.2611 2.5702 36 1 7.4253 8.0458 1.7516 37 1 8.8334 7.0845 2.2632 38 1 9.5462 10.4609 3.5492 39 1 5.0560 4.7811 2.4570 40 1 4.3908 5.1506 0.8482 41 1 3.2086 3.2277 1.8622 42 1 4.7546 2.3608 2.0332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852769199.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:57 Heat of formation + Delta-G solvation = -117.112624 kcal Electronic energy + Delta-G solvation = -20728.018387 eV Core-core repulsion = 17513.498934 eV Total energy + Delta-G solvation = -3214.519454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.63229 -40.17664 -37.86668 -36.69283 -35.54587 -33.86030 -32.03070 -31.69692 -28.72720 -27.91405 -25.56793 -24.41193 -23.68039 -22.21544 -21.59908 -20.96242 -19.59504 -18.52106 -18.09287 -17.51873 -17.06049 -16.47576 -16.24534 -15.91135 -15.76626 -15.10102 -15.01266 -14.80001 -14.51593 -14.19756 -14.08492 -13.64049 -13.28805 -13.09628 -12.97258 -12.74968 -12.50619 -12.40138 -12.27909 -12.19752 -11.92520 -11.80458 -11.71947 -11.53058 -11.44032 -11.29264 -11.04299 -10.55559 -10.22691 -9.26053 -8.20342 -6.30971 1.17102 1.39786 1.39833 1.53450 1.69408 2.40728 2.94489 3.12887 3.25495 3.68087 3.79933 4.06063 4.12103 4.26113 4.32337 4.35133 4.36365 4.41215 4.48576 4.56262 4.67709 4.70482 4.71669 4.89061 4.92347 4.95574 5.03077 5.11404 5.12641 5.17547 5.27741 5.35758 5.40638 5.52119 5.74859 5.85898 6.07532 6.19858 6.28366 6.37188 6.86130 7.27193 7.38178 8.91770 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033538 B = 0.002952 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.678689 B = 9482.577550 C =10100.628202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.374 6.374 3 C 0.641 3.359 4 O -0.610 6.610 5 N -0.688 5.688 6 C 0.165 3.835 7 C -0.108 4.108 8 C 0.053 3.947 9 N -0.539 5.539 10 C 0.067 3.933 11 C -0.097 4.097 12 C 0.025 3.975 13 C -0.541 4.541 14 H 0.058 0.942 15 C -0.002 4.002 16 N -0.933 5.933 17 Si 0.964 3.036 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.278 1.278 21 C 0.052 3.948 22 C -0.118 4.118 23 H 0.060 0.940 24 H 0.137 0.863 25 H 0.057 0.943 26 H 0.421 0.579 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.031 0.969 31 H 0.093 0.907 32 H 0.024 0.976 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.051 0.949 36 H -0.011 1.011 37 H -0.006 1.006 38 H 0.263 0.737 39 H 0.077 0.923 40 H 0.024 0.976 41 H 0.058 0.942 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.560 -21.972 -9.357 26.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.287 6.287 3 C 0.394 3.606 4 O -0.501 6.501 5 N -0.347 5.347 6 C 0.061 3.939 7 C -0.146 4.146 8 C -0.075 4.075 9 N -0.264 5.264 10 C -0.061 4.061 11 C -0.135 4.135 12 C -0.012 4.012 13 C -0.579 4.579 14 H 0.076 0.924 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.789 3.211 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.204 1.204 21 C -0.076 4.076 22 C -0.157 4.157 23 H 0.079 0.921 24 H 0.155 0.845 25 H 0.076 0.924 26 H 0.259 0.741 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.049 0.951 31 H 0.112 0.888 32 H 0.042 0.958 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.007 0.993 37 H 0.013 0.987 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.042 0.958 41 H 0.077 0.923 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.620 -21.766 -9.135 26.767 hybrid contribution -0.271 1.359 0.371 1.435 sum -12.891 -20.407 -8.764 25.679 Atomic orbital electron populations 1.23489 0.72908 1.05629 1.02445 1.86250 1.25705 1.29998 1.86768 1.18430 0.84094 0.82168 0.75884 1.90995 1.65579 1.36256 1.57303 1.44677 1.02230 1.10943 1.76882 1.21005 0.93691 0.82643 0.96533 1.21800 0.92472 0.97814 1.02563 1.22149 1.01518 0.95877 0.87961 1.62079 1.14320 1.31612 1.18345 1.22030 0.98084 0.89406 0.96550 1.21550 0.99426 0.96791 0.95716 1.18978 0.94322 0.92644 0.95298 1.21718 1.28770 1.09062 0.98361 0.92368 1.25983 0.94836 0.97370 1.01751 1.70100 1.31918 1.19194 1.36155 0.85407 0.78177 0.78195 0.79321 1.18670 1.20226 1.20402 1.22122 0.88651 0.96354 1.00523 1.21916 0.99630 0.97011 0.97105 0.92124 0.84464 0.92369 0.74110 0.91138 0.88468 0.88869 0.95088 0.88826 0.95792 0.90682 0.92657 0.93035 0.99275 0.98722 0.92773 0.90452 0.95758 0.92347 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.62 10.56 113.37 1.20 1.82 16 2 O -0.37 -6.80 10.62 -55.38 -0.59 -7.39 16 3 C 0.64 14.53 8.72 129.79 1.13 15.66 16 4 O -0.61 -18.49 15.79 19.81 0.31 -18.18 16 5 N -0.69 -11.93 5.09 -569.75 -2.90 -14.83 16 6 C 0.16 3.27 2.52 45.07 0.11 3.38 16 7 C -0.11 -1.68 5.57 30.64 0.17 -1.51 16 8 C 0.05 1.12 5.42 86.33 0.47 1.59 16 9 N -0.54 -14.96 4.81 -896.36 -4.31 -19.27 16 10 C 0.07 2.28 5.27 86.30 0.46 2.74 16 11 C -0.10 -4.05 4.40 30.59 0.13 -3.92 16 12 C 0.03 1.35 4.97 29.85 0.15 1.50 16 13 C -0.54 -31.38 9.11 25.60 0.23 -31.15 16 14 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 15 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 16 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 17 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 18 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 C 0.05 1.46 4.85 86.33 0.42 1.88 16 22 C -0.12 -2.75 5.68 30.65 0.17 -2.57 16 23 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.42 4.76 8.72 -92.71 -0.81 3.96 16 27 H 0.07 1.71 7.58 -2.39 -0.02 1.69 16 28 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 1.78 8.12 -2.39 -0.02 1.76 16 32 H 0.02 0.84 8.08 -2.39 -0.02 0.82 16 33 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.05 2.12 6.21 -2.39 -0.01 2.11 16 36 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 37 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.08 2.41 5.81 -2.39 -0.01 2.39 16 40 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -71.53 339.38 0.12 -71.41 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.18 Total: 8.70 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 5.11 Total: -10.22 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -6.92 Total: -91.28 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.27 Total: -25.57 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -71.53 0.12 -71.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852769199.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.703 kcal (2) G-P(sol) polarization free energy of solvation -71.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds