Wall clock time and date at job start Mon Mar 30 2020 01:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47136 * 2 1 4 4 C 1.53004 * 109.46869 * 119.99800 * 2 1 3 5 5 H 1.09002 * 109.46868 * 300.00227 * 4 2 1 6 6 O 1.42893 * 109.47232 * 60.00000 * 4 2 1 7 7 C 1.53003 * 109.46726 * 180.02562 * 4 2 1 8 8 C 1.53009 * 109.46674 * 175.00088 * 7 4 2 9 9 N 1.46900 * 109.46949 * 180.02562 * 8 7 4 10 10 C 1.46958 * 110.99586 * 293.79815 * 9 8 7 11 11 C 1.53051 * 109.36297 * 176.81590 * 10 9 8 12 12 N 1.46952 * 109.36725 * 58.39768 * 11 10 9 13 13 C 1.46897 * 111.00132 * 176.81226 * 12 11 10 14 14 C 1.50703 * 109.47043 * 58.99039 * 13 12 11 15 15 H 1.07999 * 120.00312 * 4.99282 * 14 13 12 16 16 C 1.37876 * 119.99909 * 184.98816 * 14 13 12 17 17 N 1.31520 * 119.99736 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00257 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47260 * 90.00068 * 18 16 14 20 20 H 1.48500 * 109.47387 * 210.00101 * 18 16 14 21 21 H 1.48503 * 109.46906 * 329.99941 * 18 16 14 22 22 C 1.46960 * 110.87904 * 300.68224 * 12 11 10 23 23 C 1.46952 * 111.00075 * 169.99817 * 9 8 7 24 24 H 1.08989 * 109.47722 * 300.00177 * 1 2 3 25 25 H 1.09000 * 109.47022 * 60.00707 * 1 2 3 26 26 H 1.09004 * 109.46748 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47561 * 239.99603 * 2 1 3 28 28 H 1.08998 * 109.47844 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47096 * 299.99587 * 3 2 1 30 30 H 1.09002 * 109.47219 * 59.99394 * 3 2 1 31 31 H 0.96707 * 114.00221 * 60.00454 * 6 4 2 32 32 H 1.08994 * 109.47439 * 55.00080 * 7 4 2 33 33 H 1.08996 * 109.47063 * 294.99040 * 7 4 2 34 34 H 1.08994 * 109.47194 * 59.99842 * 8 7 4 35 35 H 1.09004 * 109.46665 * 299.99505 * 8 7 4 36 36 H 1.08999 * 109.48870 * 296.77789 * 10 9 8 37 37 H 1.08997 * 109.49499 * 56.84404 * 10 9 8 38 38 H 1.09004 * 109.48475 * 298.42666 * 11 10 9 39 39 H 1.09002 * 109.48861 * 178.37196 * 11 10 9 40 40 H 1.08997 * 109.47269 * 178.99257 * 13 12 11 41 41 H 1.09001 * 109.47139 * 298.99248 * 13 12 11 42 42 H 0.96999 * 119.99469 * 180.02562 * 17 16 14 43 43 H 1.09000 * 109.48363 * 299.34769 * 22 12 11 44 44 H 1.09000 * 109.48544 * 179.29305 * 22 12 11 45 45 H 1.08996 * 109.48690 * 303.15455 * 23 9 8 46 46 H 1.08999 * 109.48582 * 63.21891 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6765 -0.2073 2.1393 6 8 1.5636 -2.0684 1.2494 7 6 3.5700 -0.7207 1.2496 8 6 4.0799 -1.3303 2.5571 9 7 5.5489 -1.3292 2.5577 10 6 6.0765 -2.2323 1.5254 11 6 7.6043 -2.1426 1.5054 12 7 8.1306 -2.4976 2.8307 13 6 9.5996 -2.4966 2.8313 14 6 10.1012 -1.1305 2.4399 15 1 9.4023 -0.3205 2.2920 16 6 11.4524 -0.9145 2.2708 17 7 11.8901 0.2779 1.9298 18 14 12.6613 -2.3155 2.5261 19 1 12.8676 -3.0316 1.2416 20 1 13.9578 -1.7700 3.0024 21 1 12.1197 -3.2586 3.5372 22 6 7.6029 -1.5945 3.8630 23 6 6.0752 -1.6842 3.8830 24 1 -0.3634 0.5138 0.8898 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.8490 -2.5866 0.4844 32 1 3.9330 0.3032 1.1602 33 1 3.9337 -1.3100 0.4079 34 1 3.7169 -2.3541 2.6464 35 1 3.7161 -0.7410 3.3988 36 1 5.7753 -3.2557 1.7490 37 1 5.6824 -1.9415 0.5516 38 1 7.9055 -1.1254 1.2549 39 1 7.9994 -2.8331 0.7602 40 1 9.9627 -2.7451 3.8285 41 1 9.9637 -3.2356 2.1175 42 1 12.8407 0.4296 1.8104 43 1 7.9043 -0.5712 3.6393 44 1 7.9972 -1.8854 4.8366 45 1 5.6801 -0.9938 4.6280 46 1 5.7740 -2.7014 4.1333 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878312326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:58 Heat of formation + Delta-G solvation = -57.294543 kcal Electronic energy + Delta-G solvation = -21648.993643 eV Core-core repulsion = 18572.901191 eV Total energy + Delta-G solvation = -3076.092452 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.21521 -38.27914 -35.34039 -34.38326 -32.48091 -31.16043 -30.28518 -28.20485 -27.20274 -25.68282 -23.92932 -23.05123 -21.57492 -20.85659 -20.64723 -19.03408 -16.80252 -16.72004 -16.03057 -15.68111 -14.97840 -14.73516 -14.22798 -14.22231 -14.14215 -14.03463 -13.75718 -13.18950 -12.80527 -12.54407 -12.44699 -12.28500 -12.13702 -11.93524 -11.83314 -11.57001 -11.20330 -11.13050 -10.99400 -10.84892 -10.62623 -10.57661 -10.45896 -10.21512 -10.06102 -9.96111 -9.75199 -9.45469 -8.58193 -8.01027 -7.17745 -6.09054 -4.08667 3.27943 3.35731 3.39868 4.00310 4.26220 4.40539 4.49892 4.65371 4.86934 4.93993 5.00848 5.17354 5.22017 5.24484 5.40235 5.43731 5.49585 5.51247 5.60221 5.63974 5.66475 5.75098 5.84853 5.88178 5.91067 5.96575 6.00644 6.04071 6.10969 6.17710 6.24477 6.32624 6.57940 6.79985 6.88947 6.94238 7.07317 7.37656 7.40990 7.46999 7.57916 8.07613 8.11832 8.46732 8.95023 9.53849 11.03891 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.033522 B = 0.003498 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.070017 B = 8003.596218 C = 8375.697231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C -0.151 4.151 4 C 0.111 3.889 5 H 0.096 0.904 6 O -0.562 6.562 7 C -0.151 4.151 8 C 0.061 3.939 9 N -0.538 5.538 10 C 0.059 3.941 11 C 0.063 3.937 12 N -0.538 5.538 13 C 0.155 3.845 14 C -0.550 4.550 15 H 0.077 0.923 16 C 0.071 3.929 17 N -0.899 5.899 18 Si 0.879 3.121 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.265 1.265 22 C 0.062 3.938 23 C 0.061 3.939 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.372 0.628 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.035 0.965 35 H 0.067 0.933 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.027 0.973 41 H 0.024 0.976 42 H 0.263 0.737 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.297 -2.217 -2.567 20.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.208 4.208 4 C 0.052 3.948 5 H 0.114 0.886 6 O -0.367 6.367 7 C -0.188 4.188 8 C -0.067 4.067 9 N -0.263 5.263 10 C -0.069 4.069 11 C -0.066 4.066 12 N -0.262 5.262 13 C 0.028 3.972 14 C -0.588 4.588 15 H 0.095 0.905 16 C -0.131 4.131 17 N -0.537 5.537 18 Si 0.706 3.294 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.067 4.067 23 C -0.067 4.067 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.219 0.781 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.045 0.955 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -20.397 -1.927 -2.029 20.588 hybrid contribution 1.157 -0.659 -0.493 1.420 sum -19.240 -2.586 -2.522 19.576 Atomic orbital electron populations 1.21758 0.94736 1.02106 1.01407 1.21802 0.96605 0.97353 0.98801 1.21885 1.01815 0.95220 1.01897 1.22002 0.92538 0.82478 0.97799 0.88577 1.86568 1.76996 1.23575 1.49524 1.22391 0.94940 1.03150 0.98358 1.21979 0.87854 0.99394 0.97508 1.62137 1.06363 1.52280 1.05488 1.22240 0.96267 0.93707 0.94696 1.21952 0.91534 1.01111 0.92020 1.62610 1.10038 1.49544 1.03965 1.20147 0.83593 0.96634 0.96845 1.21713 0.93366 0.96165 1.47588 0.90512 1.24978 0.98414 0.95447 0.94257 1.69937 1.14681 1.21544 1.47581 0.86799 0.80678 0.82844 0.79074 1.20233 1.21344 1.18923 1.21957 0.91732 0.97188 0.95805 1.22179 0.96219 0.98468 0.89840 0.92801 0.92999 0.92170 0.91090 0.91685 0.92625 0.92510 0.78120 0.89731 0.91573 0.94635 0.91410 0.95027 0.91239 0.92628 0.91540 0.95542 0.95744 0.92727 0.92890 0.91462 0.91279 0.94917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.05 37.16 0.34 -0.74 16 2 C -0.13 -1.00 2.69 -90.62 -0.24 -1.25 16 3 C -0.15 -1.20 8.85 37.15 0.33 -0.87 16 4 C 0.11 1.01 2.55 -26.73 -0.07 0.94 16 5 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 6 O -0.56 -5.42 12.20 -35.23 -0.43 -5.85 16 7 C -0.15 -1.58 4.61 -26.72 -0.12 -1.70 16 8 C 0.06 0.77 4.85 -3.82 -0.02 0.75 16 9 N -0.54 -8.43 4.71 -234.47 -1.10 -9.53 16 10 C 0.06 0.94 5.41 -3.77 -0.02 0.92 16 11 C 0.06 1.24 5.24 -3.77 -0.02 1.22 16 12 N -0.54 -11.46 4.92 -235.91 -1.16 -12.62 16 13 C 0.15 3.76 4.21 -4.98 -0.02 3.74 16 14 C -0.55 -15.39 8.21 -34.44 -0.28 -15.67 16 15 H 0.08 2.36 6.07 -52.49 -0.32 2.04 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 17 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 18 Si 0.88 21.51 27.37 -169.99 -4.65 16.86 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.26 -6.25 6.69 56.52 0.38 -5.87 16 22 C 0.06 1.22 5.32 -3.77 -0.02 1.20 16 23 C 0.06 0.99 5.61 -3.77 -0.02 0.97 16 24 H 0.05 0.41 8.14 -51.94 -0.42 -0.01 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.47 7.68 -51.93 -0.40 0.07 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.56 6.32 -51.93 -0.33 0.23 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.37 2.53 9.05 45.56 0.41 2.94 16 32 H 0.08 0.95 6.17 -51.93 -0.32 0.63 16 33 H 0.07 0.69 6.49 -51.93 -0.34 0.35 16 34 H 0.04 0.47 7.80 -51.93 -0.41 0.06 16 35 H 0.07 0.83 8.03 -51.93 -0.42 0.41 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.99 6.34 -51.93 -0.33 0.66 16 38 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.03 0.65 7.52 -51.93 -0.39 0.26 16 41 H 0.02 0.60 7.29 -51.93 -0.38 0.22 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.05 1.20 6.78 -51.93 -0.35 0.84 16 44 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 45 H 0.07 1.01 8.07 -51.93 -0.42 0.59 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 346.06 15.07 5.22 5.22 Total: -1.00 -30.70 346.06 -9.34 -40.04 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.71 Total: 1.15 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -0.27 Total: -8.53 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -1.49 Total: -48.88 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.43 Total: -5.85 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.65 Total: 16.86 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.70 -9.34 -40.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878312326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.256 kcal (2) G-P(sol) polarization free energy of solvation -30.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds